Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Salmonella enterica subsp. enterica serovar Typhi str. AG3

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 1 1
TF AraC Arabinose Arabinose utilization 1 2
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 12 25
TF BirA Biotin Biotin biosynthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 179 396
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF DeoR Deoxyribonucleoside utilization 1 1
TF ExuR Galacturonate Galacturonate utilization 1 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 6 7
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 73 121
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 12 18
TF FucR L-fuculose-1-phosphate Fucose utilization 1 1
TF Fur Iron ion, (Fe2+) Iron homeostasis 26 74
TF GalR/GalS Galactose Galactose utilization 2 2
TF GcvA Glycine Glycine metabolism 1 1
TF GlpR Glycerol 3-phosphate Glycerol utilization 3 3
TF GntR Gluconate Gluconate utilization 3 6
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 2 2
TF HutC cis-Urocanic acid Histidine utilization 1 1
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 1 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 3 4
TF KdgR 2-keto-3-deoxygluconate Pectin and polygalacturonate utlization 6 9
TF LeuO Guanosine 3',5'-bis(diphosphate) 4 8
TF LexA DNA damage SOS response 15 18
TF LldR L-lactate Lactate utilization 1 1
TF LsrR 4,5-dihydroxypentan-2,3-dione Quorum sensing; Biofilm formation 2 2
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 1 1
TF MarR Salicylate; Tetracycline; Chloramphenicol Antibiotic resistance 1 2
TF MetR Homocysteine Methionine biosynthesis 4 5
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 4 4
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 1 1
TF NadR NAD NAD biosynthesis 1 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 4
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 18 20
TF NikR Nickel ion, (Ni2+) Nickel homeostasis 1 1
TF NorR Nitric oxide Nitrosative stress response 2 3
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 2 5
TF NsrR Nitric oxide Nitrosative stress response 4 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 6
TF PdhR Pyruvate Pyruvate metabolism 1 1
TF PhnR 2-aminoethylphosphonate Phosphonate utilization; 2-aminoethylphosphonate utilization 2 2
TF PurR Hypoxanthine; Guanine Purine metabolism 18 25
TF RbsR Ribose Ribose utilization 1 1
TF RcnR Nickel ion, (Ni2+); Cobalt ion, (Co2+) Cobalt resistance; Nickel resistance 2 2
TF RhaR Rhamnose Rhamnose utilization 2 2
TF RhaS Rhamnose Rhamnose utilization 2 2
TF SdaR Glycerate Glucarate utilization; Galactarate utilization 1 1
TF SiaR Glucosamine-6-phosphate Sialic acid utilization 2 2
TF SoxR Paraquat Superoxide stress response 2 2
TF TrpR Tryptophan Tryptophan biosynthesis 3 3
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 7 14
TF UlaR Ascorbate-6-phosphate Ascorbate utilization 1 2
TF UxuR Glucuronate Glucuronate utilization 4 8
TF XapR Deoxyinosine; Xanthosine Xanthosine utilization 1 1
TF ZntR Zinc ion, (Zn2+) Zinc resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 2
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