Propagation of KdgR regulog to Pectobacterium wasabiae WPP163
Source regulog: | KdgR - Enterobacteriales |
Regulator type: | Transcription factor |
Regulator family: | IclR |
Regulation mode: | repressor (activator) |
Biological process: | Pectin and polygalacturonate utlization |
Effector: | 2-keto-3-deoxygluconate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Pectobacterium wasabiae WPP163 |
Orthologous TF(s) | Pecwa_2177 |
Regulated genes | 32 |

Locus tag | Position | Score | Sequence | |
---|---|---|---|---|
Position: -124
Score: 5 Sequence: AAATAAAACATCGTTTCAAGG
Locus tag: Pecwa_0082
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Pecwa_0082 | -124 | 5 | AAATAAAACATCGTTTCAAGG | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgK | ||||
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) | ||||
Yersinia pestis KIM | y3838 | -225 | 5.1 | ATTTAAAACACCGTTTTAATC |
Serratia proteamaculans 568 | Spro_4750 | -105 | 6.2 | AAATAAAACGTTGTTTTATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4360 | -125 | 5.4 | AAATAAAACATCGTTTCAAGA |
Edwardsiella tarda EIB202 | ETAE_3377 | -91 | 5.4 | AAACAGAACGTTGTTTTATTT |
Position: -236
Score: 5.1 Sequence: CTATAAAACAGCATTTCATAT
Locus tag: Pecwa_0387
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Pecwa_0387 | -236 | 5.1 | CTATAAAACAGCATTTCATAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: rhiA | ||||
Ortholog function: predicted rhamnogalacturonide TRAP transporter, substrate-binding subunit | ||||
Citrobacter koseri ATCC BAA-895 | CKO_04899 | -138 | 5.1 | TTTTAAACCATCGTTTCAATT |
-50 | 4.8 | AACTAAAACAATGTTTTAACG | ||
Enterobacter sp. 638 | Ent638_3876 | -134 | 4.5 | TTTCAAACCATCGTTTCAAAA |
-49 | 4.8 | AACTAAAACAACGTTTTAACG | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0357 | -239 | 5.6 | ATATAAAACAGCATTTCATAT |
Position: -41
Score: 5.1 Sequence: TTGTAAAACAGGGTTTCATTT
Locus tag: Pecwa_0421
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Pecwa_0421 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjgK | ||||
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
Position: -70
Score: 6.2 Sequence: AAATAAAACGGCGTTTCATTT
Locus tag: Pecwa_0749
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Pecwa_0749 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ygjV | ||||
Ortholog function: putative transport protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b3090 | -64 | 5.4 | ATAAAAAACGGCGTTTCATAA |
Yersinia pestis KIM | y3597 | -133 | 5.2 | ATATGAAACGGTGTTCTGTTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0648 | -70 | 6.2 | AAATAAAACGGCGTTTCATTT |
Position: -38
Score: 5.5 Sequence: AACTGAAATATTGTTTCATAT
Locus tag: Pecwa_0926
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Pecwa_0926 | -38 | 5.5 | AACTGAAATATTGTTTCATAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: togT | ||||
Ortholog function: Oligogalacturonide transporter | ||||
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02398 | -46 | 5.2 | TATAAAAACAGTGTTTCAAAA |
Yersinia pestis KIM | y2961 | -47 | 4.5 | AAAGAAAACAGTTATTCATTA |
-25 | 6.1 | AAATGAAACATTGTTTTAATT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0817 | -60 | 4.5 | TAAAGAAATGATAGTTCAATC |
-38 | 5.5 | AACTGAAATATTGTTTCATAT | ||
Position: -88
Score: 5 Sequence: TAATGAAACAAGATTTCGGTT
Locus tag: Pecwa_1922
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Pecwa_1922 | -88 | 5 | TAATGAAACAAGATTTCGGTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: sotA | ||||
Ortholog function: sugar efflux transporter | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2730 | -88 | 5 | TAATGAAACAAGATTTCTGTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2730 | -88 | 5 | TAATGAAACAAGATTTCTGTT |
Position: -179
Score: 5.8 Sequence: AAATGAAACATTGTTTCTATA
Locus tag: Pecwa_2176
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Pecwa_2176 | -179 | 5.8 | AAATGAAACATTGTTTCTATA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ogl | ||||
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6) | ||||
Enterobacter sp. 638 | Ent638_3293 | -226 | 5.1 | AATTAAAACGCCGTTTTACAA |
Yersinia pestis KIM | y1875 | -96 | 5.8 | AAATGAAACATTGTTTCTATA |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2426 | -180 | 5.8 | AAATGAAACATTGTTTCTATA |
Position: -145
Score: 4.8 Sequence: ATTTGAAACCCTATTTTACTT
Locus tag: Pecwa_2196
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Pecwa_2196 | -145 | 4.8 | ATTTGAAACCCTATTTTACTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgM | ||||
Ortholog function: Oligogalacturonate-specific porin protein KdgM | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2407 | -153 | 4.8 | ATTTGAAACCCTATTTTACTT |
Position: -60
Score: 5.3 Sequence: AATCAAAACAGTGTTTCTATT
Locus tag: Pecwa_2201
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Pecwa_2201 | -60 | 5.3 | AATCAAAACAGTGTTTCTATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pelW | ||||
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9) | ||||
Yersinia pestis KIM | y1885 | -152 | 4.5 | AATCAAAACAACGTTCCGACT |
-76 | 5.2 | GATTGAAACGATGTTTCTATT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2402 | -139 | 4.5 | AATCAAAACAACGTTCCGACT |
-61 | 5.3 | AATCAAAACAGTGTTTCTATT | ||
Position: -209
Score: 6.1 Sequence: AAATAAAACATTATTTCATTT
Locus tag: Pecwa_2203
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Pecwa_2203 | -209 | 6.1 | AAATAAAACATTATTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kduI | ||||
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
-63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
-58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
-51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
-60 | 5 | AATCGGAACATTGTTTCGTTA | ||
Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
Position: -178
Score: 6.1 Sequence: AAATGAAATAATGTTTTATTT
Locus tag: Pecwa_2204
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Pecwa_2204 | -178 | 6.1 | AAATGAAATAATGTTTTATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgF | ||||
Ortholog function: Pectin degradation protein KdgF | ||||
Citrobacter koseri ATCC BAA-895 | CKO_04218 | -38 | 5.6 | AGTTGAAACATTGTTTCAATA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03255 | -39 | 5.8 | AAATGAAACAATGTTTCACTT |
Enterobacter sp. 638 | Ent638_3287 | -38 | 5.5 | AATTAAAACAATGTTTCACTA |
Yersinia pestis KIM | y1888 | -155 | 6 | AAATGAAATGATGTTTTATTA |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2399 | -174 | 6.1 | AAATGAAATAATGTTTTATTT |
Position: -209
Score: 6 Sequence: AAATGAAACAGCGTTTCTTTT
Locus tag: Pecwa_2509
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Pecwa_2509 | -209 | 6 | AAATGAAACAGCGTTTCTTTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ECA2137 | ||||
Ortholog function: putative exported protein | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2137 | -349 | 5.2 | AAATGAAACAATGCTTCCTTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2136 | -349 | 5.2 | AAATGAAACAATGCTTCCTTT |
Position: -197
Score: 5.6 Sequence: ATACGAAACGTCGTTTCAATT
Locus tag: Pecwa_2744
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Pecwa_2744 | -197 | 5.6 | ATACGAAACGTCGTTTCAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pykF | ||||
Ortholog function: Pyruvate kinase (EC 2.7.1.40) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1676 | -286 | 5 | TTTTGAAACGCTGTTTTTGTT |
Salmonella typhimurium LT2 | STM1378 | -286 | 4.7 | TTTTGAAACAGGGTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01709 | -286 | 5 | TTTTGAAACGCTGTTTTCATT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02133 | -285 | 5 | ATTTGAAACGAGGTTTTTATT |
Enterobacter sp. 638 | Ent638_1768 | -286 | 5.1 | TTTTGAAACGCCGTTTCCATT |
Serratia proteamaculans 568 | Spro_2187 | -203 | 4.1 | AAtaacAACAcatTTTCATcT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1867 | -259 | 5.1 | ATACGGAACGTCGTTTCAATT |
Position: -227
Score: 5.7 Sequence: TATTAAAACACTATTTCATTA
Locus tag: Pecwa_2758
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Pecwa_2758 | -227 | 5.7 | TATTAAAACACTATTTCATTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsA | ||||
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2) | ||||
Escherichia coli str. K-12 substr. MG1655 | b1702 | -222 | 5.3 | TATGAAAACAGCATTTCATTT |
Salmonella typhimurium LT2 | STM1349 | -226 | 4.9 | AATGAAAAGTGTGTTTCATTT |
Citrobacter koseri ATCC BAA-895 | CKO_01725 | -249 | 5.5 | AAATGAAACGCTATTTTTATA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02160 | -254 | 5.1 | AATTGAAACGCTATTTTTGTT |
Enterobacter sp. 638 | Ent638_1745 | -249 | 5.3 | AAATGAAATGGTGTTTTTAAT |
Serratia proteamaculans 568 | Spro_2174 | -364 | 5.2 | AAgTaAAACAcTaTTTCAaaT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1853 | -227 | 5.6 | TATTAAAACGCCATTTCATTA |
Position: -94
Score: 5.7 Sequence: TAATGAAATAGTGTTTTAATA
Locus tag: Pecwa_2759
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Pecwa_2759 | -94 | 5.7 | TAATGAAATAGTGTTTTAATA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsR | ||||
Ortholog function: PEP synthetase regulatory protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |
Position: -54
Score: 5.1 Sequence: AATTGAAATACAGTTTTAAAA
Locus tag: Pecwa_2864
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Pecwa_2864 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: spiX | ||||
Ortholog function: predicted 5-keto-4-deoxyuronate isomerase | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1742 | -54 | 5.1 | AATTGAAATACAGTTTTAAAA |
Position: -37
Score: 5.7 Sequence: TATTAAAACGATATTTCATTA
Locus tag: Pecwa_3223
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Pecwa_3223 | -37 | 5.7 | TATTAAAACGATATTTCATTA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pehN | ||||
Ortholog function: putative polygalacturonase | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1190 | -37 | 5.7 | TATTAAAACGATATTTCATTA |
Position: -98
Score: 4.3 Sequence: TTCTATAAAAGCGTTTTATTT
Locus tag: Pecwa_3321
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Pecwa_3321 | -98 | 4.3 | TTCTATAAAAGCGTTTTATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pehA | ||||
Ortholog function: Polygalacturonase (EC 3.2.1.15) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1095 | -152 | 3.9 | TATGTAAATGGACTTTTATTA |
-100 | 4.3 | TTCTATAAAAGTGTTTTATTT | ||
-65 | 3.9 | AAAGGAAGCGTAATTCCTTTT | ||
Position: -167
Score: 4.7 Sequence: AGTTAAAATGGCTTTTTATAA
Locus tag: Pecwa_3542
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Pecwa_3542 | -167 | 4.7 | AGTTAAAATGGCTTTTTATAA | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: rhiT | ||||
Ortholog function: Rhamnogalacturonide transporter | ||||
Citrobacter koseri ATCC BAA-895 | CKO_01081 | -190 | 5.4 | AATAGAAACGCTGTTTTATAA |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02390 | -200 | 4.9 | AAGAGAAATGCTGTTTTATAA |
Enterobacter sp. 638 | Ent638_2444 | -189 | 5.6 | AAAAGAAACGCTGTTTTATAA |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3560 | -167 | 4.7 | AGTTAAAATGCCTTTTTATAA |
Position: -180
Score: 4.5 Sequence: TATTGAAACGTGATTTCTATC
Locus tag: Pecwa_3873
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Pecwa_3873 | -180 | 4.5 | TATTGAAACGTGATTTCTATC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: chmX | ||||
Ortholog function: methyl-accepting chemotaxis protein | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3902 | -172 | 4.5 | TATTGAAACGTGATTTCTATC |
Position: -99
Score: 4.5 Sequence: AGACAAACCTTAATTTCATTT
Locus tag: Pecwa_4035
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Pecwa_4035 | -99 | 4.5 | AGACAAACCTTAATTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pelC | ||||
Ortholog function: Pectate lyase B precursor (EC 4.2.2.2) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4069 | -289 | 5.4 | AAACGAAATATAATTTTATTT |
-102 | 4.5 | CAATAAACCTTGATTTCATTT | ||
-2 | 4.1 | AAATGAAACGTTCTCTTCTGT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4067 | -231 | 4.2 | AAATAGAAATCAGTTTCTATT |
-99 | 4.5 | AGACAAACCTTAATTTCATTT | ||
-77 | 4.1 | TGTTGAAACAGCCATTTTATT | ||
Position: -298
Score: 4.5 Sequence: TAATAAAACGAAATATAATTT
Position: -293
Score: 5.2 Sequence: AAACGAAATATAATTTCGTTT
Position: -288
Score: 4.4 Sequence: AAATATAATTTCGTTTTTAAT
Locus tag: Pecwa_4037
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Pecwa_4037 | -298 | 4.5 | TAATAAAACGAAATATAATTT | |
-293 | 5.2 | AAACGAAATATAATTTCGTTT | ||
-288 | 4.4 | AAATATAATTTCGTTTTTAAT | ||
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pelC | ||||
Ortholog function: Pectate lyase B precursor (EC 4.2.2.2) | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4069 | -289 | 5.4 | AAACGAAATATAATTTTATTT |
-102 | 4.5 | CAATAAACCTTGATTTCATTT | ||
-2 | 4.1 | AAATGAAACGTTCTCTTCTGT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4067 | -231 | 4.2 | AAATAGAAATCAGTTTCTATT |
-99 | 4.5 | AGACAAACCTTAATTTCATTT | ||
-77 | 4.1 | TGTTGAAACAGCCATTTTATT | ||
Position: -137
Score: 5.9 Sequence: TAATAAAACTACGTTTCATTT
Locus tag: Pecwa_4105
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Pecwa_4105 | -137 | 5.9 | TAATAAAACTACGTTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: rexZ | ||||
Ortholog function: transcriptional regulator of exoenzymes | ||||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4123 | -138 | 5.9 | TAATAAAACTATGTTTCATTT |
-66 | 4.4 | AAATAAATTACCGTTGCGTTA | ||
Position: -85
Score: 5.6 Sequence: TCATAAAACATCGTTTCATTT
Locus tag: Pecwa_4431
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Pecwa_4431 | -85 | 5.6 | TCATAAAACATCGTTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: tpfX | ||||
Ortholog function: ThiJ/PfpI-family hypothetical protein | ||||
Salmonella typhimurium LT2 | STM1931 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT |
Citrobacter koseri ATCC BAA-895 | CKO_01049 | -199 | 5.4 | TTTTGAAATGATGTTTCATAT |
Enterobacter sp. 638 | Ent638_2477 | -42 | 5 | GGATGAAACGCTGTTTTAAAT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0102 | -85 | 6.1 | TAATAAAACATCGTTTCATTT |
Position: -66
Score: 6 Sequence: AAAAGAAACAGCGTTTCATTT
Locus tag: Pecwa_4562
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Pecwa_4562 | -66 | 6 | AAAAGAAACAGCGTTTCATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: pelX | ||||
Ortholog function: Pectate disaccharide-lyase | ||||
Enterobacter sp. 638 | Ent638_4134 | -102 | 5.2 | AAGCAAAACAACGTTTTAATT |
-60 | 5.7 | AAAAGAAACGACGTTTCATCT | ||
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4510 | -130 | 5.3 | AAATGACACGGTGTTTCATAA |
-113 | 4.2 | ATAAAAAACAGACTTTATTTT | ||
-66 | 6 | AAAAGAAACAGCGTTTCATTT | ||