Propagation of Fnr regulog to Providencia rustigianii DSM 4541
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Providencia rustigianii DSM 4541 |
| Orthologous TF(s) | PROVRUST_03668 |
| Regulated genes | 70 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -250
Score: 3.8 Sequence: GTGATCTTAATCAC
Locus tag: PROVRUST_00129
|
||||
| PROVRUST_00129 | -250 | 3.8 | GTGATCTTAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpI | ||||
| Ortholog function: ATP synthase protein I | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00079 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4125 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3481 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4519 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3739 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04144 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0047 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3057 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3872 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -272
Score: 4.9 Sequence: TTGATATGTATCAA
Locus tag: PROVRUST_00205
|
||||
| PROVRUST_00205 | -272 | 4.9 | TTGATATGTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -29
Score: 3.2 Sequence: TAGATTGATGTAAA
Locus tag: PROVRUST_00380
|
||||
| PROVRUST_00380 | -29 | 3.2 | TAGATTGATGTAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00574 | -35 | 3.4 | TTGCCCGACATCAG |
| Edwardsiella tarda EIB202 | ETAE_2461 | -396 | 4.3 | TTGCTATATATCAG |
| 5 | 3.5 | GCGATTAAAATCAG | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1882 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2201 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02081 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2254 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3819 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1567 | -302 | 4 | TGGATTTTTAACAA |
|
Position: 0
Score: 4.1 Sequence: ATGATTAAAATTAA
Locus tag: PROVRUST_00445
|
||||
| PROVRUST_00445 | 0 | 4.1 | ATGATTAAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA | ||||
| Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00239 | 0 | 4.2 | ATGATTAAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1196 | -205 | 4.1 | TTGAACTAAATCAC |
| Proteus mirabilis HI4320 | PMI0352 | -205 | 4.2 | TTGAGCTAAATCAC |
| Serratia proteamaculans 568 | Spro_0953 | 0 | 4.3 | ATGATTAAAATCAG |
| Yersinia pestis KIM | y0951 | 18 | 4.2 | ATGATTAAAATAAA |
|
Position: -135
Score: 5.2 Sequence: TTGTTTTAAATCAA
Locus tag: PROVRUST_00733
|
||||
| PROVRUST_00733 | -135 | 5.2 | TTGTTTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrdD | ||||
| Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03580 | -235 | 4.2 | TTGATGCAAATCAC |
| Edwardsiella tarda EIB202 | ETAE_0423 | -196 | 4.7 | TTGATTCAGGTCAA |
| Enterobacter sp. 638 | Ent638_0437 | -244 | 4.7 | TTGTTCTGAATCAA |
| -213 | 4.2 | TTGATGCAAATCAC | ||
| Erwinia amylovora ATCC 49946 | EAM_3059 | -106 | 4.2 | TTGCTTCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0375 | -182 | 4.8 | TTGCTCTACATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4238 | -249 | 4.8 | TTGAGCTACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04646 | -248 | 4.2 | TTGTTCTGGGTCAA |
| -217 | 4.2 | TTGATGCAAATCAC | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4499 | -160 | 4.7 | TTGTTTCAGATCAA |
| Proteus mirabilis HI4320 | PMI3451 | -184 | 4.9 | TTGATTTAGATCAG |
| Salmonella typhimurium LT2 | STM4452 | -249 | 5 | TTGTTCTACATCAA |
| -218 | 4.2 | TTGATGCAAATCAC | ||
| Serratia proteamaculans 568 | Spro_0525 | -217 | 4.7 | TTGTTCTACGTCAA |
| Yersinia pestis KIM | y0733 | -192 | 4.6 | TTGTTCTAGGTCAA |
|
Position: -147
Score: 3.9 Sequence: CTGATAATCAACAA
Locus tag: PROVRUST_00776
|
||||
| PROVRUST_00776 | -147 | 3.9 | CTGATAATCAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfA | ||||
| Ortholog function: Hydrogenase-4 component A (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1247 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2481 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2528 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: 36
Score: 3.4 Sequence: CTGATGATGATCAC
Locus tag: PROVRUST_00780
|
||||
| PROVRUST_00780 | 36 | 3.4 | CTGATGATGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfE | ||||
| Ortholog function: Hydrogenase-4 component E (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1243 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2485 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2524 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -224
Score: 4.2 Sequence: GTGATTTAAATCAC
Position: -3
Score: 3.5 Sequence: CTCATGTCAAACAA
Locus tag: PROVRUST_00873
|
||||
| PROVRUST_00873 | -224 | 4.2 | GTGATTTAAATCAC | |
| -3 | 3.5 | CTCATGTCAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_0311 | 19 | 3.5 | TTGAAGAAGATCTA |
| Enterobacter sp. 638 | Ent638_0326 | -184 | 3.6 | TTAATAATTATCAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | 0 | 3.5 | ATGTTAAACAACAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -362 | 4.2 | TTGATTTGGATGAA |
| -198 | 3.8 | ATCACATATATCAA | ||
| Proteus mirabilis HI4320 | PMI2546 | -202 | 3.7 | ATGAGATAGATCAC |
|
Position: -132
Score: 3.6 Sequence: ATGGGTTATATCAA
Locus tag: PROVRUST_00903
|
||||
| PROVRUST_00903 | -132 | 3.6 | ATGGGTTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpQ | ||||
| Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00538 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3117 | -301 | 3.8 | GTGATCAAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4167 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02645 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4120 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3590 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2282 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0198 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -347
Score: 4.3 Sequence: TTGATAAGGAACAA
Locus tag: PROVRUST_00904
|
||||
| PROVRUST_00904 | -347 | 4.3 | TTGATAAGGAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: Glycerol-3-phosphate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3116 | -301 | 3.8 | GTGATCAAAATCAC |
| Enterobacter sp. 638 | Ent638_2804 | -197 | 4.2 | TTGATTTCGAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3591 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2283 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0199 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -112
Score: 4.3 Sequence: TTGTTCCTTATCAA
Locus tag: PROVRUST_00905
|
||||
| PROVRUST_00905 | -112 | 4.3 | TTGTTCCTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -78
Score: 3.9 Sequence: ACTATTTAAATCAA
Locus tag: PROVRUST_01008
|
||||
| PROVRUST_01008 | -78 | 3.9 | ACTATTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltD | ||||
| Ortholog function: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3213 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03625 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4010 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3676 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4345 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0129 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -253
Score: 3.6 Sequence: TTGTTTGGAATTAA
Position: -113
Score: 4 Sequence: ATGATTTTCATTAA
Position: -107
Score: 4.2 Sequence: TTCATTAACAACAA
Locus tag: PROVRUST_01211
|
||||
| PROVRUST_01211 | -253 | 3.6 | TTGTTTGGAATTAA | |
| -113 | 4 | ATGATTTTCATTAA | ||
| -107 | 4.2 | TTCATTAACAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Enterobacter sp. 638 | Ent638_4063 | -132 | 3.6 | ATGATACAAAAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -146 | 4.2 | TTGTTCTACATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -346 | 3.6 | TTATGTCAAATCAA |
| Proteus mirabilis HI4320 | PMI3036 | -164 | 3.8 | TTTATTTAAAATAA |
| -85 | 4 | ATGATTTTCATTAA | ||
|
Position: -147
Score: 3.3 Sequence: ATGAGTAAAAAAAA
Locus tag: PROVRUST_01242
|
||||
| PROVRUST_01242 | -147 | 3.3 | ATGAGTAAAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gdhA | ||||
| Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0051 | -232 | 4.7 | TTGTTATATAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b1761 | -397 | 3.9 | TTGATCCTGATAAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0122 | -272 | 4 | ATGATGAATGACAA |
| Proteus mirabilis HI4320 | PMI3008 | -176 | 3.6 | TTTAGTGAGGTCAA |
| Salmonella typhimurium LT2 | STM1299 | -51 | 3.4 | CTGATAAAACGCAA |
| Yersinia pestis KIM | y3858 | -231 | 3.6 | TTGAGTAACGTTAA |
|
Position: -184
Score: 4.7 Sequence: TTGACCTAAAACAA
Locus tag: PROVRUST_01290
|
||||
| PROVRUST_01290 | -184 | 4.7 | TTGACCTAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -117 | 3.6 | CTGATTTTTCTCAT |
| Enterobacter sp. 638 | Ent638_1418 | -3 | 3.8 | TCTATGAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -184 | 4.3 | TTGATACCGAACAA |
| Salmonella typhimurium LT2 | STM0964 | -96 | 4.2 | |
| Yersinia pestis KIM | y0864 | -199 | 4.2 | TTGATTCCAGACAA |
|
Position: 9
Score: 3.6 Sequence: TTGCTACAAGTCAG
Locus tag: PROVRUST_01386
|
||||
| PROVRUST_01386 | 9 | 3.6 | TTGCTACAAGTCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoC | ||||
| Ortholog function: Ferrous iron-sensisng transcriptional regulator FeoC, FeoC family | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04832 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3823 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3410 | -203 | 4.4 | TTGAGCCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0207 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2922 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3507 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4630 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3910 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -98
Score: 3.7 Sequence: ATAATAATTATCAA
Position: -60
Score: 3.4 Sequence: TTGATTGAAAATGA
Position: -41
Score: 4.5 Sequence: TTCATTTCAATCAA
Locus tag: PROVRUST_01388
|
||||
| PROVRUST_01388 | -98 | 3.7 | ATAATAATTATCAA | |
| -60 | 3.4 | TTGATTGAAAATGA | ||
| -41 | 4.5 | TTCATTTCAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: 21
Score: 3.5 Sequence: CTGAATCACAACAA
Locus tag: PROVRUST_01399
|
||||
| PROVRUST_01399 | 21 | 3.5 | CTGAATCACAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phoU | ||||
| Ortholog function: Phosphate transport system regulatory protein PhoU | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00061 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3542 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4473 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3724 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0218 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2897 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -142
Score: 4.8 Sequence: TTGATCAAAAACAA
Locus tag: PROVRUST_01845
|
||||
| PROVRUST_01845 | -142 | 4.8 | TTGATCAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -146 | 4.7 | TTGATTAAAGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1875 | -135 | 4.8 | TTGATCAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -141 | 4.7 | TTGATTAAAGACAA |
| Salmonella typhimurium LT2 | STM4277 | -143 | 4.7 | TTGATTAAAGACAA |
|
Position: -253
Score: 3.5 Sequence: TTGCTAAATGTTAA
Position: -214
Score: 3.5 Sequence: TTGTTGTTTAAGAA
Position: -211
Score: 3.2 Sequence: TTGTTTAAGAATAT
Position: -104
Score: 3.2 Sequence: TTGATAATTAGCTA
Locus tag: PROVRUST_01846
|
||||
| PROVRUST_01846 | -253 | 3.5 | TTGCTAAATGTTAA | |
| -214 | 3.5 | TTGTTGTTTAAGAA | ||
| -211 | 3.2 | TTGTTTAAGAATAT | ||
| -104 | 3.2 | TTGATAATTAGCTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2261 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: 21
Score: 3.3 Sequence: TTTATGAAAGCCAA
Locus tag: PROVRUST_01848
|
||||
| PROVRUST_01848 | 21 | 3.3 | TTTATGAAAGCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napA | ||||
| Ortholog function: Periplasmic nitrate reductase precursor (EC 1.7.99.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00569 | -35 | 3.4 | TTGCCCGACATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2206 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2259 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -93
Score: 4.7 Sequence: TTGTGTTAAATCAA
Locus tag: PROVRUST_01853
|
||||
| PROVRUST_01853 | -93 | 4.7 | TTGTGTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmC | ||||
| Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00577 | -136 | 3.6 | TTGACTGGCGACAA |
| Edwardsiella tarda EIB202 | ETAE_2459 | -114 | 3.5 | TTATTGTATATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1884 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2199 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02079 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2252 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3817 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1569 | -302 | 4 | TGGATTTTTAACAA |
|
Position: -109
Score: 4.5 Sequence: TTAATGTAGATCAA
Locus tag: PROVRUST_01877
|
||||
| PROVRUST_01877 | -109 | 4.5 | TTAATGTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Edwardsiella tarda EIB202 | ETAE_2215 | -113 | 4.4 | TTGCGTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2662 | -114 | 4.4 | TTGCGCTAAATCAA |
| Proteus mirabilis HI4320 | PMI2112 | -131 | 4.4 | TTGCGTTAGATCAA |
| Serratia proteamaculans 568 | Spro_1666 | -66 | 4.4 | TTGCGCTAAATCAA |
| Yersinia pestis KIM | y2819 | -115 | 4.1 | TTGCGTCAAATCAA |
|
Position: -191
Score: 5.1 Sequence: TTGATATTTATCAA
Position: -139
Score: 5 Sequence: CTGATTTAAATCAA
Locus tag: PROVRUST_02103
|
||||
| PROVRUST_02103 | -191 | 5.1 | TTGATATTTATCAA | |
| -139 | 5 | CTGATTTAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -180
Score: 5 Sequence: TTGATTTAAATCAG
Position: -128
Score: 5.1 Sequence: TTGATAAATATCAA
Locus tag: PROVRUST_02104
|
||||
| PROVRUST_02104 | -180 | 5 | TTGATTTAAATCAG | |
| -128 | 5.1 | TTGATAAATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Edwardsiella tarda EIB202 | ETAE_2732 | -27 | 4.3 | TTGCTCTATCTCAA |
| Proteus mirabilis HI4320 | PMI1898 | -180 | 5.2 | TTGATTTAAAACAA |
| -127 | 5.1 | TTGATATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_3682 | -189 | 4.2 | TTGACATAAAACAT |
| -136 | 4.9 | TTGACTTTAATCAA | ||
| Yersinia pestis KIM | y1282 | -180 | 4.6 | TTGATATAAAACAT |
| -127 | 5.1 | TTGATTTGAATCAA | ||
|
Position: -120
Score: 4 Sequence: ATGATATCCATCAT
Locus tag: PROVRUST_02331
|
||||
| PROVRUST_02331 | -120 | 4 | ATGATATCCATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -302
Score: 3.8 Sequence: TTGTGTATAGTCAA
Locus tag: PROVRUST_02341
|
||||
| PROVRUST_02341 | -302 | 3.8 | TTGTGTATAGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nuoA | ||||
| Ortholog function: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00508 | -198 | 4 | TCGATGTAAATTAA |
| Edwardsiella tarda EIB202 | ETAE_2385 | -292 | 3.7 | TTGATGTAAACGAA |
| Escherichia coli str. K-12 substr. MG1655 | b2288 | -433 | 3.7 | ATGATGTTAAAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02678 | -392 | 3.6 | TTGATTTACGACGG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3089 | -207 | 3.8 | TTGTTATTTGTAAA |
| Salmonella typhimurium LT2 | STM2328 | -199 | 4.6 | TTGATGTAAATTAA |
| Serratia proteamaculans 568 | Spro_3308 | -280 | 3.8 | TTTCTACACATCAA |
| Yersinia pestis KIM | y1630 | -465 | 3.6 | TTTTATTAAAACAA |
|
Position: -262
Score: 3.4 Sequence: TTGAGTTTGATAAT
Position: -84
Score: 3.8 Sequence: TTAATTAATATAAA
Position: -80
Score: 4.7 Sequence: TTAATATAAATCAA
Locus tag: PROVRUST_02365
|
||||
| PROVRUST_02365 | -262 | 3.4 | TTGAGTTTGATAAT | |
| -84 | 3.8 | TTAATTAATATAAA | ||
| -80 | 4.7 | TTAATATAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: -150
Score: 4.6 Sequence: TTGACTTGCATCAA
Locus tag: PROVRUST_02493
|
||||
| PROVRUST_02493 | -150 | 4.6 | TTGACTTGCATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -71
Score: 4.3 Sequence: CTGATTTGAAACAA
Locus tag: PROVRUST_02507
|
||||
| PROVRUST_02507 | -71 | 4.3 | CTGATTTGAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: -100
Score: 5 Sequence: TTGACCTAAATCAA
Locus tag: PROVRUST_02560
|
||||
| PROVRUST_02560 | -100 | 5 | TTGACCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -97
Score: 4 Sequence: ATCATAAATATCAA
Locus tag: PROVRUST_02652
|
||||
| PROVRUST_02652 | -97 | 4 | ATCATAAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -162 | 4.2 | TTTATTGTTATCAA |
| Enterobacter sp. 638 | Ent638_0218 | -111 | 4 | TTGATTTTAGAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04395 | -154 | 4.1 | TTCATTGTTATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -61 | 4 | |
| Proteus mirabilis HI4320 | PMI2764 | -64 | 4.2 | |
|
Position: -143
Score: 3.3 Sequence: TTGTTATCTATCTT
Position: -124
Score: 4.2 Sequence: TTGCTCTATGACAA
Locus tag: PROVRUST_02676
|
||||
| PROVRUST_02676 | -143 | 3.3 | TTGTTATCTATCTT | |
| -124 | 4.2 | TTGCTCTATGACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ubiC | ||||
| Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40) | ||||
| Erwinia amylovora ATCC 49946 | EAM_0260 | -194 | 3.8 | CTGATATTAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4039 | -70 | 3.4 | TTGCTTTACATCTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4378 | -253 | 3.8 | TTATTTTTGGTCAA |
| Proteus mirabilis HI4320 | PMI2753 | -163 | 4.3 | TTGTTTTTTCTCAA |
| Serratia proteamaculans 568 | Spro_4464 | -223 | 3.6 | TTGCTGGAGATCAC |
| Yersinia pestis KIM | y0568 | -253 | 3.3 | CTGATATTTATAAT |
|
Position: 10
Score: 4 Sequence: TTGTGAAAAAACAA
Locus tag: PROVRUST_02897
|
||||
| PROVRUST_02897 | 10 | 4 | TTGTGAAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -316
Score: 5 Sequence: TTGACTTAGATCAA
Locus tag: PROVRUST_02906
|
||||
| PROVRUST_02906 | -316 | 5 | TTGACTTAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Proteus mirabilis HI4320 | PMI0573 | -312 | 4.5 | TTGATGTGGGTCAA |
| Yersinia pestis KIM | y3063 | -314 | 5.1 | TTGTTCTAAATCAA |
| -263 | 4.4 | TTGTCGTAGATCAA | ||
|
Position: -185
Score: 3.9 Sequence: GTTATTAACATCAA
Position: -108
Score: 4.1 Sequence: TTGTTTTTTATCAC
Locus tag: PROVRUST_02948
|
||||
| PROVRUST_02948 | -185 | 3.9 | GTTATTAACATCAA | |
| -108 | 4.1 | TTGTTTTTTATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: 24
Score: 3.3 Sequence: TTGATTTCTCTAGA
Locus tag: PROVRUST_02984
|
||||
| PROVRUST_02984 | 24 | 3.3 | TTGATTTCTCTAGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -187
Score: 3.3 Sequence: TTTATTGGCATAAA
Position: -27
Score: 3.3 Sequence: TTGGTCCTAATCAG
Locus tag: PROVRUST_03008
|
||||
| PROVRUST_03008 | -187 | 3.3 | TTTATTGGCATAAA | |
| -27 | 3.3 | TTGGTCCTAATCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -279
Score: 4.5 Sequence: TTGATTTCAATCAC
Position: -159
Score: 4.2 Sequence: ATCATTAAAATCAA
Position: -85
Score: 4.5 Sequence: ATGATCCACATCAA
Locus tag: PROVRUST_03124
|
||||
| PROVRUST_03124 | -279 | 4.5 | TTGATTTCAATCAC | |
| -159 | 4.2 | ATCATTAAAATCAA | ||
| -85 | 4.5 | ATGATCCACATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -144
Score: 3.9 Sequence: TTTATTCAAGACAA
Position: -48
Score: 3.6 Sequence: TTTATTTAAATTAG
Locus tag: PROVRUST_03126
|
||||
| PROVRUST_03126 | -144 | 3.9 | TTTATTCAAGACAA | |
| -48 | 3.6 | TTTATTTAAATTAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ansB | ||||
| Ortholog function: L-asparaginase (EC 3.5.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_2179 | 0 | 3.7 | ATGAAGTTAGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2957 | -71 | 4.5 | TTGTTTAACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1616 | -55 | 3.7 | TTTATTGTTATCAT |
| Proteus mirabilis HI4320 | PMI0708 | -139 | 4.2 | TTGATTTTAAATAA |
| Yersinia pestis KIM | y2787 | 0 | 3.6 | ATGAAATATATAAA |
|
Position: -177
Score: 5 Sequence: TTGATCTGAATCAA
Position: -128
Score: 3.8 Sequence: TTGATGTTTAACTA
Position: -77
Score: 4.2 Sequence: TTGATTTTAGGCAA
Locus tag: PROVRUST_03195
|
||||
| PROVRUST_03195 | -177 | 5 | TTGATCTGAATCAA | |
| -128 | 3.8 | TTGATGTTTAACTA | ||
| -77 | 4.2 | TTGATTTTAGGCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing | ||||
| Enterobacter sp. 638 | Ent638_2055 | -77 | 3.9 | TTGATTTGACGCAA |
| Enterobacter sp. 638 | Ent638_2054 | -77 | 3.9 | TTGATTTGACGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1474 | -133 | 4.4 | TTGAGGTAGGTCAA |
| Salmonella typhimurium LT2 | STM1570 | -126 | 3.9 | TTGATTTGACGCAA |
|
Position: -41
Score: 4.6 Sequence: TTGACTCATATCAA
Locus tag: PROVRUST_03668
|
||||
| PROVRUST_03668 | -41 | 4.6 | TTGACTCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -148
Score: 5.1 Sequence: TTGATTCAAATCAA
Locus tag: PROVRUST_03840
|
||||
| PROVRUST_03840 | -148 | 5.1 | TTGATTCAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -244
Score: 4 Sequence: GTGATTTAGATCAC
Locus tag: PROVRUST_03857
|
||||
| PROVRUST_03857 | -244 | 4 | GTGATTTAGATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhE | ||||
| Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01318 | -238 | 4.1 | TTGATCTGGATCAC |
| Enterobacter sp. 638 | Ent638_2304 | -249 | 4.5 | TTGATTCAGATCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2326 | -311 | 3.6 | TCGATGTTGATCAC |
| -305 | 3.8 | TTGATCACAAAAAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b1241 | -237 | 4.3 | TTGATTTGGATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02199 | -233 | 4.7 | TTGATCTAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2496 | -134 | 4.5 | GTGATTAAGATCAA |
| Proteus mirabilis HI4320 | PMI1486 | -242 | 3.8 | GTGATGTAGATCAC |
| Salmonella typhimurium LT2 | STM1749 | -238 | 4.7 | TTGATTTAGATCAC |
| Serratia proteamaculans 568 | Spro_2704 | -274 | 4.4 | ATGATTTAAATCAC |