Propagation of KdgR regulog to Salmonella enterica subsp. enterica serovar Typhi str. AG3
Source regulog: | KdgR - Enterobacteriales |
Regulator type: | Transcription factor |
Regulator family: | IclR |
Regulation mode: | repressor (activator) |
Biological process: | Pectin and polygalacturonate utlization |
Effector: | 2-keto-3-deoxygluconate |
Phylum: | Proteobacteria/gamma |
Propagated regulon: | |
Target genome | Salmonella enterica subsp. enterica serovar Typhi str. AG3 |
Orthologous TF(s) | Salmonellaentericaenterica_010100036808, Salmonellaentericaenterica_010100036813 |
Regulated genes | 6 |

Locus tag | Position | Score | Sequence | |
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Position: -231
Score: 5.4 Sequence: TTATGAAACATTGTTTCAGAT
Locus tag: Salmonellaentericaenterica_010100001644
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Salmonellaentericaenterica_010100001644 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: tpfX | ||||
Ortholog function: ThiJ/PfpI-family hypothetical protein | ||||
Salmonella typhimurium LT2 | STM1931 | -231 | 5.4 | TTATGAAACATTGTTTCAGAT |
Citrobacter koseri ATCC BAA-895 | CKO_01049 | -199 | 5.4 | TTTTGAAATGATGTTTCATAT |
Enterobacter sp. 638 | Ent638_2477 | -42 | 5 | GGATGAAACGCTGTTTTAAAT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0102 | -85 | 6.1 | TAATAAAACATCGTTTCATTT |
Position: -132
Score: 4.9 Sequence: AAATGAAACACACTTTTCATT
Locus tag: Salmonellaentericaenterica_010100009233
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Salmonellaentericaenterica_010100009233 | -132 | 4.9 | AAATGAAACACACTTTTCATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: ppsR | ||||
Ortholog function: PEP synthetase regulatory protein | ||||
Escherichia coli str. K-12 substr. MG1655 | b1703 | -131 | 5.3 | AAATGAAATGCTGTTTTCATA |
Salmonella typhimurium LT2 | STM1348 | -131 | 4.9 | AAATGAAACACACTTTTCATT |
Citrobacter koseri ATCC BAA-895 | CKO_01727 | -107 | 5.5 | TATAAAAATAGCGTTTCATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_02161 | -97 | 5.1 | AACAAAAATAGCGTTTCAATT |
Enterobacter sp. 638 | Ent638_1744 | -107 | 5.3 | ATTAAAAACACCATTTCATTT |
Serratia proteamaculans 568 | Spro_2173 | -134 | 5.2 | ATTTGAAATAGTGTTTTACTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA1852 | -94 | 5.6 | TAATGAAATGGCGTTTTAATA |
Position: -123
Score: 6.2 Sequence: AAATGAAACGTTGTTTTATTT
Locus tag: Salmonellaentericaenterica_010100014734
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Salmonellaentericaenterica_010100014734 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kduI | ||||
Ortholog function: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) | ||||
Escherichia coli str. K-12 substr. MG1655 | b2843 | -130 | 6.3 | AAATGAAACATTGTTTTATTT |
-63 | 5.4 | AAACGAAACAGTGTTTCACTA | ||
Salmonella typhimurium LT2 | STM3018 | -123 | 6.2 | AAATGAAACGTTGTTTTATTT |
-58 | 5.3 | AATCAAAACAGTGTTTTGATT | ||
Citrobacter koseri ATCC BAA-895 | CKO_04220 | -119 | 6.2 | AAATGAAACAACGTTTTATTT |
-51 | 4.4 | AAACGGAACGGTGTTTCGCCT | ||
Enterobacter sp. 638 | Ent638_3296 | -127 | 5.4 | AACTGAAACAACGTTTTAAAT |
-60 | 5 | AATCGGAACATTGTTTCGTTA | ||
Yersinia pestis KIM | y1887 | -201 | 6 | TAATAAAACATCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA2400 | -209 | 6.1 | AAATAAAACATTATTTCATTT |
Edwardsiella tarda EIB202 | ETAE_1898 | -129 | 5.6 | AATCAAAACAGCATTTCATTT |
Position: -32
Score: 5.7 Sequence: AAATAAAACGCTGTTTTAACT
Locus tag: Salmonellaentericaenterica_010100042698
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Salmonellaentericaenterica_010100042698 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjgK | ||||
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization | ||||
Escherichia coli str. K-12 substr. MG1655 | b4252 | -35 | 6 | AAATGAAACGTTGTTTTAATT |
Salmonella typhimurium LT2 | STM4468 | -32 | 5.7 | AAATAAAACGCTGTTTTAACT |
Citrobacter koseri ATCC BAA-895 | CKO_03553 | -33 | 6.2 | AAATGAAACGTTGTTTTATTT |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04658 | -33 | 5.8 | AAATGAAATGCTGTTTTATAT |
Enterobacter sp. 638 | Ent638_0453 | -34 | 6 | AAATGAAACATTGTTTTATAT |
Yersinia pestis KIM | y0739 | -41 | 5.9 | TAATAAAACAGCATTTCATTT |
Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0383 | -41 | 5.1 | TTGTAAAACAGGGTTTCATTT |
Edwardsiella tarda EIB202 | ETAE_3112 | -39 | 5.6 | AAATAAAACGCAGTTTTATAA |
Position: -229
Score: 5.8 Sequence: AAATAAAACATTATTTTAATT
Locus tag: Salmonellaentericaenterica_010100047042
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Salmonellaentericaenterica_010100047042 | -229 | 5.8 | AAATAAAACATTATTTTAATT | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: kdgX | ||||
Ortholog function: predicted 2-keto-3-deoxygluconate permease | ||||
Salmonella typhimurium LT2 | STM4395 | -34 | 5.8 | AAATAAAACATTATTTTAATT |
Citrobacter koseri ATCC BAA-895 | CKO_03627 | -31 | 5.2 | AAATAAAACATTATTTCAAAG |
Enterobacter sp. 638 | Ent638_0375 | -33 | 5.9 | AATTGAAACGTCATTTTATTT |
Yersinia pestis KIM | y1734 | -22 | 5.8 | TAACGAAACATCATTTCATTT |
Position: -120
Score: 5.1 Sequence: AACAGAAACAATGTTTCATTC
Locus tag: Salmonellaentericaenterica_010100052115
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Salmonellaentericaenterica_010100052115 | -120 | 5.1 | AACAGAAACAATGTTTCATTC | |
Supported by regulated orthologs from reference regulons | ||||
Ortholog gene name: yjcB | ||||
Ortholog function: putative inner membrane protein | ||||
Salmonella typhimurium LT2 | STM4263 | -120 | 5.4 | AATAGAAACAATGTTTCATTC |
Citrobacter koseri ATCC BAA-895 | CKO_03830 | -121 | 5.1 | AACAGAAACGTTGTTTCATTC |
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04460 | -113 | 4.9 | AACAGAAATGGCGTTTCATCA |