Propagation of CcmR regulog to Cyanothece sp. CCY 0110

Reference regulog properties
Source regulog:	CcmR - Cyanobacteria
Regulator type:	Transcription factor
Regulator family:	LysR
Regulation mode:	repressor
Biological process:	Carbon dioxide fixation
Effector:
Phylum:	Cyanobacteria
Propagated regulon:
Target genome	Cyanothece sp. CCY 0110
Orthologous TF(s)	CY0110_12167
Regulated genes	10

Built upon 72 sites [see more]

Predicted regulatory interactions in *Cyanothece sp. CCY 0110*
	Locus tag	Position	Score	Sequence
Position: -46 Score: 3.8 Sequence: GTAGTTTATAATCAAT Locus tag: CY0110_23911
	CY0110_23911	-46	3.8	GTAGTTTATAATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cupS
Ortholog function: CO2 uptake transporter, small subunit
Gloeobacter violaceus PCC 7421	glr1006	-139	5	ATCTACTTTTATCTAT
Nostoc sp. PCC 7120	alr1320	34	4.4	ATAGTTTTAAAACTCT
Synechococcus sp. JA-3-3Ab	CYA_0636	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0175	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1735	-204	3.9	ATTGTCGCTTGACTAT

Position: -319 Score: 4.2 Sequence: ATAAACTTGAGTATAT Position: -84 Score: 4.2 Sequence: ATATACTTAAAGGTAT Position: -52 Score: 4.5 Sequence: ATAGATTTTTGTCTTA Locus tag: CY0110_13741
	CY0110_13741	-319	4.2	ATAAACTTGAGTATAT
		-84	4.2	ATATACTTAAAGGTAT
		-52	4.5	ATAGATTTTTGTCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtB
Ortholog function: Predicted membrane protein
Cyanothece sp. ATCC 51142	cce_2937	-52	4.5	ATAGATTTTTGTCTTA
Cyanothece sp. PCC 7425	Cyan7425_5062	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1248	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62100	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2133	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0472	-131	4.6	ATAGACTTAAAGATAT
		-99	4.2	ATAGAGTCTTGTCTTT
Synechocystis sp. PCC 6803	slr1513	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -187 Score: 3.9 Sequence: ATAGATCAGAATATAT Locus tag: CY0110_13751
	CY0110_13751	-187	3.9	ATAGATCAGAATATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_2939	-181	4	ATAGATCGATATATAT
Cyanothece sp. PCC 7425	Cyan7425_5063	-94	4.2	TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801	PCC8801_1249	-174	5.4	ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843	MAE_62090	-196	4.7	ATAGGTTTAAATCAAT
		-111	4.9	ATAGATTTATAACAAT
		-80	5	ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120	all2134	-191	4.6	ATAGAATTTTGGCTCT
		-173	4.8	ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1475	-207	4.6	ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0470	-134	4.9	ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803	slr1512	-182	4.7	ATAGACTTTAGCTTAT
		-136	5	ATAGACAAGAGTCTAT

Position: -206 Score: 5 Sequence: ATAGAATCTAGTCTAT Locus tag: CY0110_20755
	CY0110_20755	-206	5	ATAGAATCTAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bicA
Ortholog function: Bicarbonate transporter
Cyanothece sp. ATCC 51142	cce_1689	-232	4.5	ATAGTAATTAGCCTAT
		-200	5	ATAGAATCTAGTCTAT

Position: -74 Score: 5.3 Sequence: ATAGACTTAGTTCTAT Locus tag: CY0110_29069
	CY0110_29069	-74	5.3	ATAGACTTAGTTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142	cce_0603	-74	5.5	ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801	PCC8801_4247	-71	5.6	ATAGACTAAAGTCTAT
		-8	5	ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421	gvip132	-139	5	ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843	MAE_15120	-71	4.9	ATTGACTAGAATCTAT
Nostoc sp. PCC 7120	alr4156	-245	5.9	ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0640	-107	5	CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002	SYNPCC7002_A0172	-63	5	ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803	sll1732	-204	3.9	ATTGTCGCTTGACTAT

Position: -100 Score: 4.8 Sequence: ATGGAAATAAGTCTAT Locus tag: CY0110_12167
	CY0110_12167	-100	4.8	ATGGAAATAAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142	cce_3731	-133	4.3	ATAGATTTATTTCAAC
		-101	4.8	ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801	PCC8801_3406	-144	4.4	ATAGAATTTAATCAAA
		-112	4.8	ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843	MAE_62070	-238	4.3	ATAGACAAAACTTTAT
		-207	4.9	ATTGTTATAAATCTAT
		-122	4.9	ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843	MAE_15110	-71	4.9	ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803	sll1594	-240	4.7	ATTGGCTTTATTCTAT
		-179	4.8	ATAGCCATAGGTCTAT

Position: -302 Score: 5.1 Sequence: ATAGAAAAATATCTAT Position: -270 Score: 4.2 Sequence: ATAATAAATAATCTAT Locus tag: CY0110_12362
	CY0110_12362	-302	5.1	ATAGAAAAATATCTAT
		-270	4.2	ATAATAAATAATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142	cce_0305	-299	4.9	ATAGATAAATACCTAT
Cyanothece sp. PCC 7425	Cyan7425_4925	-286	5.2	ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801	PCC8801_3521	-268	4.5	ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843	MAE_19990	-104	4.6	ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942	Synpcc7942_1488	-186	4.9	ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab	CYA_0894	-185	4.2	ATAAACGGAAGTCTAT
		-153	4.4	ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803	slr0040	-208	4.5	TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1	null	-124	4.1	ATAGATTGTTTGCAAT

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of CcmR regulog to Cyanothece sp. CCY 0110

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --