Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Providencia rustigianii DSM 4541

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Providencia rustigianii DSM 4541
Orthologous TF(s) PROVRUST_03668
Regulated genes 70
Built upon 685 sites [see more]
Predicted regulatory interactions in Providencia rustigianii DSM 4541
Locus tag Position Score Sequence
Position: -250
Score: 3.8
Sequence: GTGATCTTAATCAC
Locus tag: PROVRUST_00129
PROVRUST_00129 -250 3.8 GTGATCTTAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase protein I
Citrobacter koseri ATCC BAA-895 CKO_00079 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4125 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3481 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3739 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3057 -130 4
Salmonella typhimurium LT2 STM3872 -122 4.2 TTGTTTGAAATCAC
Position: -272
Score: 4.9
Sequence: TTGATATGTATCAA
Locus tag: PROVRUST_00205
PROVRUST_00205 -272 4.9 TTGATATGTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: -29
Score: 3.2
Sequence: TAGATTGATGTAAA
Locus tag: PROVRUST_00380
PROVRUST_00380 -29 3.2 TAGATTGATGTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmA
Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Citrobacter koseri ATCC BAA-895 CKO_00574 -35 3.4 TTGCCCGACATCAG
Edwardsiella tarda EIB202 ETAE_2461 -396 4.3 TTGCTATATATCAG
5 3.5 GCGATTAAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1882 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2201 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02081 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2254 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3819 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1567 -302 4 TGGATTTTTAACAA
Position: 0
Score: 4.1
Sequence: ATGATTAAAATTAA
Locus tag: PROVRUST_00445
PROVRUST_00445 0 4.1 ATGATTAAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -135
Score: 5.2
Sequence: TTGTTTTAAATCAA
Locus tag: PROVRUST_00733
PROVRUST_00733 -135 5.2 TTGTTTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -147
Score: 3.9
Sequence: CTGATAATCAACAA
Locus tag: PROVRUST_00776
PROVRUST_00776 -147 3.9 CTGATAATCAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfA
Ortholog function: Hydrogenase-4 component A (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1247 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2481 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2528 -114 4.9 TTGATTTTTAACAA
Position: 36
Score: 3.4
Sequence: CTGATGATGATCAC
Locus tag: PROVRUST_00780
PROVRUST_00780 36 3.4 CTGATGATGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfE
Ortholog function: Hydrogenase-4 component E (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1243 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2485 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2524 -114 4.9 TTGATTTTTAACAA
Position: -224
Score: 4.2
Sequence: GTGATTTAAATCAC
Position: -3
Score: 3.5
Sequence: CTCATGTCAAACAA
Locus tag: PROVRUST_00873
PROVRUST_00873 -224 4.2 GTGATTTAAATCAC
-3 3.5 CTCATGTCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Edwardsiella tarda EIB202 ETAE_0311 19 3.5 TTGAAGAAGATCTA
Enterobacter sp. 638 Ent638_0326 -184 3.6 TTAATAATTATCAT
Erwinia amylovora ATCC 49946 EAM_0416 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 0 3.5 ATGTTAAACAACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Proteus mirabilis HI4320 PMI2546 -202 3.7 ATGAGATAGATCAC
Position: -132
Score: 3.6
Sequence: ATGGGTTATATCAA
Locus tag: PROVRUST_00903
PROVRUST_00903 -132 3.6 ATGGGTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Citrobacter koseri ATCC BAA-895 CKO_00538 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3117 -301 3.8 GTGATCAAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4167 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02645 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4120 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3590 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2282 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0198 -305 4.3 TTGATAAGGAACAA
Position: -347
Score: 4.3
Sequence: TTGATAAGGAACAA
Locus tag: PROVRUST_00904
PROVRUST_00904 -347 4.3 TTGATAAGGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -112
Score: 4.3
Sequence: TTGTTCCTTATCAA
Locus tag: PROVRUST_00905
PROVRUST_00905 -112 4.3 TTGTTCCTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -78
Score: 3.9
Sequence: ACTATTTAAATCAA
Locus tag: PROVRUST_01008
PROVRUST_01008 -78 3.9 ACTATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltD
Ortholog function: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3213 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03625 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4010 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3676 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4345 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0129 -72 3.8 CTGTCTGATATCAA
Position: -253
Score: 3.6
Sequence: TTGTTTGGAATTAA
Position: -113
Score: 4
Sequence: ATGATTTTCATTAA
Position: -107
Score: 4.2
Sequence: TTCATTAACAACAA
Locus tag: PROVRUST_01211
PROVRUST_01211 -253 3.6 TTGTTTGGAATTAA
-113 4 ATGATTTTCATTAA
-107 4.2 TTCATTAACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Enterobacter sp. 638 Ent638_4063 -132 3.6 ATGATACAAAAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -143 3.5 ATGAAGTAAAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -146 4.2 TTGTTCTACATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -346 3.6 TTATGTCAAATCAA
Proteus mirabilis HI4320 PMI3036 -164 3.8 TTTATTTAAAATAA
-85 4 ATGATTTTCATTAA
Position: -147
Score: 3.3
Sequence: ATGAGTAAAAAAAA
Locus tag: PROVRUST_01242
PROVRUST_01242 -147 3.3 ATGAGTAAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -232 4.7 TTGTTATATAACAA
Escherichia coli str. K-12 substr. MG1655 b1761 -397 3.9 TTGATCCTGATAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -272 4 ATGATGAATGACAA
Proteus mirabilis HI4320 PMI3008 -176 3.6 TTTAGTGAGGTCAA
Salmonella typhimurium LT2 STM1299 -51 3.4 CTGATAAAACGCAA
Yersinia pestis KIM y3858 -231 3.6 TTGAGTAACGTTAA
Position: -184
Score: 4.7
Sequence: TTGACCTAAAACAA
Locus tag: PROVRUST_01290
PROVRUST_01290 -184 4.7 TTGACCTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: 9
Score: 3.6
Sequence: TTGCTACAAGTCAG
Locus tag: PROVRUST_01386
PROVRUST_01386 9 3.6 TTGCTACAAGTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoC
Ortholog function: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family
Citrobacter koseri ATCC BAA-895 CKO_04832 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3823 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3410 -203 4.4 TTGAGCCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0207 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2922 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3507 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4630 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3910 -93 4 ATTATTTAAATCAT
Position: -98
Score: 3.7
Sequence: ATAATAATTATCAA
Position: -60
Score: 3.4
Sequence: TTGATTGAAAATGA
Position: -41
Score: 4.5
Sequence: TTCATTTCAATCAA
Locus tag: PROVRUST_01388
PROVRUST_01388 -98 3.7 ATAATAATTATCAA
-60 3.4 TTGATTGAAAATGA
-41 4.5 TTCATTTCAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Citrobacter koseri ATCC BAA-895 CKO_04830 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3821 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3408 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03778 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0209 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2920 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3505 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4628 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3912 -93 4 ATTATTTAAATCAT
Position: 21
Score: 3.5
Sequence: CTGAATCACAACAA
Locus tag: PROVRUST_01399
PROVRUST_01399 21 3.5 CTGAATCACAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: phoU
Ortholog function: Phosphate transport system regulatory protein PhoU
Citrobacter koseri ATCC BAA-895 CKO_00061 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3542 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4473 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3724 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0218 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2897 -46 4 TTGATAGATGTCGA
Position: -142
Score: 4.8
Sequence: TTGATCAAAAACAA
Locus tag: PROVRUST_01845
PROVRUST_01845 -142 4.8 TTGATCAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrfA
Ortholog function: Nitrite reductase, cytochrome c(552)
Citrobacter koseri ATCC BAA-895 CKO_03814 -146 4.7 TTGATTAAAGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1875 -135 4.8 TTGATCAAAAACAA
Escherichia coli str. K-12 substr. MG1655 b4070 -141 4.7 TTGATTAAAGACAA
Salmonella typhimurium LT2 STM4277 -143 4.7 TTGATTAAAGACAA
Position: -253
Score: 3.5
Sequence: TTGCTAAATGTTAA
Position: -214
Score: 3.5
Sequence: TTGTTGTTTAAGAA
Position: -211
Score: 3.2
Sequence: TTGTTTAAGAATAT
Position: -104
Score: 3.2
Sequence: TTGATAATTAGCTA
Locus tag: PROVRUST_01846
PROVRUST_01846 -253 3.5 TTGCTAAATGTTAA
-214 3.5 TTGTTGTTTAAGAA
-211 3.2 TTGTTTAAGAATAT
-104 3.2 TTGATAATTAGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: 21
Score: 3.3
Sequence: TTTATGAAAGCCAA
Locus tag: PROVRUST_01848
PROVRUST_01848 21 3.3 TTTATGAAAGCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napA
Ortholog function: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Citrobacter koseri ATCC BAA-895 CKO_00569 -35 3.4 TTGCCCGACATCAG
Escherichia coli str. K-12 substr. MG1655 b2206 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2259 -90 3.3 CTTATTTACAAAAA
Position: -93
Score: 4.7
Sequence: TTGTGTTAAATCAA
Locus tag: PROVRUST_01853
PROVRUST_01853 -93 4.7 TTGTGTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmC
Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Citrobacter koseri ATCC BAA-895 CKO_00577 -136 3.6 TTGACTGGCGACAA
Edwardsiella tarda EIB202 ETAE_2459 -114 3.5 TTATTGTATATAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1884 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2199 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02079 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2252 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3817 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1569 -302 4 TGGATTTTTAACAA
Position: -109
Score: 4.5
Sequence: TTAATGTAGATCAA
Locus tag: PROVRUST_01877
PROVRUST_01877 -109 4.5 TTAATGTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Edwardsiella tarda EIB202 ETAE_2215 -113 4.4 TTGCGTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -114 4.4 TTGCGCTAAATCAA
Proteus mirabilis HI4320 PMI2112 -131 4.4 TTGCGTTAGATCAA
Serratia proteamaculans 568 Spro_1666 -66 4.4 TTGCGCTAAATCAA
Yersinia pestis KIM y2819 -115 4.1 TTGCGTCAAATCAA
Position: -191
Score: 5.1
Sequence: TTGATATTTATCAA
Position: -139
Score: 5
Sequence: CTGATTTAAATCAA
Locus tag: PROVRUST_02103
PROVRUST_02103 -191 5.1 TTGATATTTATCAA
-139 5 CTGATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -180
Score: 5
Sequence: TTGATTTAAATCAG
Position: -128
Score: 5.1
Sequence: TTGATAAATATCAA
Locus tag: PROVRUST_02104
PROVRUST_02104 -180 5 TTGATTTAAATCAG
-128 5.1 TTGATAAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -120
Score: 4
Sequence: ATGATATCCATCAT
Locus tag: PROVRUST_02331
PROVRUST_02331 -120 4 ATGATATCCATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -302
Score: 3.8
Sequence: TTGTGTATAGTCAA
Locus tag: PROVRUST_02341
PROVRUST_02341 -302 3.8 TTGTGTATAGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nuoA
Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00508 -198 4 TCGATGTAAATTAA
Edwardsiella tarda EIB202 ETAE_2385 -292 3.7 TTGATGTAAACGAA
Escherichia coli str. K-12 substr. MG1655 b2288 -433 3.7 ATGATGTTAAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02678 -392 3.6 TTGATTTACGACGG
Photorhabdus luminescens subsp. laumondii TTO1 plu3089 -207 3.8 TTGTTATTTGTAAA
Salmonella typhimurium LT2 STM2328 -199 4.6 TTGATGTAAATTAA
Serratia proteamaculans 568 Spro_3308 -280 3.8 TTTCTACACATCAA
Yersinia pestis KIM y1630 -465 3.6 TTTTATTAAAACAA
Position: -262
Score: 3.4
Sequence: TTGAGTTTGATAAT
Position: -84
Score: 3.8
Sequence: TTAATTAATATAAA
Position: -80
Score: 4.7
Sequence: TTAATATAAATCAA
Locus tag: PROVRUST_02365
PROVRUST_02365 -262 3.4 TTGAGTTTGATAAT
-84 3.8 TTAATTAATATAAA
-80 4.7 TTAATATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Edwardsiella tarda EIB202 ETAE_2844 -271 3.4 TTATTTTTTATTAA
Enterobacter sp. 638 Ent638_2479 -93 3.6 TTGAATTTATACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -279 3.7 TTTATTTTCATGAA
-243 4.5 TAGATTTAGATCAA
Escherichia coli str. K-12 substr. MG1655 b4123 -283 4 CCGATAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04367 -210 3.4 TCTACTCATATCAA
Proteus mirabilis HI4320 PMI0389 -78 3.4 TTGTTTTTTTGCAA
Salmonella typhimurium LT2 STM4301 -72 3.5 TTCACAAAAATCAG
Serratia proteamaculans 568 Spro_3863 -189 3.8 CAGATTAAAATCAA
Yersinia pestis KIM y0901 -239 3.4 TTAATTTAAAGCAC
Position: -150
Score: 4.6
Sequence: TTGACTTGCATCAA
Locus tag: PROVRUST_02493
PROVRUST_02493 -150 4.6 TTGACTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -71
Score: 4.3
Sequence: CTGATTTGAAACAA
Locus tag: PROVRUST_02507
PROVRUST_02507 -71 4.3 CTGATTTGAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
Position: -100
Score: 5
Sequence: TTGACCTAAATCAA
Locus tag: PROVRUST_02560
PROVRUST_02560 -100 5 TTGACCTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -97
Score: 4
Sequence: ATCATAAATATCAA
Locus tag: PROVRUST_02652
PROVRUST_02652 -97 4 ATCATAAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Citrobacter koseri ATCC BAA-895 CKO_03906 -162 4.2 TTTATTGTTATCAA
Enterobacter sp. 638 Ent638_0218 -111 4 TTGATTTTAGAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04395 -154 4.1 TTCATTGTTATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -61 4
Proteus mirabilis HI4320 PMI2764 -64 4.2
Position: -143
Score: 3.3
Sequence: TTGTTATCTATCTT
Position: -124
Score: 4.2
Sequence: TTGCTCTATGACAA
Locus tag: PROVRUST_02676
PROVRUST_02676 -143 3.3 TTGTTATCTATCTT
-124 4.2 TTGCTCTATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946 EAM_0260 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0626 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4039 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4378 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2753 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4464 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0568 -253 3.3 CTGATATTTATAAT
Position: 10
Score: 4
Sequence: TTGTGAAAAAACAA
Locus tag: PROVRUST_02897
PROVRUST_02897 10 4 TTGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -316
Score: 5
Sequence: TTGACTTAGATCAA
Locus tag: PROVRUST_02906
PROVRUST_02906 -316 5 TTGACTTAGATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Proteus mirabilis HI4320 PMI0573 -312 4.5 TTGATGTGGGTCAA
Yersinia pestis KIM y3063 -314 5.1 TTGTTCTAAATCAA
-263 4.4 TTGTCGTAGATCAA
Position: -185
Score: 3.9
Sequence: GTTATTAACATCAA
Position: -108
Score: 4.1
Sequence: TTGTTTTTTATCAC
Locus tag: PROVRUST_02948
PROVRUST_02948 -185 3.9 GTTATTAACATCAA
-108 4.1 TTGTTTTTTATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: 24
Score: 3.3
Sequence: TTGATTTCTCTAGA
Locus tag: PROVRUST_02984
PROVRUST_02984 24 3.3 TTGATTTCTCTAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: -187
Score: 3.3
Sequence: TTTATTGGCATAAA
Position: -27
Score: 3.3
Sequence: TTGGTCCTAATCAG
Locus tag: PROVRUST_03008
PROVRUST_03008 -187 3.3 TTTATTGGCATAAA
-27 3.3 TTGGTCCTAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -279
Score: 4.5
Sequence: TTGATTTCAATCAC
Position: -159
Score: 4.2
Sequence: ATCATTAAAATCAA
Position: -85
Score: 4.5
Sequence: ATGATCCACATCAA
Locus tag: PROVRUST_03124
PROVRUST_03124 -279 4.5 TTGATTTCAATCAC
-159 4.2 ATCATTAAAATCAA
-85 4.5 ATGATCCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -144
Score: 3.9
Sequence: TTTATTCAAGACAA
Position: -48
Score: 3.6
Sequence: TTTATTTAAATTAG
Locus tag: PROVRUST_03126
PROVRUST_03126 -144 3.9 TTTATTCAAGACAA
-48 3.6 TTTATTTAAATTAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: -177
Score: 5
Sequence: TTGATCTGAATCAA
Position: -128
Score: 3.8
Sequence: TTGATGTTTAACTA
Position: -77
Score: 4.2
Sequence: TTGATTTTAGGCAA
Locus tag: PROVRUST_03195
PROVRUST_03195 -177 5 TTGATCTGAATCAA
-128 3.8 TTGATGTTTAACTA
-77 4.2 TTGATTTTAGGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
Enterobacter sp. 638 Ent638_2055 -77 3.9 TTGATTTGACGCAA
Enterobacter sp. 638 Ent638_2054 -77 3.9 TTGATTTGACGCAA
Escherichia coli str. K-12 substr. MG1655 b1474 -133 4.4 TTGAGGTAGGTCAA
Salmonella typhimurium LT2 STM1570 -126 3.9 TTGATTTGACGCAA
Position: -41
Score: 4.6
Sequence: TTGACTCATATCAA
Locus tag: PROVRUST_03668
PROVRUST_03668 -41 4.6 TTGACTCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -148
Score: 5.1
Sequence: TTGATTCAAATCAA
Locus tag: PROVRUST_03840
PROVRUST_03840 -148 5.1 TTGATTCAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -244
Score: 4
Sequence: GTGATTTAGATCAC
Locus tag: PROVRUST_03857
PROVRUST_03857 -244 4 GTGATTTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
© 2009-2020 RegPrecise