Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of CcmR regulog to Synechocystis sp. PCC 6803

Reference regulog properties
Source regulog: CcmR - Cyanobacteria
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Carbon dioxide fixation
Effector:
Phylum: Cyanobacteria
Propagated regulon:
Target genome Synechocystis sp. PCC 6803
Orthologous TF(s) sll1594, sll0030
Regulated genes 10
Built upon 72 sites [see more]
Predicted regulatory interactions in Synechocystis sp. PCC 6803
Locus tag Position Score Sequence
Position: -125
Score: 3.8
Sequence: ATAGAATCTATGCAAT
Locus tag: slr2006
slr2006 -125 3.8 ATAGAATCTATGCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mnhC
Ortholog function: Na/H antiporter, subunit C
Cyanothece sp. ATCC 51142 cce_1686 -232 4.5 ATAGTAATTAGCCTAT
-200 5 ATAGAATCTAGTCTAT
Cyanothece sp. PCC 7425 Cyan7425_3542 -121 4.7 ATTTATAAATATCTAT
Cyanothece sp. PCC 8801 PCC8801_2762 -56 4.8 ATAGGCTTTAAGCTAT
-24 4.7 ATAGTTTTTTGTATAT
Synechococcus sp. PCC 7002 SYNPCC7002_A2373 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 slr2006 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -125 3.8 ATAGAATCTATGCAAT
Synechocystis sp. PCC 6803 slr2008 -107 4.3 ATTGTGATTGGTCTAT
Thermosynechococcus elongatus BP-1 tll1818 -219 5 ATTGATAAAAATCTAT
-193 4.4 ATTGACATTGATCTAA
Position: -14
Score: 3.8
Sequence: ATTCAATTAAATCCAT
Locus tag: sll1735
sll1735 -14 3.8 ATTCAATTAAATCCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cupS
Ortholog function: CO2 uptake transporter, small subunit
Gloeobacter violaceus PCC 7421 glr1006 -139 5 ATCTACTTTTATCTAT
Nostoc sp. PCC 7120 alr1320 34 4.4 ATAGTTTTAAAACTCT
Synechococcus sp. JA-3-3Ab CYA_0636 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0175 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1735 -204 3.9 ATTGTCGCTTGACTAT
Position: -204
Score: 3.9
Sequence: ATTGTCGCTTGACTAT
Locus tag: sll1732
sll1732 -204 3.9 ATTGTCGCTTGACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndhF3
Ortholog function: NADH dehydrogenase subunit F
Cyanothece sp. ATCC 51142 cce_0603 -74 5.5 ATAGACTTAATTCTAT
Cyanothece sp. PCC 8801 PCC8801_4247 -71 5.6 ATAGACTAAAGTCTAT
-8 5 ATTGTTATATGTCTAT
Gloeobacter violaceus PCC 7421 gvip132 -139 5 ATCTACTTTTATCTAT
Microcystis aeruginosa NIES-843 MAE_15120 -71 4.9 ATTGACTAGAATCTAT
Nostoc sp. PCC 7120 alr4156 -245 5.9 ATAGATTTTTGTCTAT
Synechococcus sp. JA-3-3Ab CYA_0640 -107 5 CTTGATTTTTGTCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0172 -63 5 ATTGACTCTAGTCTAT
Synechocystis sp. PCC 6803 sll1732 -204 3.9 ATTGTCGCTTGACTAT
Position: -179
Score: 4.8
Sequence: ATAGCCATAGGTCTAT
Locus tag: sll1594
sll1594 -179 4.8 ATAGCCATAGGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmR
Ortholog function: Carbon assimilation transcriptional regulator, LysR family
Cyanothece sp. ATCC 51142 cce_3731 -133 4.3 ATAGATTTATTTCAAC
-101 4.8 ATGGAAATAAGTCTAT
Cyanothece sp. PCC 8801 PCC8801_3406 -144 4.4 ATAGAATTTAATCAAA
-112 4.8 ATTGTATTTAATCTAT
Microcystis aeruginosa NIES-843 MAE_62070 -238 4.3 ATAGACAAAACTTTAT
-207 4.9 ATTGTTATAAATCTAT
-122 4.9 ATTGATTTAAACCTAT
Microcystis aeruginosa NIES-843 MAE_15110 -71 4.9 ATTGACTAGAATCTAT
Synechocystis sp. PCC 6803 sll1594 -240 4.7 ATTGGCTTTATTCTAT
-179 4.8 ATAGCCATAGGTCTAT
Position: -71
Score: 5.6
Sequence: ATAGACTTTTGACTAT
Locus tag: slr2094
slr2094 -71 5.6 ATAGACTTTTGACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpX
Ortholog function: Fructose-1,6-bisphosphatase II
Cyanothece sp. ATCC 51142 cce_3974 -74 5 ATAGACTTTTGACTAA
Cyanothece sp. PCC 8801 PCC8801_3646 -74 5 ATAGACTTTTGACTAA
Microcystis aeruginosa NIES-843 MAE_30020 -71 4.9 ATAGACTTTTGACTGT
Synechocystis sp. PCC 6803 slr2094 -71 5.6 ATAGACTTTTGACTAT
Position: -182
Score: 4.7
Sequence: ATAGACTTTAGCTTAT
Position: -136
Score: 5
Sequence: ATAGACAAGAGTCTAT
Locus tag: slr1512
slr1512 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtA
Ortholog function: High-affinity, low-flux sodium dependent bicarbonate transporter
Cyanothece sp. ATCC 51142 cce_2939 -181 4 ATAGATCGATATATAT
Cyanothece sp. PCC 7425 Cyan7425_5063 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1249 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62090 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2134 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1475 -207 4.6 ATAGACAGGAATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0470 -134 4.9 ATAGAGCTAAATCTAT
Synechocystis sp. PCC 6803 slr1512 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Position: -79
Score: 4.3
Sequence: ATAGTTTATGGTCTGT
Locus tag: slr1513
slr1513 -79 4.3 ATAGTTTATGGTCTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sbtB
Ortholog function: Predicted membrane protein
Cyanothece sp. ATCC 51142 cce_2937 -52 4.5 ATAGATTTTTGTCTTA
Cyanothece sp. PCC 7425 Cyan7425_5062 -94 4.2 TTTTACCTATGTCTAT
Cyanothece sp. PCC 8801 PCC8801_1248 -174 5.4 ATAGATAAATGTCTAT
Microcystis aeruginosa NIES-843 MAE_62100 -196 4.7 ATAGGTTTAAATCAAT
-111 4.9 ATAGATTTATAACAAT
-80 5 ATAAAGTTTTGTCTAT
Nostoc sp. PCC 7120 all2133 -191 4.6 ATAGAATTTTGGCTCT
-173 4.8 ATAAATATTGATCTAT
Synechococcus sp. PCC 7002 SYNPCC7002_A0472 -131 4.6 ATAGACTTAAAGATAT
-99 4.2 ATAGAGTCTTGTCTTT
Synechocystis sp. PCC 6803 slr1513 -182 4.7 ATAGACTTTAGCTTAT
-136 5 ATAGACAAGAGTCTAT
Position: -45
Score: 5.3
Sequence: ATAGACTAAAGACTAT
Locus tag: sll0834
sll0834 -45 5.3 ATAGACTAAAGACTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bicA
Ortholog function: Bicarbonate transporter
Synechococcus sp. PCC 7002 SYNPCC7002_A2371 -123 5.2 ATAGATATTAAACTAT
Synechocystis sp. PCC 6803 sll0834 -76 4.4 CTAGAATATTCTCTAT
-45 5.3 ATAGACTAAAGACTAT
Position: -208
Score: 4.5
Sequence: TTGGATATTTATCTAT
Locus tag: slr0040
slr0040 -208 4.5 TTGGATATTTATCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cmpA
Ortholog function: Bicarbontate ABC transporter, substrate-binding protein
Cyanothece sp. ATCC 51142 cce_0305 -299 4.9 ATAGATAAATACCTAT
Cyanothece sp. PCC 7425 Cyan7425_4925 -286 5.2 ATAGACTTAGGGCTAT
Cyanothece sp. PCC 8801 PCC8801_3521 -268 4.5 ATACATATTAAGCTAT
Microcystis aeruginosa NIES-843 MAE_19990 -104 4.6 ATAGCTAAATTTCTAT
Synechococcus elongatus PCC 7942 Synpcc7942_1488 -186 4.9 ATTGACTTAGCTCTAT
Synechococcus sp. JA-3-3Ab CYA_0894 -185 4.2 ATAAACGGAAGTCTAT
-153 4.4 ATTGTATTGTTTCTAT
Synechocystis sp. PCC 6803 slr0040 -208 4.5 TTGGATATTTATCTAT
Thermosynechococcus elongatus BP-1 null -124 4.1 ATAGATTGTTTGCAAT
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