Propagation of KdgR regulog to Pectobacterium carotovorum WPP14
| Source regulog: | KdgR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | IclR |
| Regulation mode: | repressor (activator) |
| Biological process: | Pectin and polygalacturonate utlization |
| Effector: | 2-keto-3-deoxygluconate |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Pectobacterium carotovorum WPP14 |
| Orthologous TF(s) | null |
| Regulated genes | 31 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -85
Score: 6.1 Sequence: TAATAAAACATCGTTTCATTT
Locus tag: null
|
||||
| null | -85 | 6.1 | TAATAAAACATCGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tpfX | ||||
| Ortholog function: ThiJ/PfpI-family hypothetical protein | ||||
| Salmonella typhimurium LT2 | STM1931 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_01049 | -199 | 5.4 | TTTTGAAATGATGTTTCATAT |
| Enterobacter sp. 638 | Ent638_2477 | -42 | 5 | GGATGAAACGCTGTTTTAAAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0102 | -85 | 6.1 | TAATAAAACATCGTTTCATTT |
|
Position: -291
Score: 5.6 Sequence: ATATAAAACAGCATTTCATAT
Locus tag: null
|
||||
| null | -291 | 5.6 | ATATAAAACAGCATTTCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiA | ||||
| Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04899 | -138 | 5.1 | TTTTAAACCATCGTTTCAATT |
| -50 | 4.8 | AACTAAAACAATGTTTTAACG | ||
| Enterobacter sp. 638 | Ent638_3876 | -134 | 4.5 | TTTCAAACCATCGTTTCAAAA |
| -49 | 4.8 | AACTAAAACAACGTTTTAACG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0357 | -239 | 5.6 | ATATAAAACAGCATTTCATAT |
|
Position: -41
Score: 5.1 Sequence: TTGTAAAACAGGGTTTCATTT
Locus tag: null
|
||||
| null | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yjgK | ||||
| Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
| Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
| Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
| Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
| Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
| Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
|
Position: -70
Score: 6.2 Sequence: AAATAAAACGGCGTTTCATTT
Locus tag: null
|
||||
| null | -70 | 6.2 | AAATAAAACGGCGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygjV | ||||
| Ortholog function: putative transport protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3090 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA |
| Yersinia pestis KIM | y3597 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0648 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT |
|
Position: -97
Score: 5.6 Sequence: AAATAAAACCTCGTTTCTTTT
Locus tag: null
|
||||
| null | -97 | 5.6 | AAATAAAACCTCGTTTCTTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sghX | ||||
| Ortholog function: putative exported protein | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0732 | -98 | 5.6 | AAATAAAACCTCGTTTCTTTT |
| -76 | 4 | TATCACAATAAGGTTCCATTT | ||
|
Position: -38
Score: 5.4 Sequence: AACTGAAATATTGTTTCATCT
Locus tag: null
|
||||
| null | -38 | 5.4 | AACTGAAATATTGTTTCATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: togT | ||||
| Ortholog function: Oligogalacturonide transporter | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02398 | -46 | 5.2 | TATAAAAACAGTGTTTCAAAA |
| Yersinia pestis KIM | y2961 | -47 | 4.5 | AAAGAAAACAGTTATTCATTA |
| -25 | 6.1 | AAATGAAACATTGTTTTAATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0817 | -60 | 4.5 | TAAAGAAATGATAGTTCAATC |
| -38 | 5.5 | AACTGAAATATTGTTTCATAT | ||
|
Position: -98
Score: 4.3 Sequence: TTCTATAAAGGTGTTTTATTT
Locus tag: null
|
||||
| null | -98 | 4.3 | TTCTATAAAGGTGTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pehA | ||||
| Ortholog function: Polygalacturonase (EC 3.2.1.15) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1095 | -152 | 3.9 | TATGTAAATGGACTTTTATTA |
| -100 | 4.3 | TTCTATAAAAGTGTTTTATTT | ||
| -65 | 3.9 | AAAGGAAGCGTAATTCCTTTT | ||
|
Position: -37
Score: 5.8 Sequence: TATTAAAACGATATTTCATTT
Locus tag: null
|
||||
| null | -37 | 5.8 | TATTAAAACGATATTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pehN | ||||
| Ortholog function: putative polygalacturonase | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1190 | -37 | 5.7 | TATTAAAACGATATTTCATTA |
|
Position: -94
Score: 5.6 Sequence: TAATGAAATGGCGTTTTAATA
Locus tag: null
|
||||
| null | -94 | 5.6 | TAATGAAATGGCGTTTTAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsR | ||||
| Ortholog function: PEP synthetase regulatory protein | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
| Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
| Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
| Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |
|
Position: -226
Score: 5.6 Sequence: TATTAAAACGCCATTTCATTA
Locus tag: null
|
||||
| null | -226 | 5.6 | TATTAAAACGCCATTTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppsA | ||||
| Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1702 | -222 | 5.3 | TATGAAAACAGCATTTCATTT |
| Salmonella typhimurium LT2 | STM1349 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT |
| Citrobacter koseri ATCC BAA-895 | CKO_01725 | -249 | 5.5 | AAATGAAACGCTATTTTTATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT |
| Enterobacter sp. 638 | Ent638_1745 | -249 | 5.3 | AAATGAAATGGTGTTTTTAAT |
| Serratia proteamaculans 568 | Spro_2174 | -364 | 5.2 | AAgTaAAACAcTaTTTCAaaT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1853 | -227 | 5.6 | TATTAAAACGCCATTTCATTA |
|
Position: -277
Score: 5.1 Sequence: ATACGGAACGTCGTTTCAATT
Locus tag: null
|
||||
| null | -277 | 5.1 | ATACGGAACGTCGTTTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pykF | ||||
| Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
| Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
| Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
| Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
| Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
|
Position: -145
Score: 6.1 Sequence: AAATGAAATAATGTTTTATTT
Locus tag: null
|
||||
| null | -145 | 6.1 | AAATGAAATAATGTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgF | ||||
| Ortholog function: Pectin degradation protein KdgF | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
| Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
| Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
|
Position: -10
Score: 5.3 Sequence: AATCAAAACAGTGTTTCTATT
Locus tag: null
|
||||
| null | -10 | 5.3 | AATCAAAACAGTGTTTCTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelW | ||||
| Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9) | ||||
| Yersinia pestis KIM | y1885 | -152 | 4.5 | AATCAAAACAACGTTCCGACT |
| -76 | 5.2 | GATTGAAACGATGTTTCTATT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2402 | -139 | 4.5 | AATCAAAACAACGTTCCGACT |
| -61 | 5.3 | AATCAAAACAGTGTTTCTATT | ||
|
Position: -179
Score: 5.8 Sequence: AAATGAAACATTGTTTCTATA
Locus tag: null
|
||||
| null | -179 | 5.8 | AAATGAAACATTGTTTCTATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ogl | ||||
| Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
| Enterobacter sp. 638 | Ent638_3293 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
| Yersinia pestis KIM | y1875 | -96 | 5.8 | AAATGAAACATTGTTTCTATA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2426 | -180 | 5.8 | AAATGAAACATTGTTTCTATA |
|
Position: -88
Score: 5 Sequence: TAATGAAACAAGATTTCTGTT
Locus tag: null
|
||||
| null | -88 | 5 | TAATGAAACAAGATTTCTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sotA | ||||
| Ortholog function: sugar efflux transporter | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2730 | -88 | 5 | TAATGAAACAAGATTTCTGTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2730 | -88 | 5 | TAATGAAACAAGATTTCTGTT |
|
Position: -124
Score: 4.8 Sequence: AACAGAAACGCTATTTTAAAA
Locus tag: null
|
||||
| null | -124 | 4.8 | AACAGAAACGCTATTTTAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yeeO | ||||
| Ortholog function: predicted multidrug efflux system, MATE family | ||||
| Escherichia coli str. K-12 substr. MG1655 | b1985 | -7 | 4.9 | ATTTGAAATGTGGTTTCACTT |
| Salmonella typhimurium LT2 | STM2013 | -7 | 5 | TATTGAAATGTGGTTTCAACT |
| Citrobacter koseri ATCC BAA-895 | CKO_00837 | -7 | 4.9 | ATTTGAAATGAGGTTTCAACT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02447 | -40 | 5.1 | ATTTGAAATGTTGTTTCAACA |
| Enterobacter sp. 638 | Ent638_2574 | -74 | 5 | ATTTGAAATGTAGTTTCAACT |
| Yersinia pestis KIM | y2593 | -158 | 4.8 | TCATGAAACTATGTTCCATTT |
| Serratia proteamaculans 568 | Spro_3106 | -39 | 5.2 | ATTTGAAATGTTGTTTCACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2762 | -140 | 5.1 | AATAGAAACGTCATTTTAAAA |
|
Position: -293
Score: 4.9 Sequence: TAATGAAACCATGTTTTACCA
Locus tag: null
|
||||
| null | -293 | 4.9 | TAATGAAACCATGTTTTACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelF | ||||
| Ortholog function: Pectate lyase precursor (EC 4.2.2.2) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3112 | -291 | 4.9 | TAATGAAACCATGTTTTACCA |
|
Position: -199
Score: 5.2 Sequence: TATTAAAATAATATTTCACTT
Locus tag: null
|
||||
| null | -199 | 5.2 | TATTAAAATAATATTTCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: paeY | ||||
| Ortholog function: pectin acetylesterase | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3252 | -213 | 5.1 | TATTAAAATAACATTTCACTT |
|
Position: -288
Score: 4.6 Sequence: AAAAAAAACGCCATTTTTCAA
Locus tag: null
|
||||
| null | -288 | 4.6 | AAAAAAAACGCCATTTTTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rhiT | ||||
| Ortholog function: Rhamnogalacturonide transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01081 | -190 | 5.4 | AATAGAAACGCTGTTTTATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02390 | -200 | 4.9 | AAGAGAAATGCTGTTTTATAA |
| Enterobacter sp. 638 | Ent638_2444 | -189 | 5.6 | AAAAGAAACGCTGTTTTATAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3560 | -167 | 4.7 | AGTTAAAATGCCTTTTTATAA |
|
Position: -102
Score: 4.5 Sequence: AGACAAACCTTAATTTTATTT
Locus tag: null
|
||||
| null | -102 | 4.5 | AGACAAACCTTAATTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelC | ||||
| Ortholog function: Pectate lyase B precursor (EC 4.2.2.2) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4069 | -289 | 5.4 | AAACGAAATATAATTTTATTT |
| -102 | 4.5 | CAATAAACCTTGATTTCATTT | ||
| -2 | 4.1 | AAATGAAACGTTCTCTTCTGT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4067 | -231 | 4.2 | AAATAGAAATCAGTTTCTATT |
| -99 | 4.5 | AGACAAACCTTAATTTCATTT | ||
| -77 | 4.1 | TGTTGAAACAGCCATTTTATT | ||
|
Position: -258
Score: 4.5 Sequence: TAATAAAACGAAATATAATTT
Position: -253
Score: 5.4 Sequence: AAACGAAATATAATTTTATTT
Locus tag: null
|
||||
| null | -258 | 4.5 | TAATAAAACGAAATATAATTT | |
| -253 | 5.4 | AAACGAAATATAATTTTATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelC | ||||
| Ortholog function: Pectate lyase B precursor (EC 4.2.2.2) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4069 | -289 | 5.4 | AAACGAAATATAATTTTATTT |
| -102 | 4.5 | CAATAAACCTTGATTTCATTT | ||
| -2 | 4.1 | AAATGAAACGTTCTCTTCTGT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4067 | -231 | 4.2 | AAATAGAAATCAGTTTCTATT |
| -99 | 4.5 | AGACAAACCTTAATTTCATTT | ||
| -77 | 4.1 | TGTTGAAACAGCCATTTTATT | ||
|
Position: -137
Score: 5.9 Sequence: TAATAAAACTACGTTTCATTT
Locus tag: null
|
||||
| null | -137 | 5.9 | TAATAAAACTACGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: rexZ | ||||
| Ortholog function: transcriptional regulator of exoenzymes | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4123 | -138 | 5.9 | TAATAAAACTATGTTTCATTT |
| -66 | 4.4 | AAATAAATTACCGTTGCGTTA | ||
|
Position: -125
Score: 5 Sequence: AAATAAAACATCGTTTCAAGG
Locus tag: null
|
||||
| null | -125 | 5 | AAATAAAACATCGTTTCAAGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: kdgK | ||||
| Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
| Yersinia pestis KIM | y3838 | -225 | 5.1 | ATTTAAAACACCGTTTTAATC |
| Serratia proteamaculans 568 | Spro_4750 | -105 | 6.2 | AAATAAAACGTTGTTTTATTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4360 | -125 | 5.4 | AAATAAAACATCGTTTCAAGA |
| Edwardsiella tarda EIB202 | ETAE_3377 | -91 | 5.4 | AAACAGAACGTTGTTTTATTT |
|
Position: -66
Score: 6 Sequence: AAAAGAAACAGCGTTTCATTT
Locus tag: null
|
||||
| null | -66 | 6 | AAAAGAAACAGCGTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pelX | ||||
| Ortholog function: Pectate disaccharide-lyase | ||||
| Enterobacter sp. 638 | Ent638_4134 | -102 | 5.2 | AAGCAAAACAACGTTTTAATT |
| -60 | 5.7 | AAAAGAAACGACGTTTCATCT | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4510 | -130 | 5.3 | AAATGACACGGTGTTTCATAA |
| -113 | 4.2 | ATAAAAAACAGACTTTATTTT | ||
| -66 | 6 | AAAAGAAACAGCGTTTCATTT | ||