Propagation of Crp regulog to Salmonella enterica subsp. enterica serovar Typhi str. AG3

Reference regulog properties
Source regulog:	Crp - Enterobacteriales
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Carbon catabolism
Effector:	Cyclic 3',5'-AMP
Phylum:	Proteobacteria/gamma
Propagated regulon:
Target genome	Salmonella enterica subsp. enterica serovar Typhi str. AG3
Orthologous TF(s)	Salmonellaentericaenterica_010100047661
Regulated genes	179

Built upon 2301 sites [see more]

Predicted regulatory interactions in *Salmonella enterica subsp. enterica serovar Typhi str. AG3*
	Locus tag	Position	Score	Sequence
Position: -144 Score: 5.3 Sequence: TATTGTGATGCACATCACTTTT Locus tag: Salmonellaentericaenterica_010100000412
	Salmonellaentericaenterica_010100000412	-144	5.3	TATTGTGATGCACATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655	b3831	-144	5.2	TTATGTGATTTGCATCACTTTT
		-92	4.2	CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2	STM3968	-144	5.1	TATTGTGATGAACATCACTTTT
		-92	4.1	CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_00173	-143	5.2	TTATGTGATGTAAATCACTATT
		-91	3.9	CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04327	-143	5.2	TAATGTGATGTGTATCACTATT
		-91	4.1	CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638	Ent638_3962	-143	4.7	TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946	EAM_0200	-143	4.6	AATTGCGACTTGTATCACCTTT
		-90	4	ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM	y0444	-149	5.4	ATGTGTGATTTAAATCACAATT
		-97	4	CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568	Spro_0244	-143	5.3	TTTTGTGACTTTAATCACAAAA
		-125	3.7	AAAAGTTATGTAGATTGCATTC
		-91	4.1	CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0185	-197	5.1	AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202	ETAE_0143	-148	4.7	TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320	PMI3532	-145	5.1	ATTTGTGATAACTATCACGTTT
		-93	3.6	ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4417	-271	5.2	TTTTGTGATTTATATCTCAAAA
		-219	4	TGAAGTGACATTTATCACTAAA

Position: -193 Score: 5 Sequence: TTTTGTGAGATAATTCGCATTA Locus tag: Salmonellaentericaenterica_010100001334
	Salmonellaentericaenterica_010100001334	-193	5	TTTTGTGAGATAATTCGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655	b4208	-198	4.7	TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2	STM4398	-193	5.1	TTTTGTGAGCTAATTCGCATTA
		-170	3.9	CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895	CKO_03624	-199	4.4	TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04601	-192	4.7	TTTTGTGAGCTATTTCGCGTTA
		-169	3.8	ATGAGTGATATAACACTCACTT
Enterobacter sp. 638	Ent638_0378	-201	4.2	TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM	y2447	-199	4.5	CACTGTGATGTACTTAACAAAA
		-118	3.7	TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320	PMI1614	-102	4.4	TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu1965	-102	4.6	TATAGTAATCTGTGTCACAATA

Position: -60 Score: 5 Sequence: TTTTGTGATGAGGGTCACGAAA Locus tag: Salmonellaentericaenterica_010100002326
	Salmonellaentericaenterica_010100002326	-60	5	TTTTGTGATGAGGGTCACGAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcN
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3238	-60	5.1	TTTTGTGATATGGGTCACGAAA
Salmonella typhimurium LT2	STM3361	-60	5	TTTTGTGATGAGGGTCACGAAA
Citrobacter koseri ATCC BAA-895	CKO_04644	-60	5	TTTTGTGATGAGGGTCACGAAA
Enterobacter sp. 638	Ent638_3673	-58	5	TTTTGTGATGAGGGTCACGAAA

Position: -106 Score: 4 Sequence: AATTGCGATCCAGAGCAATTTT Locus tag: Salmonellaentericaenterica_010100002476
	Salmonellaentericaenterica_010100002476	-106	4	AATTGCGATCCAGAGCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aer
Ortholog function: aerotaxis sensor receptor, senses cellular redox state or proton motive force
Escherichia coli str. K-12 substr. MG1655	b3072	-104	5	AATTGCGATCTAAATCAAATTA
Salmonella typhimurium LT2	STM3217	-220	3.6	AAAGGTGAGCCAGGGCAGATTT
		-105	4	AATTGCGATCCAGAGCAATTTT
Citrobacter koseri ATCC BAA-895	CKO_04485	-290	3.9	ATTGGTGATGTTTTGCGCAATG
		-105	5	AATTGCGATCTAAATCAAATTT
Enterobacter sp. 638	Ent638_3527	-106	4.5	AATTGCGATCTGGATCAATTTT

Position: -82 Score: 4 Sequence: AAATGTGATCTGTGTTAGATCA Locus tag: Salmonellaentericaenterica_010100002821
	Salmonellaentericaenterica_010100002821	-82	4	AAATGTGATCTGTGTTAGATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655	b1256	-166	4.9	AAAATTGATTTAAATCACATTA
		-82	3.8	TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2	STM1732	-82	4.2	AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895	CKO_01333	-82	3.9	TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01248	-101	3.9	CATTGCGATCGGTAGCAAAAAT
		-45	4	TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638	Ent638_2283	-121	3.7	AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM	y2044	-69	3.9	AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568	Spro_2674	-135	3.8	TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202	ETAE_1528	-161	3.9	CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320	PMI1350	-168	4.6	AAATTTGATGTGGATCAATTAT
		-85	3.8	AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1	plu2478	-164	4.3	AACTTTGATTTGGATCAAGTTA
		-39	3.8	TATTTTGATTGACTTTAAATCA

Position: -89 Score: 4.7 Sequence: TAGAGTGATATGTATAACATTA Locus tag: Salmonellaentericaenterica_010100002996
	Salmonellaentericaenterica_010100002996	-89	4.7	TAGAGTGATATGTATAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpE
Ortholog function: thiosulfate sulfurtransferase
Escherichia coli str. K-12 substr. MG1655	b3425	-95	4.7	TAGAGTGATATGTATAACATTA
Salmonella typhimurium LT2	STM3525	-104	4.7	TAGAGTGATATGTATAACATTA
Citrobacter koseri ATCC BAA-895	CKO_04844	-108	4.6	TAGAGTGATACATATAACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03791	-107	4.3	TGAAGTGATGGGTGTAACATAT
Enterobacter sp. 638	Ent638_3834	-257	3.8	ATGTTCGATATCGCTCATAATA
		-196	4.6	TTGAGTGATAGAGATAACATAA
Erwinia amylovora ATCC 49946	EAM_3264	-134	3.9	ATGCGTGATGCCGATAACGTCT
Photorhabdus luminescens subsp. laumondii TTO1	plu0197	-102	3.6	TAACGTATTACTGATAACAAAT

Position: -116 Score: 4.4 Sequence: TAATGTTATACATATCACTCTA Locus tag: Salmonellaentericaenterica_010100003001
	Salmonellaentericaenterica_010100003001	-116	4.4	TAATGTTATACATATCACTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b3426	-116	4.4	TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2	STM3526	-116	4.4	TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895	CKO_04845	-116	4.5	TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03792	-119	3.7	ATATGTTACACCCATCACTTCA
		-58	3.7	TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638	Ent638_3835	-116	4.4	TTATGTTATCTCTATCACTCAA
		-55	4	TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946	EAM_3265	-124	4	AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM	y3891	-129	4.4	AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568	Spro_4642	-129	3.6	AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4141	-144	4.3	TAATGTGACAACTATCATCATA
		-124	4.4	TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202	ETAE_3312	-124	4.3	TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320	PMI2930	-129	4.4	AATTGTTATTTATATCACGCAG

Position: -161 Score: 3.6 Sequence: AACTCTCATCCAGATCACGTTT Position: -92 Score: 4 Sequence: TTTTGTGGCGTTAATCACGGTT Locus tag: Salmonellaentericaenterica_010100003711
	Salmonellaentericaenterica_010100003711	-161	3.6	AACTCTCATCCAGATCACGTTT
		-92	4	TTTTGTGGCGTTAATCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lsrR
Ortholog function: LsrR, transcriptional repressor of lsr operon
Escherichia coli str. K-12 substr. MG1655	b1512	-87	4.1	AACTGTGGTTGCCATCACAGAT
Salmonella typhimurium LT2	STM4073	-161	3.6	AACTCTCATCCAGATCACGTTT
		-92	4	TTTTGTGGCGTTAATCACGGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03508	-75	3.7	TTTTGCCAGTCGGCTCACACTT
Enterobacter sp. 638	Ent638_3537	-122	3.4	TTTATTGATTAGGATCCAATTC
Photorhabdus luminescens subsp. laumondii TTO1	plu3142	-137	4.3	AATTGTGATCTTGGCAATATTT

Position: -61 Score: 3.7 Sequence: TTCTGTGACTGGCGTTACAATC Locus tag: Salmonellaentericaenterica_010100003871
	Salmonellaentericaenterica_010100003871	-61	3.7	TTCTGTGACTGGCGTTACAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pgi
Ortholog function: Glucose-6-phosphate isomerase (EC 5.3.1.9)
Salmonella typhimurium LT2	STM4221	-61	3.7	TTCTGTGACTGGCGTTACAATC
Citrobacter koseri ATCC BAA-895	CKO_03893	-61	4.1	TTTTGTGACTGGCGTTACAATC
Serratia proteamaculans 568	Spro_4477	-80	3.7	AAAAGAGATCATAATCACAGTC
Proteus mirabilis HI4320	PMI2754	-245	3.7	CAGTGAGATGTTAAACACAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4379	-205	3.8	TGACGCGATGAGAATCATAAAA

Position: -64 Score: 4 Sequence: TATCGTGATGCCCATCACTTCC Locus tag: Salmonellaentericaenterica_010100003991
	Salmonellaentericaenterica_010100003991	-64	4	TATCGTGATGCCCATCACTTCC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655	b1704	-106	4.3	AGGTGTGACACACCTCGCACTT
		-64	4	TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2	STM1347	-106	4.3	AGGTGTGACACGCCTCGCACTT
		-64	4	TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895	CKO_01728	-115	4.3	AGGTGTGAAACGCCTCGCATTT
		-64	4.3	TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02162	-63	4	TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638	Ent638_1743	-126	3.6	AGTTATGATCGCTTTCACTCTC
		-62	3.6	TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM	y1928	-64	4.3	TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568	Spro_2172	-135	3.9	TTTTGTGCTTTTTTTAGCGATT
		-64	4.3	TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202	ETAE_1792	-63	4	TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320	PMI1423	-55	3.9	TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1	plu2630	-62	3.8	TATTGTAATTTCCATTATCTAT

Position: -180 Score: 3.8 Sequence: ATGTTTGATTTCGCGCGCCTTT Position: -131 Score: 5.2 Sequence: ATATGTGCTGTAATTCACATTA Locus tag: Salmonellaentericaenterica_010100004361
	Salmonellaentericaenterica_010100004361	-180	3.8	ATGTTTGATTTCGCGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655	b2240	-219	3.7	TTGTTTGATTTCGCGCATATTC
		-179	3.6	AAACGTGATTTCATGCGTCATT
		-129	4.6	ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2	STM2283	-220	3.6	ATGTTTGATTTCGCGCATAATC
		-180	4.2	AAACGTGATTTCGTGCGCCTTT
		-131	5.2	ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_00537	-221	3.6	TTGTTTGATTTCGCGCATAATC
		-181	4	AAACGTGATTTCGTGCGCTTTT
		-132	4.8	ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02646	-218	3.8	TTGTTTGATTTCGAGCATATTC
		-178	4.6	TTATGTGATTTCGTGCTCACAT
		-128	4.5	AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638	Ent638_2804	-201	3.6	TTGTTTGATTTCGAACATAATC
		-161	3.8	AAGCGTGATCTCATGCGCTTAT
		-111	4	ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946	EAM_0195	-240	3.7	AAACGCGATGCGGTTAACGATG
		-147	3.7	ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568	Spro_0199	-249	4.5	GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4166	-253	3.7	ATGTTTGATAAAGAGCAAAAAC
		-193	4.9	AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202	ETAE_3116	-200	3.7	ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320	PMI3591	-291	3.6	ATGTTTGATAATGAGCAAAAAC
		-232	5.4	ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu4119	-250	4.9	TATTGTGACAATTGTCACAATT

Position: -123 Score: 5 Sequence: TAATGTGAATTACAGCACATAT Locus tag: Salmonellaentericaenterica_010100004366
	Salmonellaentericaenterica_010100004366	-123	5	TAATGTGAATTACAGCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655	b2241	-165	4.6	AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2	STM2284	-163	5	TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00536	-163	4.7	TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02647	-165	4.3	TACTGTGAAACATCGCACAATT
		-115	3.8	ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638	Ent638_2805	-163	4.1	TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM	y0404	-231	3.6	AATTGTTACCTATTTTATGAAA
		-155	4.4	ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568	Spro_0200	-231	3.6	CGCTGTGATGGATGGCGCAATT
		-138	4.9	AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4165	-148	5.1	TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202	ETAE_3115	-247	4	TACTGTGAGAGATCGCTCATAT
		-142	4.8	TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320	PMI3592	-262	3.7	TACTGTGAAGTAATACTCAGTT
		-170	5.5	ATTTGTGATTAGTATCACATAT

Position: -144 Score: 3.7 Sequence: TTCTGTGAACACTCGCAAAAAA Locus tag: Salmonellaentericaenterica_010100004961
	Salmonellaentericaenterica_010100004961	-144	3.7	TTCTGTGAACACTCGCAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655	b4213	-118	3.8	AACTGTGATAGTGTCATCATTT
		-85	3.8	AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2	STM4403	-145	3.7	TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895	CKO_03616	-25	4.2	TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04607	-156	3.8	TTGTTTTATTTATATCGCATCA
		-87	3.7	TTTTCTGGCAAGATTCACATTT
		-35	4.2	TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638	Ent638_0392	-34	4	TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM	y0653	-148	3.6	AACTGTGAGCGTCTACGCGTTA
		-116	3.8	TTTTCTGCCAAACTTCACACTT
		-63	4.4	TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568	Spro_0453	-95	3.8	TTTTCTGCCACACTTCACAGTT

Position: -242 Score: 4.9 Sequence: AATCTTGATTTAGATCACACAA Locus tag: Salmonellaentericaenterica_010100008158
	Salmonellaentericaenterica_010100008158	-242	4.9	AATCTTGATTTAGATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655	b1241	-241	5	AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2	STM1749	-242	4.9	AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895	CKO_01318	-242	4.9	AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02199	-237	4.7	ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638	Ent638_2304	-253	4.1	TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946	EAM_1900	-223	3.9	ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM	y2023	-286	5.3	TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568	Spro_2704	-278	5.1	TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2326	-315	4.5	AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202	ETAE_1508	-265	5	TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320	PMI1486	-246	5.4	TATTGTGATGTAGATCACTTTA
		-187	3.7	AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu2496	-237	3.7	TATTTTTATTAGATTAAAAATT
		-138	4.6	TTATGTGATTAAGATCAATATA

Position: -256 Score: 4.8 Sequence: TTGTGTGATCTAAATCAAGATT Locus tag: Salmonellaentericaenterica_010100008163
	Salmonellaentericaenterica_010100008163	-256	4.8	TTGTGTGATCTAAATCAAGATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655	b1242	-257	5.1	TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2	STM1748	-256	4.8	TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895	CKO_01319	-167	5	TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02198	-261	4.8	TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638	Ent638_2303	-256	4	AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946	EAM_1899	-158	3.8	AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568	Spro_2703	-268	5.2	TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320	PMI1485	-290	5.3	TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1	plu2495	-295	4.9	TATATTGATCTTAATCACATAA

Position: -205 Score: 4.3 Sequence: AAAATTGACGCAGATCAAATAA Position: -155 Score: 4.5 Sequence: ATTTGTGATTTGGCTAGCCAAT Locus tag: Salmonellaentericaenterica_010100008508
	Salmonellaentericaenterica_010100008508	-205	4.3	AAAATTGACGCAGATCAAATAA
		-155	4.5	ATTTGTGATTTGGCTAGCCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uxuA
Ortholog function: Mannonate dehydratase (EC 4.2.1.8)
Escherichia coli str. K-12 substr. MG1655	b4322	-271	3.8	TGTTGCGATGAATGTCACATCC
		-186	4.5	TCTTGTGATGTGGTTAACCAAT
Salmonella typhimurium LT2	STM3135	-205	4.3	AAAATTGACACAGATCAAATAA
		-155	4.6	ATTTGTGATTTGGTTAGCCAAT
Citrobacter koseri ATCC BAA-895	CKO_00609	-115	3.9	GATTGTGAGCTGGATCAATCAA
Enterobacter sp. 638	Ent638_2767	-116	3.9	TTCTGTGAGTTGGATCAATCAA
Serratia proteamaculans 568	Spro_3238	-167	3.9	AACCGTGAAGTGGATCAACCAA
		-48	4.1	AATCTTGATCACCACCACAATA
Edwardsiella tarda EIB202	ETAE_2289	-188	4.2	AATCGTGAGGCGGATCAACCAA

Position: -310 Score: 4 Sequence: AGGTGTTAAATTGATCACGTTT Locus tag: Salmonellaentericaenterica_010100008648
	Salmonellaentericaenterica_010100008648	-310	4	AGGTGTTAAATTGATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyaA
Ortholog function: Adenylate cyclase (EC 4.6.1.1)
Salmonella typhimurium LT2	STM3939	-164	4	AGGTGTTAAATTGATCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_00148	-174	4	AGGTGTTAAATTGATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04305	-147	4	AGGTGTTAAATTGATCACGTTT

Position: -316 Score: 4.2 Sequence: AAACGTGATCAATTTAACACCT Locus tag: Salmonellaentericaenterica_010100008653
	Salmonellaentericaenterica_010100008653	-316	4.2	AAACGTGATCAATTTAACACCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hemC
Ortholog function: porphobilinogen deaminase
Escherichia coli str. K-12 substr. MG1655	b3805	-236	4.2	AAACGTGATCAATTTAACACCT
Salmonella typhimurium LT2	STM3938	-219	4.2	AAACGTGATCAATTTAACACCT
Citrobacter koseri ATCC BAA-895	CKO_00147	-220	4.2	AAACGTGATCAATTTAACACCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04304	-232	4.2	AAACGTGATCAATTTAACACCT
Enterobacter sp. 638	Ent638_3987	-211	4.2	AAACGTGATCAATCTAACACCT
Serratia proteamaculans 568	Spro_0178	-223	4.2	AAACGTGATCAATCTAACACCT
Edwardsiella tarda EIB202	ETAE_0118	-205	4.2	AAACGTGATCAATTTAACACCT

Position: 18 Score: 3.3 Sequence: CGTCGTGAAAGAGATCAAAGTC Locus tag: Salmonellaentericaenterica_010100009063
	Salmonellaentericaenterica_010100009063	18	3.3	CGTCGTGAAAGAGATCAAAGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceF
Ortholog function: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Escherichia coli str. K-12 substr. MG1655	b0115	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0153	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03258	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00119	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0661	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0748	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0768	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4010	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3788	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0660	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2045	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -118 Score: 3.9 Sequence: TTCTGTGATGAAGATCTATATT Locus tag: Salmonellaentericaenterica_010100009488
	Salmonellaentericaenterica_010100009488	-118	3.9	TTCTGTGATGAAGATCTATATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glk
Ortholog function: glucokinase
Escherichia coli str. K-12 substr. MG1655	b2388	-116	4.1	TTGTGTGACCCAGATCGATATT
Salmonella typhimurium LT2	STM2403	-116	3.9	TTCTGTGATGAAGATCTATATT
Citrobacter koseri ATCC BAA-895	CKO_00412	-116	4.5	TTATGTGATGCAGATCGATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02738	-117	4.4	AAATGTGACCTGTGTCGCTAAA
Enterobacter sp. 638	Ent638_2921	-116	3.8	TTCTGTGACGAAGATCGATTAT
Yersinia pestis KIM	y1505	-113	4.7	TTATGAGATGTCAGTCACAAAA
Serratia proteamaculans 568	Spro_3407	-116	4.8	TTTTGTGATCCGGATCGCTAAT

Position: -42 Score: 4.5 Sequence: AATTGTGACAATTGTCATATTA Locus tag: Salmonellaentericaenterica_010100009808
	Salmonellaentericaenterica_010100009808	-42	4.5	AATTGTGACAATTGTCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yegH
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655	b2063	-43	4.6	AATTGTGACATTTGTCATACAA
Salmonella typhimurium LT2	STM2119	-42	4.5	AATTGTGACAATTGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_00719	-42	4.5	AATTGTGACAACTGTCATATAA
Enterobacter sp. 638	Ent638_2677	-42	4.4	AAGTGTGACAAATGTCATATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1559	-193	3.9	ATTTGTTAATGTGATCACATGT

Position: -146 Score: 3.8 Sequence: TTTATTGATATTTATAATAAAT Position: -57 Score: 4.9 Sequence: AATCGTGATACAGCGCACAAAT Locus tag: Salmonellaentericaenterica_010100010263
	Salmonellaentericaenterica_010100010263	-146	3.8	TTTATTGATATTTATAATAAAT
		-57	4.9	AATCGTGATACAGCGCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yicG
Ortholog function: Putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b3646	-58	4.4	AATCGTGACAATGCGCACAAAT
Salmonella typhimurium LT2	STM3738	-210	3.7	TTAAATTATCTAAGTCAAAATA
		-147	3.8	TTTATTGATATTTATAATAAAT
		-58	4.9	AATCGTGATACAGCGCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_05103	-58	4.7	AATCGTGATATTACGCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03994	-55	4.9	AATCGTGATCCTGCGCACAAAT
Enterobacter sp. 638	Ent638_0094	-55	3.9	AATCGTGATATGTTCTGCAAAA
Edwardsiella tarda EIB202	ETAE_0032	-180	3.8	AAAACTAATCTATATCAAATAT

Position: -122 Score: 4.2 Sequence: ATTTGCGCGCTACGTCACATTT Position: -85 Score: 3.8 Sequence: TGTTGTGATTACTTTTGAAAAT Locus tag: Salmonellaentericaenterica_010100010383
	Salmonellaentericaenterica_010100010383	-122	4.2	ATTTGCGCGCTACGTCACATTT
		-85	3.8	TGTTGTGATTACTTTTGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ulaA
Ortholog function: Ascorbate-specific PTS system, EIIC component
Escherichia coli str. K-12 substr. MG1655	b4193	-124	3.8	ATTTGCGGGTCGCGTCACATTT
		-87	3.8	TGTTGTGATTACTTTTGAAAAT
Salmonella typhimurium LT2	STM4383.S	-122	3.9	ATTTGCGCGCTACGTCACAGTT
		-85	3.8	TGTTGTGATTACTTTTGAAAAT
Citrobacter koseri ATCC BAA-895	CKO_03643	-124	3.9	ATTTGCGTGGTGCGTCACAATT
		-87	3.8	TGTTGTGATTACTTTTGAAAAT

Position: -139 Score: 3.7 Sequence: TGTTGTGATCATCCTCTTTTTT Locus tag: Salmonellaentericaenterica_010100011083
	Salmonellaentericaenterica_010100011083	-139	3.7	TGTTGTGATCATCCTCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aphA
Ortholog function: acid phosphatase/phosphotransferase
Escherichia coli str. K-12 substr. MG1655	b4055	-130	3.6	CATCCTGCTTTTCATCACAAAA
		-57	4	TTTTGCAACAAATCTCACAATA
Salmonella typhimurium LT2	STM4249	-139	3.7	TGTTGTGATCATCCTCTTTTTT
Citrobacter koseri ATCC BAA-895	CKO_03845	-255	3.9	TATTGTGAATGCGTGTACAGAA
		-224	3.7	GTGTGTGTGGTTTATCACACAT
Enterobacter sp. 638	Ent638_0259	-57	3.8	TTTTTTGACCATTCGCTCAATT
Edwardsiella tarda EIB202	ETAE_3469	-150	5	TTTTGTGATGAATGTCACGTAT
		-98	3.7	AACATAGATCATGATCACATTA
Proteus mirabilis HI4320	PMI0729	-148	4.3	AAGTGTTAGATAGATCAAAAAA
		-87	4.3	TAACGTGCGCTATATCTCATTT
		-34	4.3	TTCTGTGATTAATATAAAAATT

Position: -287 Score: 4.7 Sequence: TTATGTGATGCATTTCATACTG Locus tag: Salmonellaentericaenterica_010100011318
	Salmonellaentericaenterica_010100011318	-287	4.7	TTATGTGATGCATTTCATACTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nanE
Ortholog function: N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9)
Salmonella typhimurium LT2	STM3337	-113	4.4	TTTAGTGAAGCAGATCGCACTA
Citrobacter koseri ATCC BAA-895	CKO_04626	-116	4.2	TTTAGTGAAGTAGATCGCACTC

Position: -299 Score: 3.5 Sequence: ATAGTTGATGTATATCAATTAC Position: -200 Score: 3.6 Sequence: AAGGTTGAGTTAGATCGCAGAA Locus tag: Salmonellaentericaenterica_010100011798
	Salmonellaentericaenterica_010100011798	-299	3.5	ATAGTTGATGTATATCAATTAC
		-200	3.6	AAGGTTGAGTTAGATCGCAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b2181	-158	3.7	AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02614	-204	3.8	AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946	EAM_2233	-177	3.6	AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM	y2914	-238	4.4	AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568	Spro_3250	-214	4.2	AAATGCGAGCTGAGTCGCAAAA
		-121	4.1	GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2740	-178	4	ATTCGTGATCAGTTTGGCATTA
		-101	3.8	TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2865	-185	4.1	AAATGAGAGATTGATCTCACTT
		-183	3.6	ATGAGAGATTGATCTCACTTTT
		-141	3.8	TAATGTAATACTATAAACACAA

Position: -145 Score: 4 Sequence: TTGTGCGAGTCAGCTCAAACTT Locus tag: Salmonellaentericaenterica_010100013844
	Salmonellaentericaenterica_010100013844	-145	4	TTGTGCGAGTCAGCTCAAACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Escherichia coli str. K-12 substr. MG1655	b3528	-143	4.1	TTGTGCGAGCCAGCTCAAACTT
Salmonella typhimurium LT2	STM3614	-145	4.1	TTGTGCGAGCCAGCTCAAACTT
Citrobacter koseri ATCC BAA-895	CKO_04970	-145	4	TTGTGCGAGCCAGCTCAAAGTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03878	-143	3.9	TTGTGCGAGTCAGCTCAAAGAT
Erwinia amylovora ATCC 49946	EAM_3380	-134	4.4	TGAAGTGATTCAGCTCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4362	-157	3.8	TGACGTGATTCAGCTCTTGTTT
Edwardsiella tarda EIB202	ETAE_3379	-155	3.6	TTATGCGTTTCAGCTCATAGAA
Photorhabdus luminescens subsp. laumondii TTO1	plu3205	-176	4.9	TTATGTGATCTATATCTTAAAA

Position: -105 Score: 4.4 Sequence: ATTTGTGATCGCACCCGCACTT Locus tag: Salmonellaentericaenterica_010100013869
	Salmonellaentericaenterica_010100013869	-105	4.4	ATTTGTGATCGCACCCGCACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655	b1205	-105	4.5	AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2	STM1782	-105	4.4	ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895	CKO_01260	-104	4.1	AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02241	-100	4.1	TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638	Ent638_2343	-119	3.7	TGTTGTGACGAGAGTCATTAAT
		-101	4	TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946	EAM_1581	-97	3.9	AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM	y2296	-145	3.9	AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568	Spro_1985	-117	4.2	ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2185	-275	3.6	TAGCGTGATTATGAGAACGCTA
		-117	3.8	ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1	plu2065	-189	4.1	AGTTGTGATCGTGTCCGCAATG

Position: -182 Score: 4.3 Sequence: GAACGTGATAGCGTTCACAGTT Position: -147 Score: 4 Sequence: CGGTGTGATGTCGTCCGCATTT Position: -62 Score: 3.8 Sequence: TAAGGTGAGGCCGATAACCCTT Locus tag: Salmonellaentericaenterica_010100014099
	Salmonellaentericaenterica_010100014099	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaS
Ortholog function: L-rhamnose operon regulatory protein RhaS
Escherichia coli str. K-12 substr. MG1655	b3905	-182	4.5	GAACGTGATGATGTTCACAATT
		-147	4.5	TGATGTGATGCTCACCGCATTT
Salmonella typhimurium LT2	STM4048	-182	4.3	GAACGTGATAGCGTTCACAGTT
		-147	4	CGGTGTGATGTCGTCCGCATTT
		-62	3.8	TAAGGTGAGGCCGATAACCCTT
Citrobacter koseri ATCC BAA-895	CKO_03099	-194	4.5	GAACGTGATAGCGTTCACAATT
		-34	4.3	ATTTCTGACATGTTTCTCATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04214	-204	3.8	GACCGTGAGGGACATCACAGTT
Enterobacter sp. 638	Ent638_4066	-194	4.2	GAACGTGAGGGAGTTCACAGTT
Yersinia pestis KIM	y0590	-214	3.9	GAAAGTGAAACAGCTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0441	-144	3.9	CGGTGTGATCCTTGCCACACTT

Position: -127 Score: 4.1 Sequence: AACTGTGAACGCTATCACGTTC Locus tag: Salmonellaentericaenterica_010100014104
	Salmonellaentericaenterica_010100014104	-127	4.1	AACTGTGAACGCTATCACGTTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaB
Ortholog function: rhamnulokinase
Escherichia coli str. K-12 substr. MG1655	b3904	-162	3.8	AAATGCGGTGAGCATCACATCA
		-127	4.4	AATTGTGAACATCATCACGTTC
Salmonella typhimurium LT2	STM4047	-247	3.9	AAGGGTTATCGGCCTCACCTTA
		-127	4.1	AACTGTGAACGCTATCACGTTC
Citrobacter koseri ATCC BAA-895	CKO_03100	-182	4.5	AATTGTGAACGCTATCACGTTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04213	-128	4.2	AACTGTGATGTCCCTCACGGTC
Enterobacter sp. 638	Ent638_4067	-129	4.2	AACTGTGAACTCCCTCACGTTC
Yersinia pestis KIM	y0587	-234	4.2	AACTGTGAGCTGTTTCACTTTC

Position: -29 Score: 4.2 Sequence: AAATTTGAACTTCCTCACGGTT Locus tag: Salmonellaentericaenterica_010100014644
	Salmonellaentericaenterica_010100014644	-29	4.2	AAATTTGAACTTCCTCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycaD
Ortholog function: Hypothetical MFS-type transporter protein ycaD
Escherichia coli str. K-12 substr. MG1655	b0898	-29	4.2	AAATTTGAACTTCCTCACGGTT
Salmonella typhimurium LT2	STM0968	-29	4.2	AAATTTGAACTTCCTCACGGTT
Citrobacter koseri ATCC BAA-895	CKO_02171	-29	4.2	AAATTTGAACTTCCTCACGGTT

Position: -78 Score: 3.7 Sequence: TAATTTATTACATGTCACACTT Locus tag: Salmonellaentericaenterica_010100014699
	Salmonellaentericaenterica_010100014699	-78	3.7	TAATTTATTACATGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: galE2
Ortholog function: UDP-galactose-4-epimerase
Escherichia coli str. K-12 substr. MG1655	b0759	-78	3.8	TAATTTATTCCATGTCACACTT
Salmonella typhimurium LT2	STM0776	-78	3.7	TAATTTATTACATGTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02376	-36	3.7	TAATATATTCCATGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00773	-78	3.7	TAACTTGTGCTATGTCACACTT
		-44	4.1	ATATGCTATCTTCCTCACAAAC
Yersinia pestis KIM	y3043	-163	3.7	TTATTTGTCTATGCTCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1389	-72	3.7	ATTCTCGCTGTAGATCACCTTT
Edwardsiella tarda EIB202	ETAE_2564	-195	3.7	TAGTGTAAGCGATACCACAAAC

Position: -131 Score: 3.8 Sequence: ATATTTGCACAGCGTCACACTT Locus tag: Salmonellaentericaenterica_010100014884
	Salmonellaentericaenterica_010100014884	-131	3.8	ATATTTGCACAGCGTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: araB
Ortholog function: L-ribulokinase
Escherichia coli str. K-12 substr. MG1655	b0063	-131	3.9	TTATTTGCACGGCGTCACACTT
Salmonella typhimurium LT2	STM0103	-131	3.8	ATATTTGCACAGCGTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_03319	-132	3.9	ATATTTGCACGGCGTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00062	-130	3.9	ATATTTGCACGGCGTCACACTT
Enterobacter sp. 638	Ent638_0610	-130	3.8	TTATTTGCACAGCGTCACACTT

Position: -134 Score: 3.8 Sequence: AAGCACGATATTGCTCACACTA Locus tag: Salmonellaentericaenterica_010100014974
	Salmonellaentericaenterica_010100014974	-134	3.8	AAGCACGATATTGCTCACACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: caiF
Ortholog function: transcriptional activator for carnitine metabolism
Escherichia coli str. K-12 substr. MG1655	b0034	-134	3.8	AAGCAGGATTTAGCTCACACTT
Salmonella typhimurium LT2	STM0068	-134	3.8	AAGCACGATATTGCTCACACTA
Citrobacter koseri ATCC BAA-895	CKO_03349	-144	3.8	AAGCACGATTTCGCTCACACTA

Position: -164 Score: 4 Sequence: AAATTTGAAGCAGTTAACGCTA Position: -104 Score: 3.6 Sequence: AGATGTTAGTTATCTATCAATT Locus tag: Salmonellaentericaenterica_010100015019
	Salmonellaentericaenterica_010100015019	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655	b0881	-164	4	AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2	STM0944	-164	4	AAATTTGAAGCAGTTAACGCTA
		-104	3.6	AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895	CKO_02199	-164	4	AAATTTGAAGCAGTTAACGCTA
		-135	4.2	TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00914	-167	4	AAATTTGAAGCAGTTAACGCTA
		-77	4.3	ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638	Ent638_1398	-161	3.9	ATTTTTGAAGCAGTTAACGCTA
		-132	3.8	GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946	EAM_1320	-161	4	AAATTTGAAGCAGTTAACGCTA
		-132	4.5	TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568	Spro_1673	-176	3.6	AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202	ETAE_2208	-164	3.8	AAGTTTGAGGCAGTTAACGCAA
		-144	3.6	AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320	PMI0689	-268	3.7	TGTCTTTATTTACTTAACATTA
		-148	4.1	AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1593	-170	4.3	AAGTTTGATATAGATAACGATA

Position: -181 Score: 4 Sequence: TAGCGTTAACTGCTTCAAATTT Locus tag: Salmonellaentericaenterica_010100015024
	Salmonellaentericaenterica_010100015024	-181	4	TAGCGTTAACTGCTTCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspD
Ortholog function: cold shock-like protein
Escherichia coli str. K-12 substr. MG1655	b0880	-180	4	TAGCGTTAACTGCTTCAAATTT
Salmonella typhimurium LT2	STM0943	-181	4	TAGCGTTAACTGCTTCAAATTT
Citrobacter koseri ATCC BAA-895	CKO_02200	-210	3.9	ATCCGCGACATCTGTCACATTA
		-181	4	TAGCGTTAACTGCTTCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00913	-270	4.2	AGAGGTTATGCTCATCACAAAT
		-180	4	TAGCGTTAACTGCTTCAAATTT
Enterobacter sp. 638	Ent638_1397	-209	3.8	ATCCGCGATATCTGTCACATTC
		-180	3.9	TAGCGTTAACTGCTTCAAAAAT
Serratia proteamaculans 568	Spro_1672	-205	4	TAGCGTTACCTGCTTCAAACTT
		-49	3.9	TTCAGTTATTCATCTCACCTAA
Proteus mirabilis HI4320	PMI0688	-163	3.8	AAGCGTTAGCTACATCAAAGTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1592	-194	4.6	TATCGTTATCTATATCAAACTT

Position: -82 Score: 5.6 Sequence: TAATGTGATTTACATCACACAT Locus tag: Salmonellaentericaenterica_010100017497
	Salmonellaentericaenterica_010100017497	-82	5.6	TAATGTGATTTACATCACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655	b2597	-81	4.8	TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895	CKO_03918	-40	5.2	TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02919	-88	5.6	AAATGTGATTTATATCACACAT
Enterobacter sp. 638	Ent638_3076	-81	5.4	ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946	EAM_2617	-83	5.2	AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568	Spro_0882	-83	4.8	ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3349	-86	4	AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202	ETAE_2834	-82	3.8	ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320	PMI0391	-82	4.6	AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1266	-87	5.1	AATAGTGATTTAGATCACCTTT

Position: -55 Score: 5.4 Sequence: TAATGTGATGTAAATCACCATT Position: -4 Score: 4.2 Sequence: AAATGTGTGCGTGATCTCATTA Locus tag: Salmonellaentericaenterica_010100017707
	Salmonellaentericaenterica_010100017707	-55	5.4	TAATGTGATGTAAATCACCATT
		-4	4.2	AAATGTGTGCGTGATCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycdZ
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1036	-52	4	AAATGTGTGCTCGATCTCATTC
		-50	3.7	ATGTGTGCTCGATCTCATTCAT
Citrobacter koseri ATCC BAA-895	CKO_02033	-40	3.9	AAATGTGTGCGTGATCTCATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01059	-52	4.1	TACTGTGTTTTAGATCGCATTC
Serratia proteamaculans 568	Spro_3290	-125	4.2	TTTTGTGACAAATTCCACATCT
		-96	3.6	TATCTTGTTTCTCATTACATAT
		-73	4.6	TTATGTGAAATACATCACATGA
Edwardsiella tarda EIB202	ETAE_2360	-124	4.3	AAGTGTGATTGATGTCACTTTG
		-72	3.6	CGGTGTGATGTCCATCAATGAA
Proteus mirabilis HI4320	PMI3124	-240	3.7	ATTAATAATATATATCAAACAA

Position: -164 Score: 4.2 Sequence: ACATGTGAGCGGGATCAAATTC Locus tag: Salmonellaentericaenterica_010100017912
	Salmonellaentericaenterica_010100017912	-164	4.2	ACATGTGAGCGGGATCAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: guaB
Ortholog function: inosine-5'-monophosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b2508	-165	4.2	ACATGTGAGCGAGATCAAATTC
Salmonella typhimurium LT2	STM2511	-164	4.2	ACATGTGAGCGGGATCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_00279	-165	4.2	ACATGTGAGCGGGATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02834	-162	4.3	ACATGTGAGCAAGATCAAACTT
Enterobacter sp. 638	Ent638_2999	-162	4.5	ACATGTGAGCAGGATCAAATTT
Erwinia amylovora ATCC 49946	EAM_2465	-174	4.6	ACATGTGATGAAGATCAAACTT
Yersinia pestis KIM	y1362	-89	4.8	ACATGTGACCTGGATCAAATTT
Serratia proteamaculans 568	Spro_3596	-174	4.8	ACATGTGACCCAGATCAAATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3209	-175	4.8	CATTGTGAGCCAGATCAAATTT
Edwardsiella tarda EIB202	ETAE_2787	-175	4.7	TCATGTGACCTAGATCAAACTT
Proteus mirabilis HI4320	PMI1546	-173	4.7	TCATGTGAGCCAGATCAAATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2713	-176	4.4	ACATGTGAGAAAGATCAAATTT

Position: -204 Score: 3.6 Sequence: AAATGTGAGAGAGTGCAACCTG Locus tag: Salmonellaentericaenterica_010100018017
	Salmonellaentericaenterica_010100018017	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655	b1015	-207	3.6	AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2	STM1125	-204	3.6	AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895	CKO_02041	-80	3.6	AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638	Ent638_1542	-249	3.7	TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568	Spro_2930	-211	3.9	AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4218	-130	3.7	TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320	PMI1615	-220	3.8	TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu1958	-243	4.4	AAATGTGATTCAGTAAACGTTT

Position: -103 Score: 3.5 Sequence: CCCTGTGATGTTTCTCACGCAG Position: -38 Score: 3.3 Sequence: ATTTGTGAGCATTTTTGAACTC Locus tag: Salmonellaentericaenterica_010100018077
	Salmonellaentericaenterica_010100018077	-103	3.5	CCCTGTGATGTTTCTCACGCAG
		-38	3.3	ATTTGTGAGCATTTTTGAACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: galS
Ortholog function: Mgl repressor and galactose ultrainduction factor GalS, HTH-type transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b2151	-146	3.5	GATAACGATCTGGATCACATTC
		-95	3.9	TGCTGTGACTCGATTCACGAAG
Salmonella typhimurium LT2	STM2191	-154	3.5	GATAACGATCTGGATCACATTC
		-103	3.5	CCCTGTGATGTTTCTCACGCAG
		-38	3.3	ATTTGTGAGCATTTTTGAACTC
Citrobacter koseri ATCC BAA-895	CKO_00640	-157	3.5	GATAACGATCTGGATCACATTC
		-106	3.4	CCCTGTGACCTTACTCACGTAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02589	-160	3.3	GATAACGATCTCGATCACAATC
		-109	3.4	CCGTGTGACCTCACTCACGCAG
		-33	3.6	TGACGTGCTGTAATTCTCTTAA
Enterobacter sp. 638	Ent638_2751	-160	3.4	GATAACGATCTGGATCACAATC
		-109	4.1	CTGTGTGAGCTTCTTCACGTAG
Erwinia amylovora ATCC 49946	EAM_2208	-110	3.4	GGCTGTGAGGTTTCTCACGTAG
Serratia proteamaculans 568	Spro_1562	-135	3.4	AATTGAGATCTGGCGCAGGTAG
		-84	3.5	TCCTGTGACGGGATTCACGCAG

Position: -92 Score: 4.5 Sequence: CTTTGTGATAAAACTCACTTTT Locus tag: Salmonellaentericaenterica_010100018497
	Salmonellaentericaenterica_010100018497	-92	4.5	CTTTGTGATAAAACTCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqeF
Ortholog function: Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Escherichia coli str. K-12 substr. MG1655	b2844	-91	4.6	CTTTGTGATAAAAATCACTTTT
Salmonella typhimurium LT2	STM3019	-92	4.5	CTTTGTGATAAAACTCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_04222	-92	4.6	CTTTGTGATAAAACTCACCATT

Position: -280 Score: 3.6 Sequence: TCTTGTTACAAGTTTAACACTT Locus tag: Salmonellaentericaenterica_010100019007
	Salmonellaentericaenterica_010100019007	-280	3.6	TCTTGTTACAAGTTTAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: csgD
Ortholog function: DNA-binding transcriptional activator in two-component regulatory system
Escherichia coli str. K-12 substr. MG1655	b1040	-201	3.9	TTTAGTTACATGTTTAACACTT
		-134	3.3	TAGTTTTATATTTTACCCATTT
Salmonella typhimurium LT2	STM1142	-202	3.4	TTTGGTTACAAGTTTAACACTT
Citrobacter koseri ATCC BAA-895	CKO_02029	-207	4.1	TTTTGTTACAAGTTTAACACTT

Position: -97 Score: 3.6 Sequence: TTCAGTGATATCCGTTAAAATT Locus tag: Salmonellaentericaenterica_010100019812
	Salmonellaentericaenterica_010100019812	-97	3.6	TTCAGTGATATCCGTTAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjtD
Ortholog function: RNA methyltransferase, TrmH family, group 1
Salmonella typhimurium LT2	STM4600	-97	3.6	TTCAGTGATATCAGTTAAAATT
Citrobacter koseri ATCC BAA-895	CKO_03386	-222	3.7	AGGTGTGATTCATTCTAAATTA
		-53	4.2	TATGTTGACATTGGTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04857	-94	4	TTTAGTGATTTTTGTTGCAAAT
Enterobacter sp. 638	Ent638_0563	-54	4.3	TATGTTGAGGTGGATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3892	-83	3.7	AATCGTGATCGATTACACGTCC

Position: -82 Score: 3.9 Sequence: ATTTGTTACATGAATCATTTAA Position: -60 Score: 3.6 Sequence: ATGTGTGAAGCGTAGCATTTTA Locus tag: Salmonellaentericaenterica_010100019827
	Salmonellaentericaenterica_010100019827	-82	3.9	ATTTGTTACATGAATCATTTAA
		-60	3.6	ATGTGTGAAGCGTAGCATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: elbB
Ortholog function: sigma cross-reacting protein 27A (SCRP-27A)
Escherichia coli str. K-12 substr. MG1655	b3209	-91	3.7	ATTTGTTACATGAATCAGTTAA
		-69	4	ATGTGTGATGCGTACCATTTTT
Salmonella typhimurium LT2	STM3327	-91	3.9	ATTTGTTACATGAATCATTTAA
		-69	3.6	ATGTGTGAAGCGTAGCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_04612	-92	3.7	TTTTGTTACATGAATCAGTTAA
		-70	3.6	ATGTGTGAAGCGCAGCATTTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03618	-93	3.6	ATTTGTTACATGAATCAGTAAA
		-71	3.8	ATATGTGAAGCATAGCGAGTTA
Serratia proteamaculans 568	Spro_4341	-72	3.7	ATGTGTGATGTAGATTAGTGTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0316	-72	3.7	ATGTGTGATGTAGATTAGTGTT
Proteus mirabilis HI4320	PMI3679	-174	4.1	TTTTTTGATTATCATTACATAG

Position: -143 Score: 4.3 Sequence: AATTGTGACAGAGTGCAAATTC Locus tag: Salmonellaentericaenterica_010100020752
	Salmonellaentericaenterica_010100020752	-143	4.3	AATTGTGACAGAGTGCAAATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: malT
Ortholog function: transcriptional regulator MalT
Escherichia coli str. K-12 substr. MG1655	b3418	-142	4.3	AATTGTGACACAGTGCAAATTC
Salmonella typhimurium LT2	STM3515	-143	4.3	AATTGTGACAGAGTGCAAATTC
Citrobacter koseri ATCC BAA-895	CKO_04840	-142	4.3	AATTGTGACAGAGTGCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03788	-142	4.4	ATTTGTGACATAGAGCAAATTC
Enterobacter sp. 638	Ent638_3831	-142	4.6	AATTGTGACAGAGTGCAAATTA
Yersinia pestis KIM	y3900	-202	4.6	AATTGTGATCCGTAGCAACTTA
Serratia proteamaculans 568	Spro_4637	-203	4	AAGTGTGATCAATAGCAATATA
Edwardsiella tarda EIB202	ETAE_3303	-212	3.8	AAATGTGATCAGCCGCAATTTC

Position: -53 Score: 3.7 Sequence: AAGTGTGAATCAACACACTCAT Locus tag: Salmonellaentericaenterica_010100021367
	Salmonellaentericaenterica_010100021367	-53	3.7	AAGTGTGAATCAACACACTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: talA
Ortholog function: Transaldolase (EC 2.2.1.2)
Escherichia coli str. K-12 substr. MG1655	b2464	-83	4	TTTTTTGATGCGTTTAGCGAAA
		-53	3.9	AAGTGTGAATTAACGCACTCAT
Salmonella typhimurium LT2	STM2473	-53	3.7	AAGTGTGAATCAACACACTCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02798	-80	3.7	TTTGGTTATGTACCTCATCAAT
Enterobacter sp. 638	Ent638_2959	-152	3.6	ATTTGTTATCAATTTATAACAA
		-83	3.9	TTTTGTTAAGTACGTCATGTAT

Position: -153 Score: 4.1 Sequence: AAACTTGATGCACATCAATTTT Locus tag: Salmonellaentericaenterica_010100022667
	Salmonellaentericaenterica_010100022667	-153	4.1	AAACTTGATGCACATCAATTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655	b1109	-154	3.9	AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2	STM1211	-154	4.1	AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01106	-152	4.1	AAACTTGATGCACATCAATTTT
Enterobacter sp. 638	Ent638_1624	-153	4	AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946	EAM_1473	-55	3.7	TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM	y1777	-152	3.8	AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568	Spro_1926	-153	4.3	AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1815	-153	4	TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202	ETAE_2070	-166	4.3	TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320	PMI0875	-157	4.6	TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu2821	-154	3.8	GAATTTGATGTTGTTCAATTTT

Position: -62 Score: 4.2 Sequence: AACTGTGATGTATATCGAAGTG Locus tag: Salmonellaentericaenterica_010100023444
	Salmonellaentericaenterica_010100023444	-62	4.2	AACTGTGATGTATATCGAAGTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655	b4381	-149	4.6	TTATTTGAACCAGATCGCATTA
		-96	4.5	AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2	STM4567	-133	4.9	TAATTTGATTCAGATCTCATTA
		-80	4.2	AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895	CKO_03410	-134	4.2	TTATTTGAAGTGGATCTCGTTA
		-81	4.2	AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04837	-158	5.2	ATTTGTGATTTTAATCACGTTA
		-105	3.7	AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638	Ent638_0541	-151	4.6	AAATTTGAAGTGGATCTCATTA
		-98	3.7	AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946	EAM_0615	-233	4.6	TGATGTGATAATTCTAACATTA
Yersinia pestis KIM	y3743	-169	3.7	TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568	Spro_0660	-262	4.6	ATTTGTGAACGATATCGCGTTA
		-240	5.5	TTTTGTGATGGTCTTCACATAT
		-188	3.8	TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0727	-282	4.4	AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320	PMI2416	-267	4.4	ATATGTGAGTTACTTCGCAACT
		-135	5.6	TTTTGTGATTCTGATCACAATT
		-83	4.5	TATTGTGACAGAAAGCACATCT

Position: -54 Score: 3.4 Sequence: TAATGGGACAGGTTCCAGATAA Locus tag: Salmonellaentericaenterica_010100023474
	Salmonellaentericaenterica_010100023474	-54	3.4	TAATGGGACAGGTTCCAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceE
Ortholog function: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Escherichia coli str. K-12 substr. MG1655	b0114	-156	3.7	AAACGTTATATATGTCAAGTTG
		-131	3.8	AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2	STM0152	-157	3.5	AAACATGATTTCTGTAAAATTG
		-120	3.2	TTTACTGATTTCAATCAAAACC
		-79	3	CTTATTAAGCTTTCTCACGAAA
		-54	3.4	TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895	CKO_03259	-180	3.2	ATTTGTGCATAGTTACATCTTT
		-157	3.1	AAACGTTATTTCTGTAATCTTG
		-148	3.3	TTCTGTAATCTTGTTAAAATGT
		-120	3.2	TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00118	-155	3.2	AAATGTTATTTCTGTAAGGTTG
		-118	3.2	TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638	Ent638_0660	-120	3.2	TTTACTGATTTCAATCAAAACC
		-77	3.1	TATTGTATTTTCTGGCGAAAAT
		-68	3	TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946	EAM_0747	-198	3.3	TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM	y0767	-151	4.2	AAATGTGCTGGGTTTCATGATT
		-139	3.3	TTTCATGATTTCGGTCAAGGTC
		-74	3.4	TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568	Spro_4011	-132	3.1	AAATGTGCGGGTAACCTGATTT
		-56	3.4	TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3789	-120	3.7	ATTGGTGATTTAGCTCAAGGTC
		-55	3.4	TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202	ETAE_0659	-143	3.2	TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320	PMI2046	-218	3.1	TGTTTTTAATCTTTTCTAATAA
		-199	4.4	TAATGCGATCTAGTTATCAAAT
		-181	4.2	AAATTTGATGAATTTATCAAAT
		-158	3	ATTTGTTAAAATTTGCAGGTTT
		-138	3.9	TTTTATGATTTCGCTCAACAAC
		-95	3.1	CTTTGTTACTTTATTATCCATT
		-89	3.1	TACTTTATTATCCATTACATTA

Position: -304 Score: 4.4 Sequence: TTTTGTGATGTATTTAAATAAT Position: -251 Score: 5.1 Sequence: TAATGTGATGTTTGTCACATCA Locus tag: Salmonellaentericaenterica_010100023529
	Salmonellaentericaenterica_010100023529	-304	4.4	TTTTGTGATGTATTTAAATAAT
		-251	5.1	TAATGTGATGTTTGTCACATCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Escherichia coli str. K-12 substr. MG1655	b3363	-204	4.2	TTTTGTGATCTGTTTAAATGTT
		-151	4.2	AGAGGTGATTTTGATCACGGAA
Salmonella typhimurium LT2	STM3472	-214	4.3	TTTTGTGATGCATTTAAATAAT
		-161	5.1	TAATGTGATGTTTGTCACATCA
Citrobacter koseri ATCC BAA-895	CKO_04785	-215	3.7	TTTAGTGATGTATTTAAATGTT
		-162	5.2	TAACGTGACATTGATCACATTA

Position: -137 Score: 5 Sequence: TGATGTGACAAACATCACATTA Locus tag: Salmonellaentericaenterica_010100023534
	Salmonellaentericaenterica_010100023534	-137	5	TGATGTGACAAACATCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfC
Ortholog function: Predicted purine nucleoside transporter, MFS superfamily
Salmonella typhimurium LT2	STM3473	-137	5	TGATGTGACAAACATCACATTA
		-84	3.8	ATTATTTAAATGCATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03750	-140	5.3	AAGCGTGATGCAGATCACATTA
		-109	3.7	AAAGATAACCCATTTCACAATA
Enterobacter sp. 638	Ent638_3791	-206	4.8	AAAAGTGACTTAGATCACATTG
Serratia proteamaculans 568	Spro_2681	-82	4.3	AATTGTGAACCCGATCACTTCA

Position: -166 Score: 5.4 Sequence: AAAAGTGATTTAGATCACATAA Locus tag: Salmonellaentericaenterica_010100023729
	Salmonellaentericaenterica_010100023729	-166	5.4	AAAAGTGATTTAGATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhcR
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b3242	-167	5.4	AAAAGTGATTTAGATCACATAA
Salmonella typhimurium LT2	STM3366	-166	5.4	AAAAGTGATTTAGATCACATAA
Citrobacter koseri ATCC BAA-895	CKO_04650	-168	5.4	AAAAGTGATTTAGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03651	-116	5.2	AAAAGTGATTTAGATCACACAT
		-63	3.7	TATTGTTAGCTACATAATAAAC
Enterobacter sp. 638	Ent638_3679	-165	5.4	AAAAGTGATTTAGATCACATAT
Yersinia pestis KIM	y0179	-269	5.2	AAAAGTGATTTAGATCACACAT
Serratia proteamaculans 568	Spro_4392	-293	5.1	AAAAGTGATTTAGATCACAGAT
		-89	3.8	ATTTGTGGTGCGTGTCAGCTAA

Position: -55 Score: 5.3 Sequence: TTATGTGATCTAAATCACTTTT Locus tag: Salmonellaentericaenterica_010100023734
	Salmonellaentericaenterica_010100023734	-55	5.3	TTATGTGATCTAAATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aaeR
Ortholog function: LysR-family transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b3243	-37	5.3	TTATGTGATCTAAATCACTTTT
Salmonella typhimurium LT2	STM3367	-37	5.3	TTATGTGATCTAAATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_04651	-37	5.3	ATATGTGATCTAAATCACTTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03652	-55	5.1	ATGTGTGATCTAAATCACTTTT
Enterobacter sp. 638	Ent638_3680	-37	5.3	ATATGTGATCTAAATCACTTTT
Erwinia amylovora ATCC 49946	EAM_3128	-37	5.3	AAATGTGATCTAAATCACTTTT
Yersinia pestis KIM	y0180	-55	5.1	ATGTGTGATCTAAATCACTTTT
Serratia proteamaculans 568	Spro_4393	-37	4.9	ATCTGTGATCTAAATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0276	-37	5.1	TAGTGTGATCTAAATCACTTTT
Edwardsiella tarda EIB202	ETAE_3129	-131	4.5	ATCTGTGACGCAAATCACTTTT

Position: -94 Score: 4.5 Sequence: AAATGAGAAGCAGGTCACAAAA Locus tag: Salmonellaentericaenterica_010100023789
	Salmonellaentericaenterica_010100023789	-94	4.5	AAATGAGAAGCAGGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sotB
Ortholog function: Probable sugar efflux transporter
Escherichia coli str. K-12 substr. MG1655	b1528	-94	4.9	AAACGCGATCCAGATCACAAAT
Salmonella typhimurium LT2	STM1522	-94	4.5	AAATGAGAAGCAGGTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_01548	-94	4.8	TAATGAGACATACATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01628	-94	4.8	AAATGAGACGCAGATCACAAAA
Enterobacter sp. 638	Ent638_2000	-95	4.9	TTTTGAGATCTGCGTCACATAA

Position: -76 Score: 3.4 Sequence: GAATTTGATTTACATCAATAAG Locus tag: Salmonellaentericaenterica_010100024979
	Salmonellaentericaenterica_010100024979	-76	3.4	GAATTTGATTTACATCAATAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: nirB
Ortholog function: nitrite reductase (NAD(P)H) subunit
Escherichia coli str. K-12 substr. MG1655	b3365	-124	3.2	AAAATTTATACAAATCAGCAAT
		-76	3.4	GAATTTGATTTACATCAATAAG
Salmonella typhimurium LT2	STM3474	-76	3.4	GAATTTGATTTACATCAATAAG
Citrobacter koseri ATCC BAA-895	CKO_04789	-76	3.4	GAATTTGATTTACATCAATAAG
Enterobacter sp. 638	Ent638_3793	-76	3.3	GTATTTGATTTGCATCAATAAG
Yersinia pestis KIM	y3945	-75	3.7	CAAATTGATTTACATCAAGAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4079	-186	4.2	AAGCGTGCTATAGATCTCACTT
Proteus mirabilis HI4320	PMI1479	-129	3.5	TTTTGTGCACTTTATTAACAAT

Position: -74 Score: 3.6 Sequence: AAAAGTGACCTGACGCAATAAT Locus tag: Salmonellaentericaenterica_010100025014
	Salmonellaentericaenterica_010100025014	-74	3.6	AAAAGTGACCTGACGCAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655	b1127	-73	3.6	AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2	STM1227	-73	3.6	AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895	CKO_01926	-73	3.6	AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638	Ent638_1640	-31	3.6	AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM	y1791	-27	3.7	ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568	Spro_2009	-188	4.1	CGTCGTGAAGAAGATCACACAT

Position: -236 Score: 4.1 Sequence: TAACATGACCTGTGTCTCATAA Locus tag: Salmonellaentericaenterica_010100025539
	Salmonellaentericaenterica_010100025539	-236	4.1	TAACATGACCTGTGTCTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntT
Ortholog function: gluconate transporter
Escherichia coli str. K-12 substr. MG1655	b3415	-236	4.3	TAATATGACCAACCTCTCATAA
Salmonella typhimurium LT2	STM3512	-236	4.1	TAACATGACCTGTGTCTCATAA
		-178	3.8	ATATGTTACCCGTATCATTCTT
		-37	3.2	TGACGTTACCCATAACAAAGTA
Citrobacter koseri ATCC BAA-895	CKO_04836	-236	4.2	TAACATGACCTGCCTCTCATAA
		-178	3.8	ATATGTTACCCGTATCATTCAT

Position: -107 Score: 3.6 Sequence: TTTCTTGCTTACCGTCACATTG Position: -55 Score: 3.6 Sequence: TATTCTGATAAAACGCAAATAC Locus tag: Salmonellaentericaenterica_010100026484
	Salmonellaentericaenterica_010100026484	-107	3.6	TTTCTTGCTTACCGTCACATTG
		-55	3.6	TATTCTGATAAAACGCAAATAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655	b1761	-106	3.5	TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2	STM1299	-107	3.6	TTTCTTGCTTACCGTCACATTG
		-55	3.6	TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895	CKO_01789	-107	3.4	TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638	Ent638_1685	-110	3.3	AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0051	-234	3.6	TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320	PMI3008	-195	3.4	AATCCTGATTTTATTAGCCTTT
		-88	3.5	AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu0122	-92	3.5	AAACACAACTTACCTCACATTT

Position: -184 Score: 4.5 Sequence: AAGTGTTATTTTGATCTCAAAA Locus tag: Salmonellaentericaenterica_010100029503
	Salmonellaentericaenterica_010100029503	-184	4.5	AAGTGTTATTTTGATCTCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: mltB
Ortholog function: membrane-bound lytic murein transglycosylase B
Escherichia coli str. K-12 substr. MG1655	b2701	-184	4.6	AAGTGTTATTTTGATCGCAAAA
Salmonella typhimurium LT2	STM2831	-182	4.4	AAGTGTTATTGTGATCGCAAAA
Citrobacter koseri ATCC BAA-895	CKO_04055	-184	4.5	AAGTGTTATTTTGATCTCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03036	-296	4.3	AAGTGTTAAATGGATCGCAAAA
Serratia proteamaculans 568	Spro_3399	-136	4.1	TTCTGTGCTGCCCGTCACGTTT

Position: -93 Score: 4.3 Sequence: TTTTGAGATCAAAATAACACTT Locus tag: Salmonellaentericaenterica_010100029508
	Salmonellaentericaenterica_010100029508	-93	4.3	TTTTGAGATCAAAATAACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: srlA
Ortholog function: PTS system, glucitol/sorbitol-specific IIC component (EC 2.7.1.69)
Escherichia coli str. K-12 substr. MG1655	b2702	-93	4.4	TTTTGCGATCAAAATAACACTT
Salmonella typhimurium LT2	STM2832	-93	4.3	TTTTGCGATCACAATAACACTT
Citrobacter koseri ATCC BAA-895	CKO_04056	-93	4.3	TTTTGAGATCAAAATAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03037	-92	4.6	TTTTGCGATCCATTTAACACTT
Serratia proteamaculans 568	Spro_3569	-110	4.9	AATTGTGATCTATTTAAAACAA

Position: -21 Score: 3.7 Sequence: ATACGTGAAAGGAACAACAAAA Locus tag: Salmonellaentericaenterica_010100033412
	Salmonellaentericaenterica_010100033412	-21	3.7	ATACGTGAAAGGAACAACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655	b2463	-257	3.9	ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2	STM2472	-240	3.8	ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638	Ent638_2958	-231	4.1	ATACATGACGTACTTAACAAAA
Yersinia pestis KIM	y1449	-92	3.7	GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568	Spro_3472	-209	3.6	CTTTGTTATCAAACTCACTATC
		-90	4.1	GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1	plu2719	-74	4	TGTTATGATTTGACACACAGTA

Position: -171 Score: 4.7 Sequence: TTTTGTGATTATAATCACTAAA Locus tag: Salmonellaentericaenterica_010100033752
	Salmonellaentericaenterica_010100033752	-171	4.7	TTTTGTGATTATAATCACTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nagB
Ortholog function: Glucosamine-6-phosphate deaminase (EC 3.5.99.6)
Escherichia coli str. K-12 substr. MG1655	b0678	-212	4.3	AAATTTAATTCGTATCGCAAAT
		-178	4.6	TTTTGTGAGTTTTGTCACCAAA
Salmonella typhimurium LT2	STM0684	-205	3.7	AAAATTAATTCGCCTCGCAAAT
		-171	4.7	TTTTGTGATTATAATCACTAAA
Citrobacter koseri ATCC BAA-895	CKO_02486	-218	3.8	AAAATTAATTCGTATCGCAAAT
		-184	5.2	TTTTGTGATTTGAATCACCAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00699	-217	3.8	AAAATTAATTCGTATCGCAAAT
		-183	5	TTTTGTGATAATTATCACCAAA
Enterobacter sp. 638	Ent638_1193	-218	3.8	AAAATTAATTCGTATCGCAAAT
		-184	4.6	TTTTGTGAGTTTTGTCACCAAA
Erwinia amylovora ATCC 49946	EAM_1147	-195	4.9	ATATGTGATTAAAGTCACCTTA
Yersinia pestis KIM	y1202	-214	5.1	TTTTGTGATAAATATCACCAAA
Serratia proteamaculans 568	Spro_1227	-194	5.3	TTTTGTGATTTACATCACCAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1326	-180	5	TTATGTGATAAAAATCACCAAA
Edwardsiella tarda EIB202	ETAE_2617	-190	5	ATTTGTGATAACTATCACCAAT
Proteus mirabilis HI4320	PMI0454	-217	4.9	ATTTGTGATTAAAGTCACCTAT

Position: -124 Score: 4.5 Sequence: TGCTGTGATGAATTTCGCATAA Position: 0 Score: 4 Sequence: ATGTTTGATAAACGTCACCGTA Locus tag: Salmonellaentericaenterica_010100035334
	Salmonellaentericaenterica_010100035334	-124	4.5	TGCTGTGATGAATTTCGCATAA
		0	4	ATGTTTGATAAACGTCACCGTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylR
Ortholog function: Xylose activator XylR (AraC family)
Escherichia coli str. K-12 substr. MG1655	b3569	-253	4.2	AAGTGTGCGCTCGCTCGCAAAA
		-163	3.7	AAGTAAGATCTCGGTCATAAAT
Salmonella typhimurium LT2	STM3662	-251	4.8	AAATGTGCTCTGGCTCTCAAAA
		-124	4.5	TGCTGTGATGAATTTCGCATAA
Citrobacter koseri ATCC BAA-895	CKO_05026	-254	4.1	AAGTGTGCGCCGCCTCGCAAAA
		-162	3.8	AAGTACGATCTCGGTCATAATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03933	-234	3.8	AAATACGATCGCCGTCATAATT
Enterobacter sp. 638	Ent638_0152	-264	3.9	AAACGTGCGCTGGCTCCCAAAA
Yersinia pestis KIM	y4053	-264	4.8	AATTGTGGTGTAGATCTCATAA
		-160	4.2	AAACATGATCGTTATCATAAAA
Serratia proteamaculans 568	Spro_0102	-259	4.4	AAATGTGCGACAGATCTCATAA
		-166	3.7	AAGCATGACCGCCATCATAAAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0101	-272	4.5	AAATATGACCCGCATCAAAAAA
Proteus mirabilis HI4320	PMI1276	-93	4.9	TTGTGTGATAGTAATCACATAG

Position: -189 Score: 4.3 Sequence: ATGTCTGACGGAGTTCACACTT Locus tag: Salmonellaentericaenterica_010100035839
	Salmonellaentericaenterica_010100035839	-189	4.3	ATGTCTGACGGAGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompA
Ortholog function: outer membrane protein A
Escherichia coli str. K-12 substr. MG1655	b0957	-188	4	ATGCCTGACGGAGTTCACACTT
Salmonella typhimurium LT2	STM1070	-188	4.3	ATGTCTGACGGAGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_02111	-164	4	ATGCCTGACGGAGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00986	-185	3.9	ATGCCTGACAGAGTTCACACTT
Enterobacter sp. 638	Ent638_1469	-189	4	ATGCCTGACGGAGTTCACACTT
Serratia proteamaculans 568	Spro_1754	-195	3.8	TTTTTAGAGCTTTATCACATCA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1751	-200	3.9	TCTTATGACACAAATCACATCA
Edwardsiella tarda EIB202	ETAE_1267	-196	3.7	TTTGGTGAGCATAATCACATCG

Position: -238 Score: 4.8 Sequence: AAATGTAATACCCATCACACTT Position: -171 Score: 3.8 Sequence: TGCCGCGATAGATCTCACACTT Position: -120 Score: 4.1 Sequence: TTCTGTGGCGCAGATCACCTAT Locus tag: Salmonellaentericaenterica_010100036239
	Salmonellaentericaenterica_010100036239	-238	4.8	AAATGTAATACCCATCACACTT
		-171	3.8	TGCCGCGATAGATCTCACACTT
		-120	4.1	TTCTGTGGCGCAGATCACCTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_03591
Ortholog function: hypothetical protein
Salmonella typhimurium LT2	STM4440	-229	4.5	AACTGTAATACCCATCACACTT
		-162	3.8	TGCCGCGATAGATCTCACACTT
		-111	4.1	TTCTGTGGCGCAGATCACCTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04633	-172	4.3	TGTTGTGATACATCTCACGCCA
		-121	4.2	ATATGTGGAGTCGATCACCTAA
Enterobacter sp. 638	Ent638_0424	-265	3.8	AAACCTTATCCGCGTCACACTT
		-189	4.6	TAGCGTGATATTCATCACGCAA
Erwinia amylovora ATCC 49946	EAM_0469	-156	3.8	TGATGTGAGTTGTCTCGCTTTG

Position: -237 Score: 4.9 Sequence: TATGGTGACGTGCTTCACATAT Locus tag: Salmonellaentericaenterica_010100036564
	Salmonellaentericaenterica_010100036564	-237	4.9	TATGGTGACGTGCTTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycgB
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1188	-235	4.4	TATGGTGAGCTGGCTCACATCT
Salmonella typhimurium LT2	STM1804.S	-243	4.9	TATGGTGACGTGCTTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02310	-174	4	TATGGTGACTTAACTCACAGCA
Enterobacter sp. 638	Ent638_2364	-236	4.2	TATGGTGACTTACCTCACACCT

Position: -56 Score: 3.6 Sequence: TTGTGTAATACTTGTAACGCTA Locus tag: Salmonellaentericaenterica_010100036661
	Salmonellaentericaenterica_010100036661	-56	3.6	TTGTGTAATACTTGTAACGCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b1677	-56	3.6	TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2	STM1377	-56	3.6	TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895	CKO_01710	-56	3.6	TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02134	-56	3.6	TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638	Ent638_1767	-56	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946	EAM_1656	-56	3.6	TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568	Spro_2186	-55	3.6	TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1866	-56	3.6	TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202	ETAE_1852	-55	3.6	TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320	PMI1409	-200	4.4	TTTTGTGAAATAACACGCATTT

Position: -141 Score: 3.8 Sequence: GAATGTGAACTAAATCACTTCA Locus tag: Salmonellaentericaenterica_010100038495
	Salmonellaentericaenterica_010100038495	-141	3.8	GAATGTGAACTAAATCACTTCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rnk
Ortholog function: Regulator of nucleoside diphosphate kinase
Escherichia coli str. K-12 substr. MG1655	b0610	-140	3.8	GAATGTGACGCAAATCACTTCA
Salmonella typhimurium LT2	STM0616	-141	3.8	GAATGTGAACTAAATCACTTCA
Citrobacter koseri ATCC BAA-895	CKO_02549	-141	3.9	GAATGTGAGCTAAATCACTTCA
Enterobacter sp. 638	Ent638_1148	-187	4.1	AAATCTGAGAACGATCACGTTT
		-140	3.8	GAATGTGACATTCATCACTTCA
Serratia proteamaculans 568	Spro_4382	-170	3.7	CTTCGTGATCGGGATCTCTTTC
		-67	3.8	TTTTGTGCTGTTTTTCCGAATT
Edwardsiella tarda EIB202	ETAE_0492	-145	4.4	ATTTGTGAGCCAGCTCTCTTTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4046	-127	3.7	GTTCGTGATCATGATCTCTTTA

Position: -114 Score: 4.3 Sequence: TAACGCGATATTTATCACTTTT Locus tag: Salmonellaentericaenterica_010100038705
	Salmonellaentericaenterica_010100038705	-114	4.3	TAACGCGATATTTATCACTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cspE
Ortholog function: cold shock protein E
Escherichia coli str. K-12 substr. MG1655	b0623	-114	4	TAACGCGACTTTTATCACTTTT
Salmonella typhimurium LT2	STM0629	-114	4.3	TAACGCGATATTTATCACTTTT
Citrobacter koseri ATCC BAA-895	CKO_02534	-21	4.3	TAACGCGATATTTATCACTTTT
Enterobacter sp. 638	Ent638_1159	-114	3.8	TAACGCGACTTTTGTCACTTTT
Erwinia amylovora ATCC 49946	EAM_1116	-113	3.6	AAAAACGATATTTATCACTTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1294	-113	3.9	TTTAGCGACTTTTATCACTTTT

Position: -262 Score: 4.6 Sequence: ATGTGTGATCTGGTGCACGCTT Position: -211 Score: 4.1 Sequence: TTTTGTACGATCGTTCACACTT Locus tag: Salmonellaentericaenterica_010100040396
	Salmonellaentericaenterica_010100040396	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655	b3739	-263	4.8	ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2	STM3872	-262	4.6	ATGTGTGATCTGGTGCACGCTT
		-211	4.1	TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_00079	-262	4.7	ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04144	-262	4.7	TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638	Ent638_4125	-261	4.8	TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946	EAM_3481	-264	4.4	ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM	y4142	-263	5.4	TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568	Spro_0001	-265	4.4	TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA4519	-254	5	TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202	ETAE_3526	-297	3.7	AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320	PMI3057	-259	5	TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1	plu0047	-265	5.7	TTATGTGATTTAAATCACATTT

Position: -97 Score: 4.7 Sequence: AAAGGTGATGGATATCACAAAC Locus tag: Salmonellaentericaenterica_010100040431
	Salmonellaentericaenterica_010100040431	-97	4.7	AAAGGTGATGGATATCACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeaQ
Ortholog function: Transglycosylase associated protein
Escherichia coli str. K-12 substr. MG1655	b1795	-98	4.2	CTCCGTGATGCTCGTCACAAAT
Citrobacter koseri ATCC BAA-895	CKO_01818	-97	4.9	AAAAGTGACATTTATCACAAAT
Enterobacter sp. 638	Ent638_1658	-245	3.7	CAATGTGAGCAATGTCGTACTA
		-101	4.8	CACTGTGATACCTATCACAAAT

Position: -71 Score: 3.9 Sequence: TTTTGTGGTATGGTTTAAACAT Locus tag: Salmonellaentericaenterica_010100040981
	Salmonellaentericaenterica_010100040981	-71	3.9	TTTTGTGGTATGGTTTAAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroF
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Salmonella typhimurium LT2	STM2670	-71	3.9	TTTTGTGGTATGGTTTAAACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02923	-159	3.8	TATTGTTATACGCATCGCGCCA
Edwardsiella tarda EIB202	ETAE_2837	-117	3.8	ATGTACGATATTGTTTACATAT
Proteus mirabilis HI4320	PMI0387	-214	4.5	TTATTTTATCTTAGTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu1262	-262	3.6	TGTTTTGATATTGATTTTATTT

Position: -100 Score: 3.8 Sequence: AATTGAGACTTCCTTCAAACAC Locus tag: Salmonellaentericaenterica_010100041146
	Salmonellaentericaenterica_010100041146	-100	3.8	AATTGAGACTTCCTTCAAACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655	b0479	-65	3.7	TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2	STM0493	-100	3.8	AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895	CKO_02670	-102	3.8	AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00460	-197	3.8	AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638	Ent638_0958	-92	4	AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568	Spro_1146	-100	4.7	TTTTGCGATGTGCGTCAAATTA

Position: -21 Score: 3.8 Sequence: CTGTGTAATGGAAATCTCACTA Locus tag: Salmonellaentericaenterica_010100041451
	Salmonellaentericaenterica_010100041451	-21	3.8	CTGTGTAATGGAAATCTCACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadR
Ortholog function: fatty acid metabolism regulator
Escherichia coli str. K-12 substr. MG1655	b1187	-21	3.9	CTGTGTTATGGAAATCTCACTA
Salmonella typhimurium LT2	STM1805	-21	3.8	CTGTGTAATGGAAATCTCACTA
Enterobacter sp. 638	Ent638_2365	-21	3.8	CTGTGTAATGGAAATCTCACTA
Yersinia pestis KIM	y2177	-113	3.8	CTTTATGACTGCTTTCACCATT
Proteus mirabilis HI4320	PMI1510	-111	4.4	TTTTATGATGCCATTCACTATT
		-84	3.8	ATGGTTGAGCTATATCAAAATT

Position: -56 Score: 4.1 Sequence: TTTTTTGAGCGGAATCGCGTTA Locus tag: Salmonellaentericaenterica_010100041691
	Salmonellaentericaenterica_010100041691	-56	4.1	TTTTTTGAGCGGAATCGCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yidA
Ortholog function: Phosphatase YidA
Escherichia coli str. K-12 substr. MG1655	b3697	-56	4.1	ATTTTTGAGCGGAATCGCGTTA
Salmonella typhimurium LT2	STM3831	-56	4.1	TTTTTTGAGCGGAATCGCGTTA
Citrobacter koseri ATCC BAA-895	CKO_00044	-56	4.1	TTTTTTGAGCGGAATCGCGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04101	-56	4.1	TTTTTTGAGCGGAATCGCGTTA

Position: -99 Score: 4.4 Sequence: TACTTTGAGCCGGTTCACACTT Locus tag: Salmonellaentericaenterica_010100042723
	Salmonellaentericaenterica_010100042723	-99	4.4	TACTTTGAGCCGGTTCACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2	STM3280.S	-154	3.9	CTTTTTGATTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895	CKO_04559	-103	3.9	CTTTTTGATTGCCATCACCTTC
		-48	4.4	TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03570	-154	3.8	TTTTTTGCTTGCCATCACCTTC
		-99	4.4	TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638	Ent638_3599	-154	4.1	TCTTATGATTGCCATCACCTTA
		-99	4.4	TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946	EAM_3065	-99	4.8	TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM	y0696	-96	4.8	TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568	Spro_0495	-96	4.8	TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0718	-96	4.4	CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202	ETAE_0411	-96	4.8	TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320	PMI3424	-80	5	TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1	plu4523	-95	5	TAATTTGAGCCAGTTCACATTT

Position: -290 Score: 3.5 Sequence: TTGTGCGACATACCGCACGGTT Position: -238 Score: 3.6 Sequence: TTATGTAACGTAATAAAAATTA Locus tag: Salmonellaentericaenterica_010100042803
	Salmonellaentericaenterica_010100042803	-290	3.5	TTGTGCGACATACCGCACGGTT
		-238	3.6	TTATGTAACGTAATAAAAATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655	b3398	-288	3.6	TTGTGCGATATCGGACACGCTT
		-123	3.8	TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2	STM3495	-238	3.6	TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895	CKO_04821	-290	3.9	TTGTGCGATATACAGCACGGTT
		-238	3.7	TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03769	-282	3.8	TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638	Ent638_3811	-287	3.7	TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM	y3922	-186	3.7	TATTGTGACTGCGTTAGCTTTG

Position: -54 Score: 3.5 Sequence: AACCGTGCGGTATGTCGCACAA Locus tag: Salmonellaentericaenterica_010100042808
	Salmonellaentericaenterica_010100042808	-54	3.5	AACCGTGCGGTATGTCGCACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655	b3397	-53	3.7	AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895	CKO_04820	-54	4.1	AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03768	-54	4	AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638	Ent638_3810	-55	3.6	AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM	y3923	-247	4.5	CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568	Spro_4612	-135	4.4	CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202	ETAE_3268	-116	3.6	AAATATGAGCATCTGCGCACAA

Position: -2 Score: 3.5 Sequence: AAATGTTATTTAGTATACAGCT Locus tag: Salmonellaentericaenterica_010100043218
	Salmonellaentericaenterica_010100043218	-2	3.5	AAATGTTATTTAGTATACAGCT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Escherichia coli str. K-12 substr. MG1655	b4123	-53	3.5	GACTGTGATCTATTCAGCAAAA
Salmonella typhimurium LT2	STM4301	-53	3.5	GGCTGTGATCCATTTATCAAAA
Citrobacter koseri ATCC BAA-895	CKO_03748	-52	3.9	GACTGTGATCTATTTATCAAAA
Enterobacter sp. 638	Ent638_2479	-81	3.3	AAATCTGATCTGGCTCCCAGCC
Serratia proteamaculans 568	Spro_3863	-77	3.6	GTTTGTGATCGCTATCCCTCAA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA1533	-296	3.5	TATTGCGAGCGAGATCTTTTAT
		-247	3.5	TTAATAGATTTAGATCAAGAAA
Edwardsiella tarda EIB202	ETAE_2844	-194	3.6	ATACTTTATTCAGATCAATTTT
Proteus mirabilis HI4320	PMI0389	-138	3.3	AACTATAACAACGATCAAAAAA

Position: -222 Score: 3.3 Sequence: TCGCGTGATAATTTTCATGCTT Position: -178 Score: 4.2 Sequence: TCATGTGACCCATATCTCCTTA Position: -117 Score: 4.2 Sequence: TATTGTGATTTTGCGCATTAAA Locus tag: Salmonellaentericaenterica_010100045160
	Salmonellaentericaenterica_010100045160	-222	3.3	TCGCGTGATAATTTTCATGCTT
		-178	4.2	TCATGTGACCCATATCTCCTTA
		-117	4.2	TATTGTGATTTTGCGCATTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glgS
Ortholog function: glycogen synthesis protein GlgS
Escherichia coli str. K-12 substr. MG1655	b3049	-225	3.4	AATAGTTTCCTTGCTTACATTT
		-203	3.4	ATCTGTGTTAATAATAACACAG
		-124	3.8	AAGTGTGATCGGGGACAATATA
Salmonella typhimurium LT2	STM3197	-222	3.3	TCGCGTGATAATTTTCATGCTT
		-178	4.2	TCATGTGACCCATATCTCCTTA
		-117	4.2	TATTGTGATTTTGCGCATTAAA
Citrobacter koseri ATCC BAA-895	CKO_04437	-118	3.4	AAGTGTGATGTCAGGCAACTGA

Position: -66 Score: 3.9 Sequence: TAATGTATTTTTATTCATAATT Locus tag: Salmonellaentericaenterica_010100045355
	Salmonellaentericaenterica_010100045355	-66	3.9	TAATGTATTTTTATTCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655	b3957	-66	3.7	TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2	STM4120	-66	3.9	TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895	CKO_03037	-27	4.3	TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04246	-27	4	TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638	Ent638_4029	-66	4.2	TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946	EAM_0137	-66	3.8	TATTGTATTTTTATTCACTATT
Yersinia pestis KIM	y0309	-223	3.6	TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568	Spro_4782	-71	4.3	TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043	ECA0191	-65	4	TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202	ETAE_3483	-65	3.9	TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320	PMI3236	-65	3.9	TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1	plu4745	-65	3.9	TAATGTATTTTTATTCAAAAAA

Position: -122 Score: 4.3 Sequence: TATTGTTAATCACATCATAAAT Locus tag: Salmonellaentericaenterica_010100046952
	Salmonellaentericaenterica_010100046952	-122	4.3	TATTGTTAATCACATCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Salmonella typhimurium LT2	STM1101	-122	4.7	TATTGTTAATCACATCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04788	-125	4.4	TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568	Spro_0626	-123	5	TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu0989	-159	3.7	AATAATGATAAAAAACAAATTT
		-129	4.9	TATTGTTACTGAGATCACAATT

Position: -128 Score: 4 Sequence: TTATCTGATTTTACTCCCACTT Position: -44 Score: 3.5 Sequence: GAGTGTGATATGCATAAAACCA Locus tag: Salmonellaentericaenterica_010100047244
	Salmonellaentericaenterica_010100047244	-128	4	TTATCTGATTTTACTCCCACTT
		-44	3.5	GAGTGTGATATGCATAAAACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ydgD
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b1598	-93	4	TTATCTGATTTTACTCCCACTT
Salmonella typhimurium LT2	STM1484	-93	4	TTATCTGATTTTACTCCCACTT
Citrobacter koseri ATCC BAA-895	CKO_01604	-95	4	TTATCTGATTTTACTCCCACTT
Enterobacter sp. 638	Ent638_1914	-53	4.1	TATTTTAATAGGGTTCACTTTT
Yersinia pestis KIM	y2013	-160	3.6	TTTTTTTATTTATAGCACGAAC

Position: -166 Score: 3.1 Sequence: TACATTGACGTACTGCATGTAT Locus tag: Salmonellaentericaenterica_010100047661
	Salmonellaentericaenterica_010100047661	-166	3.1	TACATTGACGTACTGCATGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655	b3357	-154	3.3	TACATTGATGTACTGCATGTAT
		-136	3.3	GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2	STM3466	-159	3.1	TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895	CKO_04777	-160	3.1	TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03743	-158	3.3	TACATTGATGTACTGCATGTAT
Enterobacter sp. 638	Ent638_3784	-128	2.9	AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM	y3956	-309	3	AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568	Spro_4580	-121	3.5	ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320	PMI2820	-135	3.3	TATTATAATCTATTCCTTATTA

Position: -128 Score: 3.7 Sequence: ATTTGTGCGTTCCGCCACAGAT Locus tag: Salmonellaentericaenterica_010100048576
	Salmonellaentericaenterica_010100048576	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655	b2175	-130	4.1	TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2	STM2214	-128	3.7	ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02608	-292	3.6	TAGGGTAATCTCGTTCTCGTTT
		-234	4.2	AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638	Ent638_2771	-250	3.6	AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM	y2908	-128	3.7	GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2735	-159	3.9	TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202	ETAE_2298	-131	4.4	AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320	PMI0831	-129	4.2	TTACGTGCTTTAGAGCACGTTT

Position: -121 Score: 4.9 Sequence: TTTTGTGAATTCTTTCACAGAA Locus tag: Salmonellaentericaenterica_010100048941
	Salmonellaentericaenterica_010100048941	-121	4.9	TTTTGTGAATTCTTTCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yeiT
Ortholog function: predicted oxidoreductase
Escherichia coli str. K-12 substr. MG1655	b2146	-112	4.8	ATTTGTGAATCTTTTCACAGTT
Salmonella typhimurium LT2	STM2186	-201	3.5	ATTTATTATCCCTTTAAAATTG
		-168	4.1	TATTATGATATAAGGAACAAAT
		-121	4.9	TTTTGTGAATTCTTTCACAGAA

Position: -78 Score: 4.8 Sequence: CAATGAGATTTAGATCACATAT Locus tag: Salmonellaentericaenterica_010100048956
	Salmonellaentericaenterica_010100048956	-78	4.8	CAATGAGATTTAGATCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cdd
Ortholog function: cytidine deaminase
Escherichia coli str. K-12 substr. MG1655	b2143	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	5.1	TAATGAGATTCAGATCACATAT
Salmonella typhimurium LT2	STM2183	-128	4.2	ATTTGCGATACGTCGCGCATTT
		-78	4.8	CAATGAGATTTAGATCACATAT
Citrobacter koseri ATCC BAA-895	CKO_00646	-128	4.3	ATTTGCGATGCGTCGCGCATTT
		-78	4.8	CAATGAGATTTGGATCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02584	-78	4.4	GAATGAGATATTCATCACATAT
Enterobacter sp. 638	Ent638_2746	-127	4.2	ATTTGCGATGCGTCGCGCAATT
		-77	4.9	TAATGAGAACTGGATCACATAT
Erwinia amylovora ATCC 49946	EAM_2202	-124	3.9	ACTTGCGATAAGTCTCTCATTT
		-104	4.1	TTTGGTGATGCATTTCATTTAT
		-74	4.7	TAGAGCGATTTAGATCACATAT
Yersinia pestis KIM	y2657	-75	5	TAATGAGATATAAATCACAATT
Serratia proteamaculans 568	Spro_1568	-127	4.1	ACTTGCGATACATCTCGCAATT
		-77	4.5	TAAAGAGATTTACATCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2830	-130	4.6	AATTGAGATACATCTCGCATTT
		-79	4.5	TAAAGAGATTCCGATCACAATT
Edwardsiella tarda EIB202	ETAE_1162	-76	4.9	AAAAGTGATTATTATCACAAAT
Proteus mirabilis HI4320	PMI0643	-132	4.4	ATTTGAGATGTATCTCCCAATT
		-82	5.1	AAATATGATTTTAATCACATAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1547	-75	4.7	CTATATGATATTTATCACATTA

Position: -124 Score: 4.7 Sequence: TTTTGTGATGCGGCGCATAAAT Locus tag: Salmonellaentericaenterica_010100050006
	Salmonellaentericaenterica_010100050006	-124	4.7	TTTTGTGATGCGGCGCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiH
Ortholog function: putative transcriptional regulator
Escherichia coli str. K-12 substr. MG1655	b0796	-123	4.5	TTTTGTGACGCAGCGCATAAAT
Salmonella typhimurium LT2	STM0819	-124	4.7	TTTTGTGATGCGGCGCATAAAT
Citrobacter koseri ATCC BAA-895	CKO_02331	-124	4.5	TTTTGTGACATACCGCATAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00824	-224	3.6	AAATGAAACGGTATTCAAAAAA
		-118	4.7	AATTGTTAAGCCCATCACAAAT
Enterobacter sp. 638	Ent638_1287	-126	4.4	TTTTGTGACACGGCGCATAAAA
Serratia proteamaculans 568	Spro_1330	-146	4.6	TTAAGTGACGCAGAGCACAATA
Proteus mirabilis HI4320	PMI0619	-160	3.6	AATTTTTAAATAAATCATGTTT

Position: -103 Score: 4.6 Sequence: CTTAGTGATCTACCTCACCTTT Locus tag: Salmonellaentericaenterica_010100051126
	Salmonellaentericaenterica_010100051126	-103	4.6	CTTAGTGATCTACCTCACCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: b2462
Ortholog function: putative carboxysome structural protein, ethanol utilization
Escherichia coli str. K-12 substr. MG1655	b2462	-103	4.6	CTTAGTGATCTACCTCACCTTT
Salmonella typhimurium LT2	STM2470	-168	3.8	AAATGTGATGCACCACGATATT
		-103	4.6	CTTAGTGATCTACCTCACCTTT
Citrobacter koseri ATCC BAA-895	CKO_00333	-103	4.6	CTTAGTGATCTACTTCACCTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02796	-102	4.3	CTGAGTGATCCACTTCACCTTT

Position: -201 Score: 4 Sequence: TGTTTTTACTTCACTCACATAA Locus tag: Salmonellaentericaenterica_010100051141
	Salmonellaentericaenterica_010100051141	-201	4	TGTTTTTACTTCACTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rcsA
Ortholog function: Colanic acid capsular biosynthesis activation accesory protein RcsA, co-regulator with RcsB
Escherichia coli str. K-12 substr. MG1655	b1951	-201	4	TGTTTTAAGCTCACTCACATAT
Salmonella typhimurium LT2	STM1982	-201	4	TGTTTTTACTTCACTCACATAA
Citrobacter koseri ATCC BAA-895	CKO_00992	-200	4.1	TGTTTTTACCTTACTCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02421	-195	3.7	TGTTTTTAATTCGGTCACACTA
Enterobacter sp. 638	Ent638_2542	-206	4.3	TGTTTTTATGCCCTTCACAATA

Position: -258 Score: 4.5 Sequence: AAGTTTGACGTTGTTCACAAAG Locus tag: Salmonellaentericaenterica_010100051186
	Salmonellaentericaenterica_010100051186	-258	4.5	AAGTTTGACGTTGTTCACAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompF
Ortholog function: Outer membrane protein F precursor
Salmonella typhimurium LT2	STM0999	-245	4.5	AAGTTTGACGTTGTTCACAAAG
Enterobacter sp. 638	Ent638_1448	-245	4.6	AAATTTGAGGTGGTTCACAAAG

Position: -125 Score: 4 Sequence: AGATGTGTACGAAATCACGTTT Locus tag: Salmonellaentericaenterica_010100051241
	Salmonellaentericaenterica_010100051241	-125	4	AGATGTGTACGAAATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybiT
Ortholog function: ABC transporter ATP-binding protein
Escherichia coli str. K-12 substr. MG1655	b0820	-124	4.4	AGATGTGTACGAAATCACATTT
Salmonella typhimurium LT2	STM0838	-124	4	AGATGTGTACGAAATCACGTTT
Citrobacter koseri ATCC BAA-895	CKO_02298	-148	4.4	AGATGTGTACGAAATCACATTT
Enterobacter sp. 638	Ent638_1311	-125	4.4	AGATGTGTACGAAATCACATTT
Yersinia pestis KIM	y2677	-295	3.9	TATCGTTATACCCGTCATACTT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA3010	-41	4	TAATGCGCGCCAAATCACATTC
Edwardsiella tarda EIB202	ETAE_2518	-40	4.8	TAATGTGAACAAAATCACGTTA

Position: -153 Score: 3.5 Sequence: GTTTGTGAGGTTATTAGCGAAA Position: -125 Score: 3.3 Sequence: ATTCGTGATCCGTTTGTTGTTT Locus tag: Salmonellaentericaenterica_010100051261
	Salmonellaentericaenterica_010100051261	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
		-125	3.3	ATTCGTGATCCGTTTGTTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655	b0116	-224	3.3	AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2	STM0154	-153	3.5	GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895	CKO_03256	-95	3.3	AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00120	-105	3.3	AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM	y0769	-253	3.3	ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568	Spro_4009	-246	3.6	TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320	PMI2044	-133	3.4	GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1	plu3621	-131	3.9	TGTTGCGAGTTCTGTCACGTTA

Position: -246 Score: 4.7 Sequence: TAAAGTGATGATAATCACAGAA Position: -206 Score: 4.9 Sequence: AAATGTGACCGCCATCATATTA Locus tag: Salmonellaentericaenterica_010100051501
	Salmonellaentericaenterica_010100051501	-246	4.7	TAAAGTGATGATAATCACAGAA
		-206	4.9	AAATGTGACCGCCATCATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fucP
Ortholog function: L-fucose permease
Escherichia coli str. K-12 substr. MG1655	b2801	-207	4.9	TAAAGTGATGGTAGTCACATAA
		-167	4.5	AAGTGTGACCGCCGTCATATTA
Citrobacter koseri ATCC BAA-895	CKO_04160	-219	5	TAAAGTGATGATAATCACATAA
		-179	4.8	AAATGTGACCACCATCATATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_03152	-260	4.7	TAAAGTGACAATAATCACATAA
		-220	4.6	AAGTGTGACCATCATCATATTA

Position: -149 Score: 5.7 Sequence: TTTTGTGATATAGTTCACAAAA Locus tag: Salmonellaentericaenterica_010100052115
	Salmonellaentericaenterica_010100052115	-149	5.7	TTTTGTGATATAGTTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjcB
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655	b4060	-149	5.7	AATTGTGATATAGTTCACAAAA
Salmonella typhimurium LT2	STM4263	-149	5.7	TTTTGTGATATAGTTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_03830	-150	5.7	TATTGTGATATAGTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04460	-143	5.4	AAGTGTGATATAGTTCACACAA
Enterobacter sp. 638	Ent638_0263	-82	5.3	AAACGTGATATAGTTCACACAT
Serratia proteamaculans 568	Spro_2355	-81	5	CAATGTGACGCAGATCACACTA

Position: -226 Score: 4.8 Sequence: AATCGTGACTGATGTCACATTA Locus tag: Salmonellaentericaenterica_010100052552
	Salmonellaentericaenterica_010100052552	-226	4.8	AATCGTGACTGATGTCACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655	b1779	-226	5.3	AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2	STM1290	-226	4.8	AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895	CKO_01800	-226	5	AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_01197	-225	5.2	AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638	Ent638_1675	-225	5.7	AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946	EAM_1931	-215	5.4	AATTGTGATGCAGATCACCATT
Yersinia pestis KIM	y2165	-218	5.1	AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568	Spro_2728	-227	5.6	ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043	ECA2344	-235	5.8	AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202	ETAE_1483	-227	5.1	TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320	PMI1504	-226	5.6	AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1	plu2558	-224	5.4	TATTGTGATGTGACTCGCATAT

Position: -127 Score: 3.8 Sequence: TGATGTAAATTGAATCAACTAT Position: -109 Score: 4.5 Sequence: CTATGTGATTTCCATCTAATAT Position: -79 Score: 4.2 Sequence: TTTTGCGATATGGTTCATTTTA Locus tag: Salmonellaentericaenterica_010100052827
	Salmonellaentericaenterica_010100052827	-127	3.8	TGATGTAAATTGAATCAACTAT
		-109	4.5	CTATGTGATTTCCATCTAATAT
		-79	4.2	TTTTGCGATATGGTTCATTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdC
Ortholog function: DNA-binding transcriptional dual regulator
Escherichia coli str. K-12 substr. MG1655	b2364	-115	3.9	TGGAGTGATTTACATCTAAAAA
		-85	4.6	AATTGAGATATGGTTCACTTTA
Salmonella typhimurium LT2	STM3800	-142	3.8	TGATGTAAATTGAATCAACTAT
		-124	4.5	CTATGTGATTTCCATCTAATAT
		-94	4.2	TTTTGCGATATGGTTCATTTTA
Citrobacter koseri ATCC BAA-895	CKO_00019	-32	3.9	AAGGGTGATTTGCATCCAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04079	-125	3.9	AAAGGTGATTTAGCTCTAAAAG
		-95	4.2	AAATATGCTATGGGTCAAATTA
Serratia proteamaculans 568	Spro_2451	-76	3.6	TTTAGCGACATGGGTCAACTTT
Proteus mirabilis HI4320	PMI0184	-199	3.6	TATTGTTAAACATATTGAATAT
		-117	4.4	ATAGGTGATCAGATGCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1	plu1968	-124	4.4	TTCAGTGATACCGATCAAAATT
		-94	4.5	ATTTGCGATTTAAATCACTAAA

Position: -153 Score: 4 Sequence: TAAAATGAACCATATCGCAAAA Position: -123 Score: 4.2 Sequence: ATATTAGATGGAAATCACATAG Locus tag: Salmonellaentericaenterica_010100052832
	Salmonellaentericaenterica_010100052832	-153	4	TAAAATGAACCATATCGCAAAA
		-123	4.2	ATATTAGATGGAAATCACATAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: dsdX
Ortholog function: DsdX permease
Escherichia coli str. K-12 substr. MG1655	b2365	-154	4.4	TAAAGTGAACCATATCTCAATT
Salmonella typhimurium LT2	STM3801	-153	4	TAAAATGAACCATATCGCAAAA
		-123	4.2	ATATTAGATGGAAATCACATAG
Citrobacter koseri ATCC BAA-895	CKO_00020	-124	4	TTATTGGATGCAAATCACCCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_04080	-152	4.3	TAATTTGACCCATAGCATATTT
		-122	3.7	CTTTTAGAGCTAAATCACCTTT

Position: -98 Score: 3.8 Sequence: TAGTGTAGTCGTCGTCACAAAA Locus tag: Salmonellaentericaenterica_010100052899
	Salmonellaentericaenterica_010100052899	-98	3.8	TAGTGTAGTCGTCGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhQ
Ortholog function: putative inner membrane protein
Escherichia coli str. K-12 substr. MG1655	b0791	-98	3.9	TAGTGTAGTCGGCGTCACAAAA
Salmonella typhimurium LT2	STM0814	-98	3.8	TAGTGTAGTCGTCGTCACAAAA
Citrobacter koseri ATCC BAA-895	CKO_02336	-153	3.8	TAGTGTAGTCGTCGTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_00819	-97	3.8	TAGTGTAGTAGACGTCACAAAA
Enterobacter sp. 638	Ent638_1282	-98	3.9	AAGTGTAGTCGGCGTCACAAAA

Position: -188 Score: 3.9 Sequence: TTTTTTGATTGAAATCAGGCTA Position: -83 Score: 4.7 Sequence: ATTTGTGAGTGGTCGCACATAA Locus tag: Salmonellaentericaenterica_010100053536
	Salmonellaentericaenterica_010100053536	-188	3.9	TTTTTTGATTGAAATCAGGCTA
		-83	4.7	ATTTGTGAGTGGTCGCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: tdcA
Ortholog function: Threonine catabolic operon transcriptional activator TdcA
Escherichia coli str. K-12 substr. MG1655	b3118	-225	4	TGATGTTATCGCCATAAAATAT
		-82	4.7	ATTTGTGAGTGGTCGCACATAT
Salmonella typhimurium LT2	STM3245	-188	3.9	TTTTTTGATTGAAATCAGGCTA
		-83	4.7	ATTTGTGAGTGGTCGCACATAA
Citrobacter koseri ATCC BAA-895	CKO_04518	-225	4.3	ATATGTTATCGCCATAAAATAT
		-187	3.9	TTTTTTGACAAAAATCATGATA
		-82	4.6	ATTTGTGAGTAGTCGCACATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	KPN_02296	-82	4.6	CTTTGTGAGAGCTCTCACATAA
		-54	3.7	AATTGCGATTTGTTACACTTTC
Enterobacter sp. 638	Ent638_3565	-82	3.9	ATTTGTGAGTAACAGCACATCC

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Propagation of Crp regulog to Salmonella enterica subsp. enterica serovar Typhi str. AG3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --