Propagation of CcmR regulog to Cyanothece sp. CCY 0110
| Source regulog: | CcmR - Cyanobacteria |
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor |
| Biological process: | Carbon dioxide fixation |
| Effector: | |
| Phylum: | Cyanobacteria |
| Propagated regulon: | |
| Target genome | Cyanothece sp. CCY 0110 |
| Orthologous TF(s) | CY0110_12167 |
| Regulated genes | 10 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -46
Score: 3.8 Sequence: GTAGTTTATAATCAAT
Locus tag: CY0110_23911
|
||||
| CY0110_23911 | -46 | 3.8 | GTAGTTTATAATCAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cupS | ||||
| Ortholog function: CO2 uptake transporter, small subunit | ||||
| Gloeobacter violaceus PCC 7421 | glr1006 | -139 | 5 | ATCTACTTTTATCTAT |
| Nostoc sp. PCC 7120 | alr1320 | 34 | 4.4 | ATAGTTTTAAAACTCT |
| Synechococcus sp. JA-3-3Ab | CYA_0636 | -107 | 5 | CTTGATTTTTGTCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0175 | -63 | 5 | ATTGACTCTAGTCTAT |
| Synechocystis sp. PCC 6803 | sll1735 | -204 | 3.9 | ATTGTCGCTTGACTAT |
|
Position: -319
Score: 4.2 Sequence: ATAAACTTGAGTATAT
Position: -84
Score: 4.2 Sequence: ATATACTTAAAGGTAT
Position: -52
Score: 4.5 Sequence: ATAGATTTTTGTCTTA
Locus tag: CY0110_13741
|
||||
| CY0110_13741 | -319 | 4.2 | ATAAACTTGAGTATAT | |
| -84 | 4.2 | ATATACTTAAAGGTAT | ||
| -52 | 4.5 | ATAGATTTTTGTCTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sbtB | ||||
| Ortholog function: Predicted membrane protein | ||||
| Cyanothece sp. ATCC 51142 | cce_2937 | -52 | 4.5 | ATAGATTTTTGTCTTA |
| Cyanothece sp. PCC 7425 | Cyan7425_5062 | -94 | 4.2 | TTTTACCTATGTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_1248 | -174 | 5.4 | ATAGATAAATGTCTAT |
| Microcystis aeruginosa NIES-843 | MAE_62100 | -196 | 4.7 | ATAGGTTTAAATCAAT |
| -111 | 4.9 | ATAGATTTATAACAAT | ||
| -80 | 5 | ATAAAGTTTTGTCTAT | ||
| Nostoc sp. PCC 7120 | all2133 | -191 | 4.6 | ATAGAATTTTGGCTCT |
| -173 | 4.8 | ATAAATATTGATCTAT | ||
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0472 | -131 | 4.6 | ATAGACTTAAAGATAT |
| -99 | 4.2 | ATAGAGTCTTGTCTTT | ||
| Synechocystis sp. PCC 6803 | slr1513 | -182 | 4.7 | ATAGACTTTAGCTTAT |
| -136 | 5 | ATAGACAAGAGTCTAT | ||
|
Position: -187
Score: 3.9 Sequence: ATAGATCAGAATATAT
Locus tag: CY0110_13751
|
||||
| CY0110_13751 | -187 | 3.9 | ATAGATCAGAATATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sbtA | ||||
| Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter | ||||
| Cyanothece sp. ATCC 51142 | cce_2939 | -181 | 4 | ATAGATCGATATATAT |
| Cyanothece sp. PCC 7425 | Cyan7425_5063 | -94 | 4.2 | TTTTACCTATGTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_1249 | -174 | 5.4 | ATAGATAAATGTCTAT |
| Microcystis aeruginosa NIES-843 | MAE_62090 | -196 | 4.7 | ATAGGTTTAAATCAAT |
| -111 | 4.9 | ATAGATTTATAACAAT | ||
| -80 | 5 | ATAAAGTTTTGTCTAT | ||
| Nostoc sp. PCC 7120 | all2134 | -191 | 4.6 | ATAGAATTTTGGCTCT |
| -173 | 4.8 | ATAAATATTGATCTAT | ||
| Synechococcus elongatus PCC 7942 | Synpcc7942_1475 | -207 | 4.6 | ATAGACAGGAATCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0470 | -134 | 4.9 | ATAGAGCTAAATCTAT |
| Synechocystis sp. PCC 6803 | slr1512 | -182 | 4.7 | ATAGACTTTAGCTTAT |
| -136 | 5 | ATAGACAAGAGTCTAT | ||
|
Position: -206
Score: 5 Sequence: ATAGAATCTAGTCTAT
Locus tag: CY0110_20755
|
||||
| CY0110_20755 | -206 | 5 | ATAGAATCTAGTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bicA | ||||
| Ortholog function: Bicarbonate transporter | ||||
| Cyanothece sp. ATCC 51142 | cce_1689 | -232 | 4.5 | ATAGTAATTAGCCTAT |
| -200 | 5 | ATAGAATCTAGTCTAT | ||
|
Position: -74
Score: 5.3 Sequence: ATAGACTTAGTTCTAT
Locus tag: CY0110_29069
|
||||
| CY0110_29069 | -74 | 5.3 | ATAGACTTAGTTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndhF3 | ||||
| Ortholog function: NADH dehydrogenase subunit F | ||||
| Cyanothece sp. ATCC 51142 | cce_0603 | -74 | 5.5 | ATAGACTTAATTCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_4247 | -71 | 5.6 | ATAGACTAAAGTCTAT |
| -8 | 5 | ATTGTTATATGTCTAT | ||
| Gloeobacter violaceus PCC 7421 | gvip132 | -139 | 5 | ATCTACTTTTATCTAT |
| Microcystis aeruginosa NIES-843 | MAE_15120 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Nostoc sp. PCC 7120 | alr4156 | -245 | 5.9 | ATAGATTTTTGTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0640 | -107 | 5 | CTTGATTTTTGTCTAT |
| Synechococcus sp. PCC 7002 | SYNPCC7002_A0172 | -63 | 5 | ATTGACTCTAGTCTAT |
| Synechocystis sp. PCC 6803 | sll1732 | -204 | 3.9 | ATTGTCGCTTGACTAT |
|
Position: -100
Score: 4.8 Sequence: ATGGAAATAAGTCTAT
Locus tag: CY0110_12167
|
||||
| CY0110_12167 | -100 | 4.8 | ATGGAAATAAGTCTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmR | ||||
| Ortholog function: Carbon assimilation transcriptional regulator, LysR family | ||||
| Cyanothece sp. ATCC 51142 | cce_3731 | -133 | 4.3 | ATAGATTTATTTCAAC |
| -101 | 4.8 | ATGGAAATAAGTCTAT | ||
| Cyanothece sp. PCC 8801 | PCC8801_3406 | -144 | 4.4 | ATAGAATTTAATCAAA |
| -112 | 4.8 | ATTGTATTTAATCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_62070 | -238 | 4.3 | ATAGACAAAACTTTAT |
| -207 | 4.9 | ATTGTTATAAATCTAT | ||
| -122 | 4.9 | ATTGATTTAAACCTAT | ||
| Microcystis aeruginosa NIES-843 | MAE_15110 | -71 | 4.9 | ATTGACTAGAATCTAT |
| Synechocystis sp. PCC 6803 | sll1594 | -240 | 4.7 | ATTGGCTTTATTCTAT |
| -179 | 4.8 | ATAGCCATAGGTCTAT | ||
|
Position: -302
Score: 5.1 Sequence: ATAGAAAAATATCTAT
Position: -270
Score: 4.2 Sequence: ATAATAAATAATCTAT
Locus tag: CY0110_12362
|
||||
| CY0110_12362 | -302 | 5.1 | ATAGAAAAATATCTAT | |
| -270 | 4.2 | ATAATAAATAATCTAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cmpA | ||||
| Ortholog function: Bicarbontate ABC transporter, substrate-binding protein | ||||
| Cyanothece sp. ATCC 51142 | cce_0305 | -299 | 4.9 | ATAGATAAATACCTAT |
| Cyanothece sp. PCC 7425 | Cyan7425_4925 | -286 | 5.2 | ATAGACTTAGGGCTAT |
| Cyanothece sp. PCC 8801 | PCC8801_3521 | -268 | 4.5 | ATACATATTAAGCTAT |
| Microcystis aeruginosa NIES-843 | MAE_19990 | -104 | 4.6 | ATAGCTAAATTTCTAT |
| Synechococcus elongatus PCC 7942 | Synpcc7942_1488 | -186 | 4.9 | ATTGACTTAGCTCTAT |
| Synechococcus sp. JA-3-3Ab | CYA_0894 | -185 | 4.2 | ATAAACGGAAGTCTAT |
| -153 | 4.4 | ATTGTATTGTTTCTAT | ||
| Synechocystis sp. PCC 6803 | slr0040 | -208 | 4.5 | TTGGATATTTATCTAT |
| Thermosynechococcus elongatus BP-1 | null | -124 | 4.1 | ATAGATTGTTTGCAAT |