Propagation of Fnr regulog to Providencia rettgeri DSM 1131
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Providencia rettgeri DSM 1131 |
| Orthologous TF(s) | PROVRETT_01949 |
| Regulated genes | 88 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -101
Score: 4.5 Sequence: TTCATTTTTATCAA
Locus tag: PROVRETT_00003
|
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| PROVRETT_00003 | -101 | 4.5 | TTCATTTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -162 | 4.2 | TTTATTGTTATCAA |
| Enterobacter sp. 638 | Ent638_0218 | -111 | 4 | TTGATTTTAGAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04395 | -154 | 4.1 | TTCATTGTTATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -61 | 4 | |
| Proteus mirabilis HI4320 | PMI2764 | -64 | 4.2 | |
|
Position: -272
Score: 3.5 Sequence: ACGATATTAATAAA
Position: -257
Score: 3.6 Sequence: TTTATTATTATCGA
Position: -150
Score: 4.3 Sequence: TTGTCGTAAAACAA
Locus tag: PROVRETT_00018
|
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| PROVRETT_00018 | -272 | 3.5 | ACGATATTAATAAA | |
| -257 | 3.6 | TTTATTATTATCGA | ||
| -150 | 4.3 | TTGTCGTAAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ubiC | ||||
| Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40) | ||||
| Erwinia amylovora ATCC 49946 | EAM_0260 | -194 | 3.8 | CTGATATTAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4039 | -70 | 3.4 | TTGCTTTACATCTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4378 | -253 | 3.8 | TTATTTTTGGTCAA |
| Proteus mirabilis HI4320 | PMI2753 | -163 | 4.3 | TTGTTTTTTCTCAA |
| Serratia proteamaculans 568 | Spro_4464 | -223 | 3.6 | TTGCTGGAGATCAC |
| Yersinia pestis KIM | y0568 | -253 | 3.3 | CTGATATTTATAAT |
|
Position: -349
Score: 4.1 Sequence: TTTTTTTAGAACAA
Position: -88
Score: 3.6 Sequence: TTGATATGGCGCAA
Locus tag: PROVRETT_00537
|
||||
| PROVRETT_00537 | -349 | 4.1 | TTTTTTTAGAACAA | |
| -88 | 3.6 | TTGATATGGCGCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ynfE | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01582 | -32 | 4.3 | |
| Escherichia coli str. K-12 substr. MG1655 | b1588 | -113 | 4.1 | TTGATATGGATTAA |
| Salmonella typhimurium LT2 | STM1498 | -116 | 3.7 | TTGACATGGATTAA |
|
Position: -195
Score: 4.8 Sequence: TTGATCAAAAACAA
Locus tag: PROVRETT_00549
|
||||
| PROVRETT_00549 | -195 | 4.8 | TTGATCAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nrfA | ||||
| Ortholog function: Nitrite reductase, cytochrome c(552) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03814 | -146 | 4.7 | TTGATTAAAGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1875 | -135 | 4.8 | TTGATCAAAAACAA |
| Escherichia coli str. K-12 substr. MG1655 | b4070 | -141 | 4.7 | TTGATTAAAGACAA |
| Salmonella typhimurium LT2 | STM4277 | -143 | 4.7 | TTGATTAAAGACAA |
|
Position: -55
Score: 3.5 Sequence: ATGCGGTTTATCAA
Locus tag: PROVRETT_00551
|
||||
| PROVRETT_00551 | -55 | 3.5 | ATGCGGTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napF | ||||
| Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b2208 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2261 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -3
Score: 3.3 Sequence: TTTATGAAAGCCAA
Locus tag: PROVRETT_00553
|
||||
| PROVRETT_00553 | -3 | 3.3 | TTTATGAAAGCCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napA | ||||
| Ortholog function: Periplasmic nitrate reductase precursor (EC 1.7.99.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00569 | -35 | 3.4 | TTGCCCGACATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2206 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2259 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: 0
Score: 3.6 Sequence: ATGTCAAATAACAA
Locus tag: PROVRETT_00557
|
||||
| PROVRETT_00557 | 0 | 3.6 | ATGTCAAATAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: napC | ||||
| Ortholog function: Cytochrome c-type protein NapC | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00573 | -35 | 3.4 | TTGCCCGACATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2202 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Salmonella typhimurium LT2 | STM2255 | -90 | 3.3 | CTTATTTACAAAAA |
|
Position: -122
Score: 3.8 Sequence: TTGAGTATGATCAG
Position: -96
Score: 4.7 Sequence: TTGTGTTAAATCAA
Locus tag: PROVRETT_00558
|
||||
| PROVRETT_00558 | -122 | 3.8 | TTGAGTATGATCAG | |
| -96 | 4.7 | TTGTGTTAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmC | ||||
| Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00577 | -136 | 3.6 | TTGACTGGCGACAA |
| Edwardsiella tarda EIB202 | ETAE_2459 | -114 | 3.5 | TTATTGTATATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1884 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2199 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02079 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2252 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3817 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1569 | -302 | 4 | TGGATTTTTAACAA |
|
Position: 4
Score: 3.2 Sequence: TTGCTAAACATGAT
Locus tag: PROVRETT_00561
|
||||
| PROVRETT_00561 | 4 | 3.2 | TTGCTAAACATGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmE | ||||
| Ortholog function: Cytochrome c-type biogenesis protein CcmE, heme chaperone | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00579 | -136 | 3.6 | TTGACTGGCGACAA |
| Edwardsiella tarda EIB202 | ETAE_2457 | -114 | 3.5 | TTATTGTATATAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1886 | -106 | 4.4 | TTGATCTCAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2197 | -46 | 3.2 | TTGGTCGCTCTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02077 | -326 | 3.4 | GTGATACAAGTCAC |
| Salmonella typhimurium LT2 | STM2250 | -90 | 3.3 | CTTATTTACAAAAA |
| Salmonella typhimurium LT2 | STM3815 | -110 | 4.7 | TTGATACCAATCAA |
| Yersinia pestis KIM | y1571 | -302 | 4 | TGGATTTTTAACAA |
|
Position: -110
Score: 4.6 Sequence: TTAATATAGATCAA
Locus tag: PROVRETT_00600
|
||||
| PROVRETT_00600 | -110 | 4.6 | TTAATATAGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Edwardsiella tarda EIB202 | ETAE_2215 | -113 | 4.4 | TTGCGTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2662 | -114 | 4.4 | TTGCGCTAAATCAA |
| Proteus mirabilis HI4320 | PMI2112 | -131 | 4.4 | TTGCGTTAGATCAA |
| Serratia proteamaculans 568 | Spro_1666 | -66 | 4.4 | TTGCGCTAAATCAA |
| Yersinia pestis KIM | y2819 | -115 | 4.1 | TTGCGTCAAATCAA |
|
Position: -219
Score: 5.1 Sequence: TTGATATTTATCAA
Position: -167
Score: 5.1 Sequence: ATGATTTAAATCAA
Locus tag: PROVRETT_00765
|
||||
| PROVRETT_00765 | -219 | 5.1 | TTGATATTTATCAA | |
| -167 | 5.1 | ATGATTTAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -185
Score: 5 Sequence: TTGATTTAAATCAT
Position: -133
Score: 5.1 Sequence: TTGATAAATATCAA
Locus tag: PROVRETT_00766
|
||||
| PROVRETT_00766 | -185 | 5 | TTGATTTAAATCAT | |
| -133 | 5.1 | TTGATAAATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiD | ||||
| Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit | ||||
| Edwardsiella tarda EIB202 | ETAE_2732 | -27 | 4.3 | TTGCTCTATCTCAA |
| Proteus mirabilis HI4320 | PMI1898 | -180 | 5.2 | TTGATTTAAAACAA |
| -127 | 5.1 | TTGATATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_3682 | -189 | 4.2 | TTGACATAAAACAT |
| -136 | 4.9 | TTGACTTTAATCAA | ||
| Yersinia pestis KIM | y1282 | -180 | 4.6 | TTGATATAAAACAT |
| -127 | 5.1 | TTGATTTGAATCAA | ||
|
Position: 21
Score: 3.5 Sequence: CTGAATCACAACAA
Locus tag: PROVRETT_01463
|
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| PROVRETT_01463 | 21 | 3.5 | CTGAATCACAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phoU | ||||
| Ortholog function: Phosphate transport system regulatory protein PhoU | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00061 | -243 | 4.4 | CTGTTTTTAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3542 | -93 | 3.8 | TTTACTGTCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4473 | -52 | 3.6 | CTGATTGATAACGA |
| Escherichia coli str. K-12 substr. MG1655 | b3724 | -138 | 3.8 | CTTATTTAAATCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0218 | -33 | 3.9 | TTGTTGATTCTCAA |
| Proteus mirabilis HI4320 | PMI2897 | -46 | 4 | TTGATAGATGTCGA |
|
Position: -178
Score: 4.9 Sequence: TTGATCCATATCAA
Locus tag: PROVRETT_01472
|
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| PROVRETT_01472 | -178 | 4.9 | TTGATCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04830 | -204 | 4.1 | TTGAGCCATGTCAA |
| Enterobacter sp. 638 | Ent638_3821 | -133 | 4.2 | TTGAGCAAGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3408 | -203 | 4.4 | TTGAGCCACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03778 | -198 | 3.8 | TTGCGGCATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0209 | -206 | 3.5 | TGGATGCAAATCAT |
| Proteus mirabilis HI4320 | PMI2920 | -190 | 5.2 | TTGATGTACATCAA |
| Salmonella typhimurium LT2 | STM3505 | -204 | 4.4 | TTGAGCCATATCAA |
| Serratia proteamaculans 568 | Spro_4628 | -284 | 3.8 | CTGATTTAACTCAC |
| Yersinia pestis KIM | y3912 | -93 | 4 | ATTATTTAAATCAT |
|
Position: -83
Score: 3.9 Sequence: TAGTTAAAAATCAA
Locus tag: PROVRETT_01556
|
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| PROVRETT_01556 | -83 | 3.9 | TAGTTAAAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: norV | ||||
| Ortholog function: Anaerobic nitric oxide reductase flavorubredoxin | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04064 | -90 | 4.2 | TTATTTAAAATCAA |
| Enterobacter sp. 638 | Ent638_3182 | -147 | 4.1 | TTGACAGTAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03045 | -53 | 3.7 | TTGATATAAGCCAG |
| Salmonella typhimurium LT2 | STM2840 | -89 | 3.7 | TCAATACAAATCAA |
|
Position: -139
Score: 3.8 Sequence: ATGCTAAATGTCAA
Position: 12
Score: 4 Sequence: ATGATTTTCATTAA
Locus tag: PROVRETT_01616
|
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| PROVRETT_01616 | -139 | 3.8 | ATGCTAAATGTCAA | |
| 12 | 4 | ATGATTTTCATTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sodA | ||||
| Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1) | ||||
| Enterobacter sp. 638 | Ent638_4063 | -132 | 3.6 | ATGATACAAAAAAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0092 | -143 | 3.5 | ATGAAGTAAAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04217 | -146 | 4.2 | TTGTTCTACATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0075 | -346 | 3.6 | TTATGTCAAATCAA |
| Proteus mirabilis HI4320 | PMI3036 | -164 | 3.8 | TTTATTTAAAATAA |
| -85 | 4 | ATGATTTTCATTAA | ||
|
Position: -156
Score: 3.7 Sequence: TTGATGGAAAGCAG
Locus tag: PROVRETT_01754
|
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| PROVRETT_01754 | -156 | 3.7 | TTGATGGAAAGCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -103
Score: 3.8 Sequence: TTCTTTTATATCGA
Position: -41
Score: 3.7 Sequence: TCGATAAATATTAA
Locus tag: PROVRETT_01764
|
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| PROVRETT_01764 | -103 | 3.8 | TTCTTTTATATCGA | |
| -41 | 3.7 | TCGATAAATATTAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ssuE | ||||
| Ortholog function: FMN reductase (EC 1.5.1.29) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02124 | -43 | 3.7 | TTAATGAAAATCGA |
| Enterobacter sp. 638 | Ent638_1456 | -181 | 3.5 | TTGACCTGAGGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0937 | -278 | 3.6 | GCCATTTAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00973 | -182 | 3.8 | TTGACCTGCGACAA |
| Serratia proteamaculans 568 | Spro_1739 | -256 | 4.6 | TTGATTAAAAGCAA |
| Yersinia pestis KIM | y0246 | -252 | 3.7 | GTGATCTGGCTCAA |
|
Position: -48
Score: 3.9 Sequence: TTTAATTTTATCAA
Locus tag: PROVRETT_01833
|
||||
| PROVRETT_01833 | -48 | 3.9 | TTTAATTTTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpE | ||||
| Ortholog function: ATP synthase C chain (EC 3.6.3.14) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00077 | -122 | 4.2 | TTGTTTGAAATCAC |
| Enterobacter sp. 638 | Ent638_4127 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3479 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4517 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3737 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04142 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0045 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3059 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3870 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: 37
Score: 3.6 Sequence: GTGCTGAAAAACAA
Locus tag: PROVRETT_01839
|
||||
| PROVRETT_01839 | 37 | 3.6 | GTGCTGAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: atpC | ||||
| Ortholog function: ATP synthase epsilon chain (EC 3.6.3.14) | ||||
| Enterobacter sp. 638 | Ent638_4133 | -292 | 3.7 | TTGATTAATATGAC |
| Erwinia amylovora ATCC 49946 | EAM_3473 | -124 | 3.9 | TCGATTGAAATCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4511 | -191 | 3.7 | ATGATTGTTAGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3731 | -123 | 4.2 | TTGTTTGAAATCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04136 | -122 | 4.2 | TTGTTTGAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0039 | -225 | 3.9 | ATTATTAAAAACAA |
| Proteus mirabilis HI4320 | PMI3065 | -130 | 4 | |
| Salmonella typhimurium LT2 | STM3864 | -122 | 4.2 | TTGTTTGAAATCAC |
|
Position: -332
Score: 3.8 Sequence: TTGATATTCCTAAA
Position: -311
Score: 3.9 Sequence: TTGTGTTAAATTAA
Position: -238
Score: 4.1 Sequence: ATGATGTAAGTCAT
Position: -199
Score: 4.6 Sequence: TTAATCTATATCAA
Position: -41
Score: 4.6 Sequence: TTGACTCATATCAA
Locus tag: PROVRETT_01949
|
||||
| PROVRETT_01949 | -332 | 3.8 | TTGATATTCCTAAA | |
| -311 | 3.9 | TTGTGTTAAATTAA | ||
| -238 | 4.1 | ATGATGTAAGTCAT | ||
| -199 | 4.6 | TTAATCTATATCAA | ||
| -41 | 4.6 | TTGACTCATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -146
Score: 5.5 Sequence: TTGATTTAAATCAA
Locus tag: PROVRETT_02150
|
||||
| PROVRETT_02150 | -146 | 5.5 | TTGATTTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: -190
Score: 4.9 Sequence: TTTATTTAAATCAA
Position: -100
Score: 4.7 Sequence: TTGACCAAAATCAA
Locus tag: PROVRETT_02357
|
||||
| PROVRETT_02357 | -190 | 4.9 | TTTATTTAAATCAA | |
| -100 | 4.7 | TTGACCAAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -257
Score: 4.8 Sequence: TTGATTTTGGTCAA
Position: -167
Score: 4.9 Sequence: TTGATTTAAATAAA
Locus tag: PROVRETT_02358
|
||||
| PROVRETT_02358 | -257 | 4.8 | TTGATTTTGGTCAA | |
| -167 | 4.9 | TTGATTTAAATAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -221
Score: 3.9 Sequence: TTGATTTATTTCTA
Locus tag: PROVRETT_02414
|
||||
| PROVRETT_02414 | -221 | 3.9 | TTGATTTATTTCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icdA | ||||
| Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42) | ||||
| Edwardsiella tarda EIB202 | ETAE_2050 | -73 | 3.9 | TTTTATTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2439 | -158 | 3.7 | GTGATTTTTAACAG |
| Escherichia coli str. K-12 substr. MG1655 | b1136 | -89 | 3.6 | TTGCTCTAAAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2801 | -249 | 4.8 | TTGTTAAATATCAA |
| Serratia proteamaculans 568 | Spro_2025 | -3 | 4.3 | TTGATGGAAAGCAA |
| Yersinia pestis KIM | y1802 | -106 | 3.7 | GTGATTTTTAACAG |
|
Position: -318
Score: 3.4 Sequence: TTCATATATAGCAT
Position: -263
Score: 3.4 Sequence: ATGATATTTAACCA
Position: -106
Score: 3.2 Sequence: TTTATCATAAAAAA
Position: -71
Score: 4 Sequence: CTGATTTGAGACAA
Locus tag: PROVRETT_02427
|
||||
| PROVRETT_02427 | -318 | 3.4 | TTCATATATAGCAT | |
| -263 | 3.4 | ATGATATTTAACCA | ||
| -106 | 3.2 | TTTATCATAAAAAA | ||
| -71 | 4 | CTGATTTGAGACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pepT | ||||
| Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01926 | -42 | 3.3 | TTGCTTATTAATAA |
| Escherichia coli str. K-12 substr. MG1655 | b1127 | -121 | 3.7 | TTTATATTCATTAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01133 | -347 | 3.5 | TTGTTGATGGTCAG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2810 | -156 | 3.8 | TTGATGAAAAGCAT |
| Proteus mirabilis HI4320 | PMI0882 | -92 | 3.7 | TTGATTTAATTAAT |
| Salmonella typhimurium LT2 | STM1227 | -375 | 4.1 | TTGTTAATGGTCAA |
| Serratia proteamaculans 568 | Spro_2009 | -96 | 3.6 | ATGATTTCCGTTAA |
| Yersinia pestis KIM | y1791 | -23 | 4 | TTGATCATGATCAC |
|
Position: -146
Score: 4.9 Sequence: TTGATGTGAATCAA
Locus tag: PROVRETT_02438
|
||||
| PROVRETT_02438 | -146 | 4.9 | TTGATGTGAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -185
Score: 5.2 Sequence: TTGATTTTTATCAA
Position: -73
Score: 4 Sequence: TTATCATAAATCAA
Locus tag: PROVRETT_02553
|
||||
| PROVRETT_02553 | -185 | 5.2 | TTGATTTTTATCAA | |
| -73 | 4 | TTATCATAAATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: -121
Score: 4.2 Sequence: ATGATATCAATCAT
Locus tag: PROVRETT_02638
|
||||
| PROVRETT_02638 | -121 | 4.2 | ATGATATCAATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -26
Score: 3.8 Sequence: TTGAGGTCAAGCAA
Locus tag: PROVRETT_02842
|
||||
| PROVRETT_02842 | -26 | 3.8 | TTGAGGTCAAGCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: soxR | ||||
| Ortholog function: redox-sensitive transcriptional activator (MerR-family transcriptional regulator) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03827 | -17 | 3.4 | TTGAGGTAAAGCGA |
| Escherichia coli str. K-12 substr. MG1655 | b4063 | -17 | 3.4 | TTGAGGTAAAGCGA |
| Proteus mirabilis HI4320 | PMI2705 | -69 | 3.4 | TTGTATTGGGACAA |
| 16 | 3.7 | TAGATTTTAATCGA | ||
| Salmonella typhimurium LT2 | STM4266 | -17 | 3.4 | TTGAGGTAAAGCGA |
|
Position: -166
Score: 3.8 Sequence: TTGTTTTTTGTCAC
Locus tag: PROVRETT_03008
|
||||
| PROVRETT_03008 | -166 | 3.8 | TTGTTTTTTGTCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ybhK | ||||
| Ortholog function: Predicted transferase, NAD(P)-binding | ||||
| Edwardsiella tarda EIB202 | ETAE_2348 | -92 | 3.9 | TTGATACATGTCAC |
| Enterobacter sp. 638 | Ent638_1272 | -90 | 4.5 | TTGATATACGTCAT |
| Erwinia amylovora ATCC 49946 | EAM_1217 | -88 | 4 | TTGATATATAGCGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2818 | -117 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0780 | -147 | 4.8 | TTGATATACATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00809 | -91 | 4 | TTGATGTCGGTCAG |
| Salmonella typhimurium LT2 | STM0801 | -146 | 4.8 | TTGATATATATCAT |
| Yersinia pestis KIM | y3024 | -190 | 4.2 | TTGTTTAAAATCAC |
|
Position: -320
Score: 3.5 Sequence: TTGATAAGCGTTAA
Position: -255
Score: 4.4 Sequence: TAGATCTATATCAA
Position: -219
Score: 3.5 Sequence: GAGATGTTAATCAA
Position: -185
Score: 3.5 Sequence: TTGAAACCACTCAA
Position: -101
Score: 3.6 Sequence: ATAATATATATCGA
Locus tag: PROVRETT_03009
|
||||
| PROVRETT_03009 | -320 | 3.5 | TTGATAAGCGTTAA | |
| -255 | 4.4 | TAGATCTATATCAA | ||
| -219 | 3.5 | GAGATGTTAATCAA | ||
| -185 | 3.5 | TTGAAACCACTCAA | ||
| -101 | 3.6 | ATAATATATATCGA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02345 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2347 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1273 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1218 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2817 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0781 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00810 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1499 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0802 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1320 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3023 | -310 | 4.3 | GTGATTTTAAACAA |
|
Position: 9
Score: 3.5 Sequence: CTGACTCACCTCAA
Locus tag: PROVRETT_03010
|
||||
| PROVRETT_03010 | 9 | 3.5 | CTGACTCACCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaC | ||||
| Ortholog function: Molybdenum cofactor biosynthesis protein MoaC | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02343 | -253 | 4.7 | CTGATGTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2346 | -380 | 3.9 | GTGACATGTATCAA |
| Enterobacter sp. 638 | Ent638_1275 | -236 | 4.4 | ATGACGTATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1220 | -212 | 4.2 | TCGCTATATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2815 | -321 | 3.5 | ATGACCTGAGACAA |
| Escherichia coli str. K-12 substr. MG1655 | b0783 | -263 | 4.9 | ATGATGTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00812 | -257 | 4 | CTGACCGACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1500 | -155 | 3.7 | TCGTTTTACATTAA |
| Salmonella typhimurium LT2 | STM0804 | -264 | 5 | ATGATATATATCAA |
| Serratia proteamaculans 568 | Spro_1322 | -312 | 3.7 | GTGATTCCGGTCAA |
| Yersinia pestis KIM | y3021 | -222 | 3.7 | GTGATGATCAACAA |
|
Position: 24
Score: 3.3 Sequence: TTGATTTCTCTAGA
Locus tag: PROVRETT_03032
|
||||
| PROVRETT_03032 | 24 | 3.3 | TTGATTTCTCTAGA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -27
Score: 3.3 Sequence: TTGGTCCTAATCAG
Locus tag: PROVRETT_03064
|
||||
| PROVRETT_03064 | -27 | 3.3 | TTGGTCCTAATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gnd | ||||
| Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00756 | -337 | 4 | TTGATTACTATCTA |
| Enterobacter sp. 638 | Ent638_2642 | -112 | 3.7 | GTGACATAGATCAG |
| Erwinia amylovora ATCC 49946 | EAM_2150 | -264 | 3.8 | TTCTCTTAAGTCAA |
| -169 | 4 | TTTTTTTTAAACAA | ||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1444 | -228 | 3.3 | TTGAGTGGTAACAT |
| Escherichia coli str. K-12 substr. MG1655 | b2029 | -375 | 3.4 | ATGGCTTCGATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02499 | -322 | 3.7 | TTTTTATAGTTCAA |
| Proteus mirabilis HI4320 | PMI0655 | -7 | 3.7 | TTATTTCATGTCAA |
| Serratia proteamaculans 568 | Spro_1608 | -384 | 3.3 | ATTATTTGAATTAA |
|
Position: -85
Score: 4.5 Sequence: ATGATCCATATCAA
Locus tag: PROVRETT_03134
|
||||
| PROVRETT_03134 | -85 | 4.5 | ATGATCCATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -178
Score: 5 Sequence: TTGATCCAAATCAA
Position: -129
Score: 3.8 Sequence: TTGATGTTTAACTA
Position: -77
Score: 4.2 Sequence: TTGATTTTAGGCAA
Locus tag: PROVRETT_03317
|
||||
| PROVRETT_03317 | -178 | 5 | TTGATCCAAATCAA | |
| -129 | 3.8 | TTGATGTTTAACTA | ||
| -77 | 4.2 | TTGATTTTAGGCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing | ||||
| Enterobacter sp. 638 | Ent638_2055 | -77 | 3.9 | TTGATTTGACGCAA |
| Enterobacter sp. 638 | Ent638_2054 | -77 | 3.9 | TTGATTTGACGCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1474 | -133 | 4.4 | TTGAGGTAGGTCAA |
| Salmonella typhimurium LT2 | STM1570 | -126 | 3.9 | TTGATTTGACGCAA |
|
Position: -321
Score: 3.5 Sequence: TTTTGTTAACTCAA
Position: -167
Score: 3.7 Sequence: TTGAGAAACATGAA
Position: -158
Score: 3.9 Sequence: ATGAAATAGGTCAA
Locus tag: PROVRETT_03481
|
||||
| PROVRETT_03481 | -321 | 3.5 | TTTTGTTAACTCAA | |
| -167 | 3.7 | TTGAGAAACATGAA | ||
| -158 | 3.9 | ATGAAATAGGTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citC | ||||
| Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02541 | -184 | 4.1 | GTGAAATAAATCAA |
| Enterobacter sp. 638 | Ent638_3375 | 19 | 4.1 | TTTATAAAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2574 | -93 | 3.8 | TTGAGCCAAATAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00034 | -125 | 3.6 | TTAATTAACAACAT |
| Salmonella typhimurium LT2 | STM0058 | -227 | 4.2 | TTGATGGGTAACAA |
|
Position: 10
Score: 4 Sequence: TTGTGAAAAAACAA
Locus tag: PROVRETT_03534
|
||||
| PROVRETT_03534 | 10 | 4 | TTGTGAAAAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -320
Score: 4.9 Sequence: TTGACGTAAATCAA
Locus tag: PROVRETT_03543
|
||||
| PROVRETT_03543 | -320 | 4.9 | TTGACGTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-) | ||||
| Proteus mirabilis HI4320 | PMI0573 | -312 | 4.5 | TTGATGTGGGTCAA |
| Yersinia pestis KIM | y3063 | -314 | 5.1 | TTGTTCTAAATCAA |
| -263 | 4.4 | TTGTCGTAGATCAA | ||
|
Position: 0
Score: 4.1 Sequence: ATGATTAAAATTAA
Locus tag: PROVRETT_03664
|
||||
| PROVRETT_03664 | 0 | 4.1 | ATGATTAAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA | ||||
| Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-) | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00239 | 0 | 4.2 | ATGATTAAAATCAC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1196 | -205 | 4.1 | TTGAACTAAATCAC |
| Proteus mirabilis HI4320 | PMI0352 | -205 | 4.2 | TTGAGCTAAATCAC |
| Serratia proteamaculans 568 | Spro_0953 | 0 | 4.3 | ATGATTAAAATCAG |
| Yersinia pestis KIM | y0951 | 18 | 4.2 | ATGATTAAAATAAA |
|
Position: -75
Score: 4.3 Sequence: TTGAGGTGTATCAA
Locus tag: PROVRETT_03750
|
||||
| PROVRETT_03750 | -75 | 4.3 | TTGAGGTGTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hypB | ||||
| Ortholog function: [NiFe] hydrogenase nickel incorporation-associated protein HypB | ||||
| Salmonella typhimurium LT2 | STM2855 | -88 | 3.7 | TTGATGAAACTGAA |
|
Position: -141
Score: 3.8 Sequence: TTTATGTTTATCAT
Locus tag: PROVRETT_03983
|
||||
| PROVRETT_03983 | -141 | 3.8 | TTTATGTTTATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuA | ||||
| Ortholog function: Anaerobic C4-dicarboxylate transporter | ||||
| Proteus mirabilis HI4320 | PMI2547 | -26 | 3.7 | TTTAATTATCTCAA |
| Proteus mirabilis HI4320 | PMI2547 | -202 | 3.7 | ATGAGATAGATCAC |
|
Position: -186
Score: 3.6 Sequence: ATGATTAAAAGCAT
Position: -3
Score: 3.5 Sequence: CTCATGTCAAACAA
Locus tag: PROVRETT_03984
|
||||
| PROVRETT_03984 | -186 | 3.6 | ATGATTAAAAGCAT | |
| -3 | 3.5 | CTCATGTCAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aspA | ||||
| Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_0311 | 19 | 3.5 | TTGAAGAAGATCTA |
| Enterobacter sp. 638 | Ent638_0326 | -184 | 3.6 | TTAATAATTATCAT |
| Erwinia amylovora ATCC 49946 | EAM_0416 | -194 | 4 | TTGATATAACACGA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0621 | -288 | 4 | TTGTTCTAAAATAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04529 | 0 | 3.5 | ATGTTAAACAACAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4137 | -362 | 4.2 | TTGATTTGGATGAA |
| -198 | 3.8 | ATCACATATATCAA | ||
| Proteus mirabilis HI4320 | PMI2546 | -202 | 3.7 | ATGAGATAGATCAC |
|
Position: -286
Score: 3.9 Sequence: TCGTTAAAAAACAA
Position: -113
Score: 4.3 Sequence: TTGTTCCTTATCAA
Locus tag: PROVRETT_04010
|
||||
| PROVRETT_04010 | -286 | 3.9 | TCGTTAAAAAACAA | |
| -113 | 4.3 | TTGTTCCTTATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -110
Score: 4.4 Sequence: ATGATAAAAAACAA
Position: -83
Score: 3.9 Sequence: TTGTGTTAGATAAA
Position: -45
Score: 3.7 Sequence: TTAATCAAAATCAC
Locus tag: PROVRETT_04107
|
||||
| PROVRETT_04107 | -110 | 4.4 | ATGATAAAAAACAA | |
| -83 | 3.9 | TTGTGTTAGATAAA | ||
| -45 | 3.7 | TTAATCAAAATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: gltD | ||||
| Ortholog function: Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3213 | -156 | 3.9 | TTGACCTGTATCAG |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03625 | -114 | 3.9 | ATGTTGTACGACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4010 | -362 | 4.1 | GTGATATAAATCAC |
| -334 | 4.1 | CTGATCTATATCAC | ||
| Proteus mirabilis HI4320 | PMI3676 | -353 | 3.7 | TTATCTAACATCAA |
| -252 | 4.1 | TTTTTATTTATCAA | ||
| Serratia proteamaculans 568 | Spro_4345 | -330 | 3.6 | ATATTAAATATCAA |
| Yersinia pestis KIM | y0129 | -72 | 3.8 | CTGTCTGATATCAA |
|
Position: -218
Score: 3.6 Sequence: TTAATTTAATTCAT
Position: -114
Score: 3.8 Sequence: TTGATCGTGCACAA
Locus tag: PROVRETT_04222
|
||||
| PROVRETT_04222 | -218 | 3.6 | TTAATTTAATTCAT | |
| -114 | 3.8 | TTGATCGTGCACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dmsA | ||||
| Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02177 | -117 | 3.6 | CTGATTTTTCTCAT |
| Enterobacter sp. 638 | Ent638_1418 | -3 | 3.8 | TCTATGAAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b0894 | -184 | 4.3 | TTGATACCGAACAA |
| Salmonella typhimurium LT2 | STM0964 | -96 | 4.2 | |
| Yersinia pestis KIM | y0864 | -199 | 4.2 | TTGATTCCAGACAA |
|
Position: -115
Score: 5.2 Sequence: TTGATAAAAATCAA
Locus tag: PROVRETT_04232
|
||||
| PROVRETT_04232 | -115 | 5.2 | TTGATAAAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yhjA | ||||
| Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04957 | -73 | 4.7 | TTGATACTTATCAA |
| Edwardsiella tarda EIB202 | ETAE_1715 | -117 | 4.3 | TTGACACTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3518 | -121 | 4.7 | TTGATTCCTATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Salmonella typhimurium LT2 | STM3820 | -110 | 4.7 | TTGATACCAATCAA |
| Serratia proteamaculans 568 | Spro_1968 | -89 | 4.6 | TTGATTATCGTCAA |
| Yersinia pestis KIM | y0848 | -152 | 4.7 | TTGATAAAGGTCAA |
|
Position: -276
Score: 4.9 Sequence: CTGATCTAAATCAA
Position: -185
Score: 4.6 Sequence: TTGAATTAAAACAA
Locus tag: PROVRETT_04255
|
||||
| PROVRETT_04255 | -276 | 4.9 | CTGATCTAAATCAA | |
| -185 | 4.6 | TTGAATTAAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Enterobacter sp. 638 | Ent638_2317 | -251 | 5.5 | TTGATATAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -268 | 4.9 | TTGATGCAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -279 | 5.4 | TTGATGTAAATCAA |
| -241 | 4.6 | TTGATATTTATCAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02216 | -251 | 5.5 | TTGATATAAATCAA |
| Proteus mirabilis HI4320 | PMI3569 | -235 | 4.5 | ATGATCTGCATCAA |
| Salmonella typhimurium LT2 | STM1766 | -281 | 5.5 | TTGATATAAATCAA |
| Serratia proteamaculans 568 | Spro_2899 | -301 | 5.4 | TTGATGTAAATCAA |
|
Position: -165
Score: 4.5 Sequence: TTGTTTTAATTCAA
Position: -74
Score: 4.9 Sequence: TTGATTTAGATCAG
Locus tag: PROVRETT_04256
|
||||
| PROVRETT_04256 | -165 | 4.5 | TTGTTTTAATTCAA | |
| -74 | 4.9 | TTGATTTAGATCAG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Proteus mirabilis HI4320 | PMI3570 | -73 | 4.3 | |
| Serratia proteamaculans 568 | Spro_2898 | -75 | 5.4 | |
|
Position: 26
Score: 4.5 Sequence: TTTATTGATATCAA
Locus tag: PROVRETT_04471
|
||||
| PROVRETT_04471 | 26 | 4.5 | TTTATTGATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: amtB | ||||
| Ortholog function: Ammonium transporter | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00414 | -59 | 4 | |
| Proteus mirabilis HI4320 | PMI0127 | 0 | 3.8 | ATGAAATATATCAT |
|
Position: 0
Score: 3.7 Sequence: ATGAAATATATCAT
Locus tag: PROVRETT_04472
|
||||
| PROVRETT_04472 | 0 | 3.7 | ATGAAATATATCAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glnK | ||||
| Ortholog function: Nitrogen assimilation regulatory protein | ||||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00413 | -59 | 4 | |
| Proteus mirabilis HI4320 | PMI0126 | 0 | 3.8 | ATGAAATATATCAT |
|
Position: -283
Score: 3.8 Sequence: ATCATTTATATCAG
Position: -200
Score: 3.8 Sequence: TAGAGTTTTATCAA
Locus tag: PROVRETT_04491
|
||||
| PROVRETT_04491 | -283 | 3.8 | ATCATTTATATCAG | |
| -200 | 3.8 | TAGAGTTTTATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyoA | ||||
| Ortholog function: Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3875 | -336 | 3.8 | TTGTGAGCTATCAA |
| Proteus mirabilis HI4320 | PMI0108 | 9 | 3.6 | ATGAAATACATAAA |
| Serratia proteamaculans 568 | Spro_1090 | -293 | 3.6 | TTCTTTTACATTAA |
| Yersinia pestis KIM | y1021 | -223 | 3.5 | TTGTTTTTCCTTAA |
|
Position: -31
Score: 4 Sequence: TCGATTTTAATAAA
Locus tag: PROVRETT_04508
|
||||
| PROVRETT_04508 | -31 | 4 | TCGATTTTAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: caiF | ||||
| Ortholog function: Transcriptional activatory protein CaiF | ||||
| Edwardsiella tarda EIB202 | ETAE_2672 | -358 | 3.6 | ATGATCACCATCAC |
| Escherichia coli str. K-12 substr. MG1655 | b0034 | -53 | 3.7 | TTGCTTCAAAACGA |
| Proteus mirabilis HI4320 | PMI2660 | -313 | 4 | TTGTTGTTTATAAA |
|
Position: -270
Score: 4.9 Sequence: TTGATATGTATCAA
Locus tag: PROVRETT_04598
|
||||
| PROVRETT_04598 | -270 | 4.9 | TTGATATGTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -309
Score: 4.9 Sequence: CTGATCTAAATCAA
Locus tag: PROVRETT_04660
|
||||
| PROVRETT_04660 | -309 | 4.9 | CTGATCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narX | ||||
| Ortholog function: Nitrate/nitrite sensor protein NarX (EC 2.7.3.-) | ||||
| Enterobacter sp. 638 | Ent638_2317 | -251 | 5.5 | TTGATATAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2029 | -268 | 4.9 | TTGATGCAAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1222 | -279 | 5.4 | TTGATGTAAATCAA |
| -241 | 4.6 | TTGATATTTATCAT | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02216 | -251 | 5.5 | TTGATATAAATCAA |
| Proteus mirabilis HI4320 | PMI3569 | -235 | 4.5 | ATGATCTGCATCAA |
| Salmonella typhimurium LT2 | STM1766 | -281 | 5.5 | TTGATATAAATCAA |
| Serratia proteamaculans 568 | Spro_2899 | -301 | 5.4 | TTGATGTAAATCAA |