Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Propagation of KdgR regulog to Yersinia pestis FV-1

Reference regulog properties
Source regulog: KdgR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: IclR
Regulation mode: repressor (activator)
Biological process: Pectin and polygalacturonate utlization
Effector: 2-keto-3-deoxygluconate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Yersinia pestis FV-1
Orthologous TF(s) YpesF_010100007124
Regulated genes 11
Built upon 159 sites [see more]
Predicted regulatory interactions in Yersinia pestis FV-1
Locus tag Position Score Sequence
Position: -75
Score: 5.7
Sequence: AAATAAAATACTGTTTCATAA
Locus tag: YpesF_010100005242
YpesF_010100005242 -75 5.7 AAATAAAATACTGTTTCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Enterobacter sp. 638 Ent638_0483 -304 4.9 TCTCAAAACATCATTTCATTT
Yersinia pestis KIM y3833 -75 5.7 AAATAAAATACTGTTTCATAA
Position: -225
Score: 5.1
Sequence: ATTTAAAACACCGTTTTAATC
Locus tag: YpesF_010100005277
YpesF_010100005277 -225 5.1 ATTTAAAACACCGTTTTAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgK
Ortholog function: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Yersinia pestis KIM y3838 -225 5.1 ATTTAAAACACCGTTTTAATC
Serratia proteamaculans 568 Spro_4750 -105 6.2 AAATAAAACGTTGTTTTATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4360 -125 5.4 AAATAAAACATCGTTTCAAGA
Edwardsiella tarda EIB202 ETAE_3377 -91 5.4 AAACAGAACGTTGTTTTATTT
Position: -96
Score: 5.8
Sequence: AAATGAAACATTGTTTCTATA
Locus tag: YpesF_010100007119
YpesF_010100007119 -96 5.8 AAATGAAACATTGTTTCTATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ogl
Ortholog function: Oligogalacturonate lyase (EC 4.2.2.6)
Enterobacter sp. 638 Ent638_3293 -226 5.1 AATTAAAACGCCGTTTTACAA
Yersinia pestis KIM y1875 -96 5.8 AAATGAAACATTGTTTCTATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2426 -180 5.8 AAATGAAACATTGTTTCTATA
Position: -76
Score: 4.7
Sequence: AATAAAACCATTGTTCTATTT
Locus tag: YpesF_010100007124
YpesF_010100007124 -76 4.7 AATAAAACCATTGTTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgR
Ortholog function: 2-keto-3-deoxy-D-gluconate repressor, IclR family
Yersinia pestis KIM y1876 -76 4.7 AATAAAACCATTGTTCTATTT
Position: -103
Score: 5.4
Sequence: AAATGAAACATTGCTTCTTTT
Locus tag: YpesF_010100007144
YpesF_010100007144 -103 5.4 AAATGAAACATTGCTTCTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgM
Ortholog function: Oligogalacturonate-specific porin protein KdgM
Yersinia pestis KIM y1880 -103 5.4 AAATGAAACATTGCTTCTTTT
Position: -76
Score: 5.2
Sequence: GATTGAAACGATGTTTCTATT
Locus tag: YpesF_010100007169
YpesF_010100007169 -76 5.2 GATTGAAACGATGTTTCTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pelW
Ortholog function: Exopolygalacturonate lyase (EC 4.2.2.9)
Yersinia pestis KIM y1885 -152 4.5 AATCAAAACAACGTTCCGACT
-76 5.2 GATTGAAACGATGTTTCTATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2402 -139 4.5 AATCAAAACAACGTTCCGACT
-61 5.3 AATCAAAACAGTGTTTCTATT
Position: -149
Score: 5.5
Sequence: AAATGGAATGGCGTTTCATTT
Locus tag: YpesF_010100007684
YpesF_010100007684 -149 5.5 AAATGGAATGGCGTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pemA
Ortholog function: Putative pectinesterase (EC 3.1.1.11)
Yersinia pestis KIM y3757 -149 5.3 AAATGGAATTGCGTTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3253 -213 5.1 TATTAAAATAACATTTCACTT
Position: -133
Score: 5.2
Sequence: ATATGAAACGGTGTTCTGTTT
Locus tag: YpesF_010100014809
YpesF_010100014809 -133 5.2 ATATGAAACGGTGTTCTGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygjV
Ortholog function: putative transport protein
Escherichia coli str. K-12 substr. MG1655 b3090 -64 5.4 ATAAAAAACGGCGTTTCATAA
Yersinia pestis KIM y3597 -133 5.2 ATATGAAACGGTGTTCTGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0648 -70 6.2 AAATAAAACGGCGTTTCATTT
Position: -41
Score: 5.9
Sequence: TAATAAAACAGCATTTCATTT
Locus tag: YpesF_010100017324
YpesF_010100017324 -41 5.9 TAATAAAACAGCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjgK
Ortholog function: cytoplasmic protein involved in polygalacturonate utilization
Escherichia coli str. K-12 substr. MG1655 b4252 -35 6 AAATGAAACGTTGTTTTAATT
Salmonella typhimurium LT2 STM4468 -32 5.7 AAATAAAACGCTGTTTTAACT
Citrobacter koseri ATCC BAA-895 CKO_03553 -33 6.2 AAATGAAACGTTGTTTTATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04658 -33 5.8 AAATGAAATGCTGTTTTATAT
Enterobacter sp. 638 Ent638_0453 -34 6 AAATGAAACATTGTTTTATAT
Yersinia pestis KIM y0739 -41 5.9 TAATAAAACAGCATTTCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0383 -41 5.1 TTGTAAAACAGGGTTTCATTT
Edwardsiella tarda EIB202 ETAE_3112 -39 5.6 AAATAAAACGCAGTTTTATAA
Position: -43
Score: 5.8
Sequence: TAACGAAACATCATTTCATTT
Locus tag: YpesF_010100018979
YpesF_010100018979 -43 5.8 TAACGAAACATCATTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: kdgX
Ortholog function: predicted 2-keto-3-deoxygluconate permease
Salmonella typhimurium LT2 STM4395 -34 5.8 AAATAAAACATTATTTTAATT
Citrobacter koseri ATCC BAA-895 CKO_03627 -31 5.2 AAATAAAACATTATTTCAAAG
Enterobacter sp. 638 Ent638_0375 -33 5.9 AATTGAAACGTCATTTTATTT
Yersinia pestis KIM y1734 -22 5.8 TAACGAAACATCATTTCATTT
Position: -37
Score: 6.1
Sequence: AAATGAAACATTGTTTTAATT
Locus tag: YpesF_010100024022
YpesF_010100024022 -37 6.1 AAATGAAACATTGTTTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: togT
Ortholog function: Oligogalacturonide transporter
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02398 -46 5.2 TATAAAAACAGTGTTTCAAAA
Yersinia pestis KIM y2961 -47 4.5 AAAGAAAACAGTTATTCATTA
-25 6.1 AAATGAAACATTGTTTTAATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0817 -60 4.5 TAAAGAAATGATAGTTCAATC
-38 5.5 AACTGAAATATTGTTTCATAT
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