Propagation of Fnr regulog to Dickeya zeae Ech1591
| Source regulog: | Fnr - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Energy metabolism; Anaerobic metabolism |
| Effector: | Oxygen |
| Phylum: | Gammaproteobacteria |
| Propagated regulon: | |
| Target genome | Dickeya zeae Ech1591 |
| Orthologous TF(s) | Dd1591_2081 |
| Regulated genes | 57 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -236
Score: 4.7 Sequence: TTGATAAAGAACAA
Position: -176
Score: 3.8 Sequence: GTGATTCAAATCAC
Position: 3
Score: 3.7 Sequence: TTGAGTATTTTCAA
Locus tag: Dd1591_0199
|
||||
| Dd1591_0199 | -236 | 4.7 | TTGATAAAGAACAA | |
| -176 | 3.8 | GTGATTCAAATCAC | ||
| 3 | 3.7 | TTGAGTATTTTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpT | ||||
| Ortholog function: Glycerol-3-phosphate transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00537 | -257 | 3.7 | TCGTTTTTTATCAT |
| Edwardsiella tarda EIB202 | ETAE_3116 | -301 | 3.8 | GTGATCAAAATCAC |
| Enterobacter sp. 638 | Ent638_2804 | -197 | 4.2 | TTGATTTCGAACAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4166 | -249 | 4.3 | TTGATAAAGAGCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02646 | -214 | 3.8 | TTGATTTCGAGCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4119 | -306 | 4.2 | TTGATAAAGAACAG |
| Proteus mirabilis HI4320 | PMI3591 | -287 | 4 | TTGATAATGAGCAA |
| -45 | 4.9 | TTGTTTAATATCAA | ||
| Salmonella typhimurium LT2 | STM2283 | -256 | 3.7 | TCGTTTTTTATCAT |
| Serratia proteamaculans 568 | Spro_0199 | -305 | 4.3 | TTGATAAGGAACAA |
|
Position: -137
Score: 3.8 Sequence: GTGATTTGAATCAC
Position: -77
Score: 4.7 Sequence: TTGTTCTTTATCAA
Locus tag: Dd1591_0200
|
||||
| Dd1591_0200 | -137 | 3.8 | GTGATTTGAATCAC | |
| -77 | 4.7 | TTGTTCTTTATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: glpA | ||||
| Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00536 | -30 | 3.8 | ATGATAAAAAACGA |
| Edwardsiella tarda EIB202 | ETAE_3115 | -78 | 4.1 | TTGCTCCTTATCAA |
| Enterobacter sp. 638 | Ent638_2805 | -69 | 4.3 | ATGTTCGAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4165 | -84 | 4.5 | TTGCTCTTTATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2241 | -71 | 3.6 | ATGCGCGAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02647 | -71 | 4.1 | ATGCTCGAAATCAA |
| Proteus mirabilis HI4320 | PMI3592 | -107 | 4.2 | TTGCTCATTATCAA |
| Salmonella typhimurium LT2 | STM2284 | -30 | 3.8 | ATGATAAAAAACGA |
| Serratia proteamaculans 568 | Spro_0200 | -74 | 4.3 | TTGTTCCTTATCAA |
| Yersinia pestis KIM | y0404 | -145 | 4.3 | TTGATCACAATCAT |
| -91 | 4.4 | TTGTTTCTTATCAA | ||
|
Position: -147
Score: 4.1 Sequence: TTAATTTAAATTAA
Locus tag: Dd1591_0365
|
||||
| Dd1591_0365 | -147 | 4.1 | TTAATTTAAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: aceB | ||||
| Ortholog function: Malate synthase (EC 2.3.3.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03906 | -162 | 4.2 | TTTATTGTTATCAA |
| Enterobacter sp. 638 | Ent638_0218 | -111 | 4 | TTGATTTTAGAAAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04395 | -154 | 4.1 | TTCATTGTTATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4396 | -61 | 4 | |
| Proteus mirabilis HI4320 | PMI2764 | -64 | 4.2 | |
|
Position: -31
Score: 3.6 Sequence: TTTATTTAACTTAA
Locus tag: Dd1591_0382
|
||||
| Dd1591_0382 | -31 | 3.6 | TTTATTTAACTTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: frdA | ||||
| Ortholog function: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03678 | -151 | 4 | TTAATCAGAATCAA |
| Enterobacter sp. 638 | Ent638_0343 | -31 | 3.6 | TTGCGGAATAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4124 | -239 | 4.1 | |
| Proteus mirabilis HI4320 | PMI3588 | -208 | 4 | |
| Salmonella typhimurium LT2 | STM4343 | -191 | 4.4 | TTAATCAAAATCAA |
| Serratia proteamaculans 568 | Spro_0419 | -63 | 3.7 | TTTATAAATATTAA |
|
Position: -290
Score: 5 Sequence: TTGATATATGTCAA
Locus tag: Dd1591_0531
|
||||
| Dd1591_0531 | -290 | 5 | TTGATATATGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: arcA | ||||
| Ortholog function: Aerobic respiration control protein arcA | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03387 | -291 | 5.1 | TTGATATATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_0561 | -300 | 5.1 | TTGATATATGTCAA |
| Enterobacter sp. 638 | Ent638_0562 | -291 | 5.1 | TTGATATATGTCAA |
| Erwinia amylovora ATCC 49946 | EAM_0640 | -399 | 4.5 | TTGATGCAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3893 | -339 | 5.1 | TTGATATATGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4401 | -291 | 5.1 | TTGATATATGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04856 | -291 | 5.1 | TTGATATATGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu0562 | -282 | 4.9 | TTGATGTACGTCAA |
| Proteus mirabilis HI4320 | PMI3719 | -343 | 4 | ATTACATAAATCAA |
| -282 | 4.6 | TTGATATGTGTCAA | ||
| Salmonella typhimurium LT2 | STM4598 | -291 | 5.1 | TTGATATATGTCAA |
| Serratia proteamaculans 568 | Spro_0681 | -299 | 5.1 | TTGATATATGTCAA |
| Yersinia pestis KIM | y3721 | -298 | 5.1 | TTGATATATGTCAA |
|
Position: -284
Score: 5.1 Sequence: TTGATTCAAATCAA
Position: -231
Score: 5.1 Sequence: TTGTTTTATATCAA
Locus tag: Dd1591_1057
|
||||
| Dd1591_1057 | -284 | 5.1 | TTGATTCAAATCAA | |
| -231 | 5.1 | TTGTTTTATATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ung | ||||
| Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00204 | -209 | 5.6 | TTGATTTAAATCAA |
| -156 | 5.1 | TTGTTTTACATCAA | ||
| Edwardsiella tarda EIB202 | ETAE_2734 | -396 | 4.1 | TTGAGATAGAGCAA |
| -280 | 5.4 | TTGATCTAAATCAA | ||
| -227 | 4.7 | ATGTTTTACATCAA | ||
| Enterobacter sp. 638 | Ent638_3065 | -194 | 5 | TTGACCTAAATCAA |
| -142 | 5.1 | TTGTTTTATATCAA | ||
| 34 | 4.2 | CTGATGAAAAACAA | ||
| Erwinia amylovora ATCC 49946 | EAM_2526 | -177 | 4.9 | TTGATGCAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3289 | -228 | 5.1 | TTGACTTAAATCAA |
| -175 | 5.1 | TTGTTTTATATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b2580 | -197 | 5.6 | TTGATTTAAATCAA |
| -144 | 5.1 | TTGTTTTACATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02903 | -206 | 5.5 | TTGATATAAATCAA |
| -153 | 5.1 | TTGTTTTACATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3371 | -233 | 4.1 | TTGATTCAGAACAG |
| Proteus mirabilis HI4320 | PMI1899 | -221 | 5.1 | TTGATAAATATCAA |
| -168 | 5.2 | TTGTTTTAAATCAA | ||
| Salmonella typhimurium LT2 | STM2647 | -208 | 5.6 | TTGATTTAAATCAA |
| -155 | 5.1 | TTGTTTTACATCAA | ||
| Serratia proteamaculans 568 | Spro_3683 | -222 | 5 | TTGATTAAAGTCAA |
| -169 | 4.4 | ATGTTTTATGTCAA | ||
| Yersinia pestis KIM | y1281 | -213 | 5.2 | TTGATTCAAATCAA |
| -160 | 4.7 | ATGTTTTATATCAA | ||
|
Position: -91
Score: 4.1 Sequence: ATGATGTTAATCAT
Position: -82
Score: 3.7 Sequence: ATCATAAATGTCAA
Locus tag: Dd1591_1385
|
||||
| Dd1591_1385 | -91 | 4.1 | ATGATGTTAATCAT | |
| -82 | 3.7 | ATCATAAATGTCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ackA | ||||
| Ortholog function: Acetate kinase (EC 2.7.2.1) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00498 | -92 | 4.1 | ATGATGTTAATCAT |
| Edwardsiella tarda EIB202 | ETAE_2397 | -93 | 4.1 | ATGATGTTAATCAT |
| Enterobacter sp. 638 | Ent638_2840 | -92 | 4.1 | ATGATGTTAATCAT |
| Erwinia amylovora ATCC 49946 | EAM_2301 | -119 | 3.9 | TTGCTTTCGGACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3039 | -91 | 4.1 | ATGATGTTAATCAT |
| Escherichia coli str. K-12 substr. MG1655 | b2296 | -92 | 4.1 | ATGATGTTAATCAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02687 | -91 | 4.1 | ATGATGTTAATCAT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3095 | -117 | 4.1 | ATGATGTTAATCAT |
| Proteus mirabilis HI4320 | PMI1771 | -165 | 3.7 | TTGATGATTGGCAA |
| Salmonella typhimurium LT2 | STM2337 | -92 | 4.1 | ATGATGTTAATCAT |
| Serratia proteamaculans 568 | Spro_3316 | -121 | 4.1 | ATGATGTTAATCAT |
| Yersinia pestis KIM | y1622 | -163 | 4.1 | ATGATGTTAATCAT |
|
Position: -153
Score: 5.4 Sequence: TTGATATAAATCAA
Locus tag: Dd1591_1639
|
||||
| Dd1591_1639 | -153 | 5.4 | TTGATATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ndh | ||||
| Ortholog function: NADH dehydrogenase (EC 1.6.99.3) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01946 | -163 | 5.2 | TTGATGTACATCAA |
| Edwardsiella tarda EIB202 | ETAE_2070 | -162 | 5.1 | TTGATTTGAATCAA |
| Enterobacter sp. 638 | Ent638_1624 | -149 | 5.1 | TTGATTCATATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1473 | -146 | 4.2 | TTGACCAGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1815 | -149 | 5.4 | TTGATATATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1109 | -150 | 5.2 | TTGATTAACATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01106 | -148 | 4.8 | TTGATGCACATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2821 | -150 | 4.2 | TTGATGTTGTTCAA |
| Proteus mirabilis HI4320 | PMI0875 | -153 | 5.5 | TTGATATAAATCAA |
| Salmonella typhimurium LT2 | STM1211 | -150 | 4.8 | TTGATGCACATCAA |
| Serratia proteamaculans 568 | Spro_1926 | -149 | 5.2 | TTGATGTACATCAA |
| Yersinia pestis KIM | y1777 | -148 | 5.4 | TTGATATATATCAA |
|
Position: -350
Score: 4.9 Sequence: TTGCTATAAATCAA
Locus tag: Dd1591_1730
|
||||
| Dd1591_1730 | -350 | 4.9 | TTGCTATAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnA | ||||
| Ortholog function: Aconitate hydratase (EC 4.2.1.3); 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Enterobacter sp. 638 | Ent638_2192 | -135 | 4.6 | TTGTTTTATCTCAA |
| Erwinia amylovora ATCC 49946 | EAM_1866 | 37 | 4.4 | TGGATGTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1941 | -98 | 3.7 | ATGAGCTTACTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1276 | -133 | 3.7 | TTGCTTTGCCACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2432 | 7 | 4.6 | TTGATTTAAAAAAA |
| Salmonella typhimurium LT2 | STM1712 | -301 | 3.9 | TTGATTAAACACAG |
| Yersinia pestis KIM | y2063 | -37 | 3.9 | TTGAATTAAAACAC |
|
Position: -82
Score: 5.2 Sequence: TTGATGTATATCAA
Locus tag: Dd1591_1850
|
||||
| Dd1591_1850 | -82 | 5.2 | TTGATGTATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narK | ||||
| Ortholog function: Nitrate/nitrite antiporter | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2030 | -82 | 5 | TTGATTTGCATCAA |
|
Position: -117
Score: 4.3 Sequence: TTGATCGCTGTCAA
Locus tag: Dd1591_1853
|
||||
| Dd1591_1853 | -117 | 4.3 | TTGATCGCTGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: narG | ||||
| Ortholog function: Respiratory nitrate reductase alpha chain (EC 1.7.99.4) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2031 | -141 | 4.7 | TTGATCGTTATCAA |
| Proteus mirabilis HI4320 | PMI3571 | -73 | 4.3 | |
| Serratia proteamaculans 568 | Spro_2883 | -140 | 4.7 | TTGATCGCAATCAA |
|
Position: -34
Score: 4.6 Sequence: TTGACCAATATCAA
Locus tag: Dd1591_2081
|
||||
| Dd1591_2081 | -34 | 4.6 | TTGACCAATATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fnr | ||||
| Ortholog function: Fumarate and nitrate reduction regulatory protein | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01409 | -83 | 3.8 | TTGATGTAAAGTAA |
| Edwardsiella tarda EIB202 | ETAE_1744 | -133 | 3.4 | GTGCTATACATCAC |
| -33 | 4.6 | TTGACCGATATCAA | ||
| Enterobacter sp. 638 | Ent638_1853 | -33 | 4.6 | TTGACCAATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2207 | -34 | 4.6 | TTGACCAATATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1334 | -33 | 4.7 | TTGACAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01530 | -327 | 4.6 | TTGACCAATATCAA |
| -185 | 3.5 | ATGAGCTTGATCAG | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2179 | -35 | 3.4 | TTGAAGGATATGAA |
| Proteus mirabilis HI4320 | PMI1203 | -40 | 4.5 | TTGACACATATCAA |
| Salmonella typhimurium LT2 | STM1660.S | -33 | 4.7 | TTGACAAATATCAA |
| Serratia proteamaculans 568 | Spro_2582 | -34 | 4.4 | TTGACGCATATCAA |
| Yersinia pestis KIM | y2132 | -32 | 4.4 | TTGACGCATATCAA |
|
Position: -159
Score: 5 Sequence: TTGATTTGGATCAA
Locus tag: Dd1591_2180
|
||||
| Dd1591_2180 | -159 | 5 | TTGATTTGGATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_01333 | -117 | 4.1 | TTAATCTGGATCAA |
| Edwardsiella tarda EIB202 | ETAE_1528 | -157 | 4.9 | TTGATGTCTATCAA |
| Enterobacter sp. 638 | Ent638_2283 | -117 | 4.1 | TTAATCTGGATCAA |
| Erwinia amylovora ATCC 49946 | EAM_1884 | -160 | 5.4 | TTGATCTAAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2303 | -160 | 4.8 | TTGATCTGGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b1256 | -162 | 4.8 | TTGATTTAAATCAC |
| -117 | 4.1 | TTAATCCAGATCAA | ||
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_01248 | -247 | 4.2 | TTGATTTCACTCAT |
| -80 | 4.1 | TTAATCTGGATCAA | ||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2478 | -160 | 5 | TTGATTTGGATCAA |
| Proteus mirabilis HI4320 | PMI1350 | -164 | 4.8 | TTGATGTGGATCAA |
| Salmonella typhimurium LT2 | STM1732 | -117 | 4.1 | TTAATCTGGATCAA |
| Serratia proteamaculans 568 | Spro_2674 | -131 | 5 | TTGATTCAGATCAA |
| Yersinia pestis KIM | y2044 | -171 | 3.6 | ATGATAAATGGCAA |
| -147 | 4.4 | ATGATCCAGATCAA | ||
|
Position: 0
Score: 3.7 Sequence: ATGAAAATTATCAA
Locus tag: Dd1591_2321
|
||||
| Dd1591_2321 | 0 | 3.7 | ATGAAAATTATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: citD | ||||
| Ortholog function: Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02542 | -184 | 4.1 | GTGAAATAAATCAA |
| Enterobacter sp. 638 | Ent638_3374 | 19 | 4.1 | TTTATAAAGGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2573 | -93 | 3.8 | TTGAGCCAAATAAA |
| Escherichia coli str. K-12 substr. MG1655 | b0617 | -179 | 4.1 | GTGAAATAAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00035 | -125 | 3.6 | TTAATTAACAACAT |
| Salmonella typhimurium LT2 | STM0059 | -227 | 4.2 | TTGATGGGTAACAA |
| Salmonella typhimurium LT2 | STM0623 | -182 | 4.1 | GTGAAATAAATCAA |
|
Position: -75
Score: 4.1 Sequence: ATGATCCACGTCAA
Locus tag: Dd1591_2344
|
||||
| Dd1591_2344 | -75 | 4.1 | ATGATCCACGTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: focA | ||||
| Ortholog function: Formate efflux transporter (TC 2.A.44 family) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02167 | -116 | 4.9 | ATGATCTATATCAA |
| Edwardsiella tarda EIB202 | ETAE_2181 | -117 | 4.2 | ATGATCCATGTCAA |
| Enterobacter sp. 638 | Ent638_1424 | -74 | 4.9 | ATGATCTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2596 | -228 | 4 | ATGATTTTTATTAA |
| -75 | 4.5 | ATGATCCACATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b0904 | -74 | 4.9 | ATGATCTATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00932 | -117 | 4.9 | ATGATCTATATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1614 | -267 | 4.1 | TTTATTTGCAACAA |
| -159 | 4.7 | TTTATTAAAATCAA | ||
| -84 | 4.9 | ATGATCTATATCAA | ||
| Proteus mirabilis HI4320 | PMI0706 | -159 | 4.1 | TTATTATTAATCAA |
| -85 | 4.5 | ATGATCCATATCAA | ||
| Salmonella typhimurium LT2 | STM0974 | -74 | 4.9 | ATGATCTATATCAA |
| Serratia proteamaculans 568 | Spro_1703 | -143 | 3.9 | ATAATTTAACTCAA |
| -81 | 4.6 | ATGATCCAAATCAA | ||
| Yersinia pestis KIM | y2789 | -80 | 4.5 | ATGATCCATATCAA |
|
Position: -112
Score: 4.4 Sequence: TTGCGCTAAATCAA
Locus tag: Dd1591_2371
|
||||
| Dd1591_2371 | -112 | 4.4 | TTGCGCTAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Edwardsiella tarda EIB202 | ETAE_2215 | -113 | 4.4 | TTGCGTTATATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2662 | -114 | 4.4 | TTGCGCTAAATCAA |
| Proteus mirabilis HI4320 | PMI2112 | -131 | 4.4 | TTGCGTTAGATCAA |
| Serratia proteamaculans 568 | Spro_1666 | -66 | 4.4 | TTGCGCTAAATCAA |
| Yersinia pestis KIM | y2819 | -115 | 4.1 | TTGCGTCAAATCAA |
|
Position: -69
Score: 3.3 Sequence: TATAGATACATCAA
Locus tag: Dd1591_2547
|
||||
| Dd1591_2547 | -69 | 3.3 | TATAGATACATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moeA | ||||
| Ortholog function: Molybdopterin biosynthesis protein MoeA | ||||
| Edwardsiella tarda EIB202 | ETAE_1153 | -335 | 3.8 | ATGATACAGATCAC |
| Enterobacter sp. 638 | Ent638_1321 | -155 | 3.3 | TCTATAAATATCAT |
| Erwinia amylovora ATCC 49946 | EAM_1284 | -244 | 3.5 | CTGTGATAAATCAG |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2836 | -383 | 3.7 | ATGATGTAAAGCAG |
| Escherichia coli str. K-12 substr. MG1655 | b0827 | 18 | 3.7 | TTGATGTCGCTCGA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1540 | -244 | 3.9 | TTGACAGTGGTCAA |
| Proteus mirabilis HI4320 | PMI0637 | -182 | 3.7 | TTAAAATACAACAA |
| Yersinia pestis KIM | y2673 | -202 | 3.8 | TTGATATATATATA |
|
Position: -82
Score: 4.6 Sequence: TTGATTTTGCTCAA
Locus tag: Dd1591_2662
|
||||
| Dd1591_2662 | -82 | 4.6 | TTGATTTTGCTCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fdnG | ||||
| Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1408 | -81 | 3.9 | TTGATTTTGCGCAA |
|
Position: -296
Score: 3.4 Sequence: CTTTTAAAAAACAA
Position: -197
Score: 3.4 Sequence: TTAATTGTTATAAA
Position: -85
Score: 4.1 Sequence: TAGACTTAGATCAA
Locus tag: Dd1591_2701
|
||||
| Dd1591_2701 | -296 | 3.4 | CTTTTAAAAAACAA | |
| -197 | 3.4 | TTAATTGTTATAAA | ||
| -85 | 4.1 | TAGACTTAGATCAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuB | ||||
| Ortholog function: C4-dicarboxylate transporter DcuB | ||||
| Edwardsiella tarda EIB202 | ETAE_2844 | -271 | 3.4 | TTATTTTTTATTAA |
| Enterobacter sp. 638 | Ent638_2479 | -93 | 3.6 | TTGAATTTATACAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1533 | -279 | 3.7 | TTTATTTTCATGAA |
| -243 | 4.5 | TAGATTTAGATCAA | ||
| Escherichia coli str. K-12 substr. MG1655 | b4123 | -283 | 4 | CCGATAAATATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04367 | -210 | 3.4 | TCTACTCATATCAA |
| Proteus mirabilis HI4320 | PMI0389 | -78 | 3.4 | TTGTTTTTTTGCAA |
| Salmonella typhimurium LT2 | STM4301 | -72 | 3.5 | TTCACAAAAATCAG |
| Serratia proteamaculans 568 | Spro_3863 | -189 | 3.8 | CAGATTAAAATCAA |
| Yersinia pestis KIM | y0901 | -239 | 3.4 | TTAATTTAAAGCAC |
|
Position: 36
Score: 3.4 Sequence: TTGCTGATCATCAC
Locus tag: Dd1591_2711
|
||||
| Dd1591_2711 | 36 | 3.4 | TTGCTGATCATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hyfE | ||||
| Ortholog function: Hydrogenase-4 component E (EC 1.-.-.-) | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1243 | -91 | 3.5 | TTGAATTAAAGAAA |
| Escherichia coli str. K-12 substr. MG1655 | b2485 | -29 | 3.8 | ATGTTTCATATCAT |
| Proteus mirabilis HI4320 | PMI2524 | -114 | 4.9 | TTGATTTTTAACAA |
|
Position: -252
Score: 3.8 Sequence: GTGATCTTAATCAC
Locus tag: Dd1591_2918
|
||||
| Dd1591_2918 | -252 | 3.8 | GTGATCTTAATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_02438 | 25 | 3.6 | ATGTGAAAAAACAA |
| Edwardsiella tarda EIB202 | ETAE_2588 | 10 | 4 | |
| Escherichia coli str. K-12 substr. MG1655 | b0721 | 10 | 3.6 | ATGTGAAAAAACAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00728 | -104 | 3.6 | ATGTGAAAAAACAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1426 | -127 | 4 | TTGTGAAAAAACAA |
| Proteus mirabilis HI4320 | PMI0565 | -2 | 4 | TTGTGAAAAAACAA |
| Salmonella typhimurium LT2 | STM0732 | 10 | 3.6 | ATGTGAAAAAACAA |
| Serratia proteamaculans 568 | Spro_1263 | -249 | 4.1 | GTGATCTAAATCAC |
| Yersinia pestis KIM | y3071 | -224 | 3.8 | ATGTTATCAATCAG |
|
Position: -100
Score: 4.4 Sequence: TTGATTTGGATCAG
Locus tag: Dd1591_2991
|
||||
| Dd1591_2991 | -100 | 4.4 | TTGATTTGGATCAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: upp | ||||
| Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00293 | -103 | 4.6 | TTGATCCATGTCAA |
| Edwardsiella tarda EIB202 | ETAE_1087 | -97 | 4.5 | TTGATTGAGATCAT |
| Enterobacter sp. 638 | Ent638_2986 | -97 | 4.4 | TTGATCACCGTCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1255 | -169 | 4.3 | TTGATCTGGATCAG |
| Escherichia coli str. K-12 substr. MG1655 | b2498 | -95 | 4.6 | TTGACTAAAGTCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02821 | -96 | 5 | TTGATATACGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2759 | -103 | 5.1 | TTGATGAAAATCAA |
| Proteus mirabilis HI4320 | PMI1574 | -97 | 5.1 | TTGATCAATATCAA |
| Salmonella typhimurium LT2 | STM2498 | -103 | 4.6 | TTGATCCAGGTCAA |
| Yersinia pestis KIM | y1408 | -98 | 4.4 | TTGATCTGAATCAG |
|
Position: -188
Score: 4.5 Sequence: CTGATCCAAATCAA
Locus tag: Dd1591_2992
|
||||
| Dd1591_2992 | -188 | 4.5 | CTGATCCAAATCAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purM | ||||
| Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) | ||||
| Edwardsiella tarda EIB202 | ETAE_1086 | -186 | 4.7 | ATGATCTCAATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1254 | -198 | 4.3 | CTGATCCAGATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b2499 | -243 | 4.6 | TTGACTTTAGTCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu2760 | -137 | 5.2 | TTGATTTTCATCAA |
| Proteus mirabilis HI4320 | PMI1575 | -148 | 5 | TTGATATTGATCAA |
| Salmonella typhimurium LT2 | STM2499.S | -309 | 4.4 | TTGACCTGGATCAA |
| Yersinia pestis KIM | y1407 | -312 | 4.5 | CTGATTCAGATCAA |
| -274 | 3.7 | ATGCTAAAAATCAG | ||
|
Position: -226
Score: 3.9 Sequence: TTGAGTGATATCAC
Locus tag: Dd1591_3511
|
||||
| Dd1591_3511 | -226 | 3.9 | TTGAGTGATATCAC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: uxaC | ||||
| Ortholog function: Uronate isomerase (EC 5.3.1.12) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_04494 | -43 | 3.8 | TTGATCCAACTCAC |
| Enterobacter sp. 638 | Ent638_3546 | -105 | 4.2 | TTGATCTAACTCAC |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0645 | -225 | 3.9 | TTGAGTGATATCAC |
| Escherichia coli str. K-12 substr. MG1655 | b3092 | -106 | 4.2 | TTGATCTAACTCAC |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03520 | -125 | 4.2 | TTGATCTAACTCAC |
|
Position: -167
Score: 3.6 Sequence: CTGATTTGCAACAG
Locus tag: Dd1591_3528
|
||||
| Dd1591_3528 | -167 | 3.6 | CTGATTTGCAACAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ubiC | ||||
| Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40) | ||||
| Erwinia amylovora ATCC 49946 | EAM_0260 | -194 | 3.8 | CTGATATTAGTCAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0626 | -230 | 3.3 | GTGACTAGGGTCAA |
| Escherichia coli str. K-12 substr. MG1655 | b4039 | -70 | 3.4 | TTGCTTTACATCTC |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4378 | -253 | 3.8 | TTATTTTTGGTCAA |
| Proteus mirabilis HI4320 | PMI2753 | -163 | 4.3 | TTGTTTTTTCTCAA |
| Serratia proteamaculans 568 | Spro_4464 | -223 | 3.6 | TTGCTGGAGATCAC |
| Yersinia pestis KIM | y0568 | -253 | 3.3 | CTGATATTTATAAT |
|
Position: -227
Score: 3.5 Sequence: TCTATTTACATAAA
Position: -209
Score: 4.1 Sequence: GTGATTTACATCAC
Locus tag: Dd1591_3933
|
||||
| Dd1591_3933 | -227 | 3.5 | TCTATTTACATAAA | |
| -209 | 4.1 | GTGATTTACATCAC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ysgA | ||||
| Ortholog function: Predcited carboxymethylenebutenolidase (EC 3.1.1.45) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_00172 | -133 | 4.1 | GTGATTTACATCAC |
| Erwinia amylovora ATCC 49946 | EAM_0199 | -199 | 3.6 | TTAATCAAAATGAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0184 | -155 | 3.8 | GTGACTTAAATCAC |
| Salmonella typhimurium LT2 | STM3967 | -169 | 4.2 | ATGACGTAAAACAA |
| Serratia proteamaculans 568 | Spro_0243 | -174 | 3.8 | TTAATGCAGGTCAA |
| Yersinia pestis KIM | y0443 | -296 | 4.2 | GTGATTTAAATCAC |
|
Position: -130
Score: 4 Sequence: CTGACCTGAATCAA
Position: -91
Score: 3.7 Sequence: ATGTTGATAAACAA
Locus tag: Dd1591_4019
|
||||
| Dd1591_4019 | -130 | 4 | CTGACCTGAATCAA | |
| -91 | 3.7 | ATGTTGATAAACAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pfkA | ||||
| Ortholog function: 6-phosphofructokinase (EC 2.7.1.11) | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03085 | -132 | 4 | CTGACCTGAATCAA |
| Edwardsiella tarda EIB202 | ETAE_3450 | -223 | 4 | CTGACCTGAATCAA |
| Enterobacter sp. 638 | Ent638_4056 | -174 | 4 | CTGACCTGAATCAA |
| Erwinia amylovora ATCC 49946 | EAM_0103 | -31 | 4 | ATTATTTGCATCAA |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA4307 | -140 | 4 | CTGACCTGAATCAA |
| Escherichia coli str. K-12 substr. MG1655 | b3916 | -125 | 4 | CTGACCTGAATCAA |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04223 | -123 | 4 | CTGACCTGAATCAA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4774 | -203 | 4.1 | TTGATCTCAAAAAA |
| Proteus mirabilis HI4320 | PMI3203 | -194 | 3.7 | TTAATGCGCATCAA |
| Salmonella typhimurium LT2 | STM4062 | -126 | 4 | CTGACCTGAATCAA |
| Serratia proteamaculans 568 | Spro_4807 | -145 | 4.1 | GTGACTTGAATCAA |
| Yersinia pestis KIM | y0059 | -148 | 4.2 | CTGACTTGAATCAA |
|
Position: -6
Score: 3.6 Sequence: TTGACCATGATAAA
Locus tag: Dd1591_4101
|
||||
| Dd1591_4101 | -6 | 3.6 | TTGACCATGATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuR | ||||
| Ortholog function: Fumarate respiration transcriptional regulator DcuR | ||||
| Serratia proteamaculans 568 | Spro_1958 | -188 | 3.3 | TTAATGGCTATCAT |
|
Position: 0
Score: 3.3 Sequence: ATGAGTAAAAAAAA
Locus tag: Dd1591_4102
|
||||
| Dd1591_4102 | 0 | 3.3 | ATGAGTAAAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: dcuS | ||||
| Ortholog function: Fumarate respiration sensor kinase protein DcuS | ||||
| Citrobacter koseri ATCC BAA-895 | CKO_03745 | -199 | 3.3 | GTGATCCCCATCAG |
| Enterobacter sp. 638 | Ent638_2555 | -122 | 3.7 | TTTATATAGGTCAC |
| Erwinia amylovora ATCC 49946 | EAM_1542 | -115 | 3.4 | TTGCTTAAGATCGT |
| Escherichia coli str. K-12 substr. MG1655 | b4125 | -311 | 3.6 | TTGAGATTAAATAA |
| Salmonella typhimurium LT2 | STM4304 | -274 | 4.8 | TTGATTGTGATCAA |
| -177 | 3.9 | CTGATGAAAATAAA | ||
| Serratia proteamaculans 568 | Spro_1959 | -188 | 3.3 | TTAATGGCTATCAT |
|
Position: -139
Score: 4.5 Sequence: TTGATTTTAATTAA
Locus tag: Dd1591_4117
|
||||
| Dd1591_4117 | -139 | 4.5 | TTGATTTTAATTAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pitA | ||||
| Ortholog function: Phosphate transporter, low-affinity | ||||
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0048 | -140 | 4 | TTGATTTATATTGA |
| Escherichia coli str. K-12 substr. MG1655 | b3493 | -116 | 3.8 | TTGAGTGAAATCCA |
| Salmonella typhimurium LT2 | STM3589 | -116 | 4.2 | GTGATATCAAACAA |
| Yersinia pestis KIM | y3862 | -201 | 4.1 | TTGAATAAAATCAT |