Propagation of Fur regulog to Shewanella frigidimarina NCIMB 400
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella frigidimarina NCIMB 400 |
| Orthologous TF(s) | Sfri_0586, Sfri_2338 |
| Regulated genes | 22 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -75
Score: 5.7 Sequence: AAATGAGAATAGTTTCCATTA
Locus tag: Sfri_0391
|
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| Sfri_0391 | -75 | 5.7 | AAATGAGAATAGTTTCCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_1590 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1590 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp W3-18-1 | Sputw3181_2432 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp ANA-3 | Shewana3_2551 | -99 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp MR-4 | Shewmr4_2386 | -98 | 6.2 | AAATGAGAATTATTGTCATTT |
| Shewanella sp MR-7 | Shewmr7_2458 | -98 | 5.5 | AAATGAGAATTATTGTCACCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0391 | -75 | 5.7 | AAATGAGAATAGTTTCCATTA |
|
Position: -54
Score: 5.9 Sequence: TAATGATAATGAATATCATTA
Locus tag: Sfri_0392
|
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| Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |
|
Position: -103
Score: 5.8 Sequence: AAATGATAATGATTTGTATTT
Locus tag: Sfri_0611
|
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| Sfri_0611 | -103 | 5.8 | AAATGATAATGATTTGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3914 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_0611 | -103 | 5.8 | AAATGATAATGATTTGTATTT |
|
Position: -67
Score: 5.9 Sequence: AATTGATAACCATTATCAATT
Locus tag: Sfri_0636
|
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| Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbpA | ||||
| Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA | ||||
| Shewanella oneidensis MR-1 | SO0744 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3227 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_0714 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp ANA-3 | Shewana3_3517 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-4 | Shewmr4_3347 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-7 | Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella baltica OS155 | Sbal_0812 | -76 | 5.4 | AACTGATAAGCATTATCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT |
| Shewanella amazonensis SB2B | Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA |
| Shewanella loihica PV-4 | Shew_0861 | -41 | 6.1 | AATTGATAATTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0897 | -64 | 5.4 | AATTGAGAATTATTATCAGTC |
| Shewanella piezotolerans WP3 | swp_4107 | -60 | 5.2 | AATTGAGAACTATTATCAGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0945 | -58 | 5.7 | GATTGATAATAATTATCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_0996 | -57 | 5.4 | AATTGATAACTATTATCATCG |
|
Position: -78
Score: 5.6 Sequence: TAATGCGAATCGTTATCAATT
Locus tag: Sfri_0810
|
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| Sfri_0810 | -78 | 5.6 | TAATGCGAATCGTTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_0810 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella denitrificans OS217 | Sden_0721 | -74 | 5.8 | TAATGCAAATTGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0810 | -78 | 5.6 | TAATGCGAATCGTTATCAATT |
| Shewanella loihica PV-4 | Shew_0675 | -77 | 6 | TAATGCAAATTATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_0670 | -100 | 5.7 | TAATGTAAATCATTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3528 | -100 | 5.7 | TAATGTAAATCATTCTCATTT |
| Shewanella piezotolerans WP3 | swp_4049 | -86 | 5.8 | TAATGCAAATCGTTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3793 | -76 | 5.1 | TAATGCAAACGATTCGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0790 | -79 | 5.8 | TAATGAAAACGATTCGCATTT |
|
Position: -121
Score: 6 Sequence: TAATGATAATAGTTATCAATT
Locus tag: Sfri_0957
|
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| Sfri_0957 | -121 | 6 | TAATGATAATAGTTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin subunit 2 | ||||
| Shewanella oneidensis MR-1 | SO1111 | -125 | 5.2 | TAATGAGAATGCTTTTAATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-4 | Shewmr4_0944 | -124 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-7 | Shewmr7_0982 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella baltica OS155 | Sbal_0932 | -126 | 5.3 | AAATGAGAATGGTTGTTATCA |
| Shewanella denitrificans OS217 | Sden_0990 | -120 | 5.6 | TAATGATAATGGTTATCACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -121 | 6 | TAATGATAATAGTTATCAATT |
| Shewanella amazonensis SB2B | Sama_2530 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT |
| Shewanella loihica PV-4 | Shew_2873 | -115 | 4.8 | GAATGAGAACGATTTTCTTTG |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -121 | 4.3 | TAGTGATAATGAAAATCACTA |
| -88 | 4.3 | TGTTGATATTTAACCTTATTT | ||
| Shewanella piezotolerans WP3 | swp_1175 | -118 | 5.5 | TAATGATAATAATTATCTTTA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -137 | 4.6 | TAATGGGAATGATTATCTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -167 | 4.5 | AAATGATAATGCTTAATGTTA |
|
Position: -116
Score: 6 Sequence: AATTGATAACTATTCTCATTA
Locus tag: Sfri_2008
|
||||
| Sfri_2008 | -116 | 6 | AATTGATAACTATTCTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_2008 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1997 | -63 | 5.9 | TGTTGATAATAATTATCATTT |
| Shewanella sp MR-4 | Shewmr4_2003 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella sp MR-7 | Shewmr7_1972 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella baltica OS155 | Sbal_4484 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella baltica OS155 | Sbal_2198 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella denitrificans OS217 | Sden_1854 | -36 | 6 | AAATAAAAACCATTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2008 | -116 | 6 | AATTGATAACTATTCTCATTA |
| Shewanella amazonensis SB2B | Sama_1788 | -52 | 6 | ATATGATAACTATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2212 | -117 | 6.1 | TATTGATAATCATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2195 | -62 | 5.9 | TGTTGATAATCATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2208 | -64 | 5.8 | CATTGATAATCATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2428 | -62 | 5.9 | AGTTGATAACCATTCTCATTT |
|
Position: -32
Score: 5.6 Sequence: TAATGGTAATCGTTATCATTA
Locus tag: Sfri_2150
|
||||
| Sfri_2150 | -32 | 5.6 | TAATGGTAATCGTTATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2426 | ||||
| Ortholog function: Two component transcriptional regulator, Winged helix family | ||||
| Shewanella oneidensis MR-1 | SO2426 | -2 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1941 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_2064 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1959 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1904 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_2074 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella baltica OS155 | Sbal_2050 | -32 | 5.1 | AAATGATATAGATTCTCGTTT |
| Shewanella denitrificans OS217 | Sden_1906 | 10 | 5.6 | TAATGAAAATGGTTATCGTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2150 | -32 | 5.6 | TAATGGTAATCGTTATCATTA |
| Shewanella amazonensis SB2B | Sama_1718 | -32 | 4.8 | GAATAACAACCGTTCGCATTT |
| Shewanella loihica PV-4 | Shew_1936 | -31 | 6 | TAATGATAACTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_2236 | -34 | 5.3 | TAATGCGAATTATTCGTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2220 | -34 | 5.6 | AAATGAAAATGATTCGCATTG |
| Shewanella piezotolerans WP3 | swp_2595 | -9 | 5.5 | CAATGATAATTGTTCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2316 | -34 | 5.5 | AAATGATAACAGTTCGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2294 | -36 | 5.4 | TGTTGATAATTGTTCGCATTT |
|
Position: -30
Score: 5.4 Sequence: TATTGAAAATGATTATCAATG
Locus tag: Sfri_2159
|
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| Sfri_2159 | -30 | 5.4 | TATTGAAAATGATTATCAATG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1755 | ||||
| Ortholog function: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon | ||||
| Shewanella oneidensis MR-1 | SO1755 | -30 | 5.3 | AATTGAAAATGATTTTCACTG |
| Shewanella putrefaciens CN-32 | Sputcn32_1454 | -30 | 4.8 | GATTGCAAATGATTTTCAATG |
| Shewanella sp W3-18-1 | Sputw3181_2648 | -30 | 4.8 | GATTGCAAATGATTTTCAATG |
| Shewanella sp ANA-3 | Shewana3_2707 | -30 | 4.9 | GATTGAAAATGATTTTCACTG |
| Shewanella sp MR-4 | Shewmr4_2541 | -30 | 4.9 | GATTGAAAATGATTTTCACTG |
| Shewanella sp MR-7 | Shewmr7_2608 | -31 | 4.9 | GATTGAAAATGATTTTCACTG |
| Shewanella baltica OS155 | Sbal_1561 | -30 | 4.8 | GATTGCAAATGATTTTCAATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2159 | -30 | 5.4 | TATTGAAAATGATTATCAATG |
| Shewanella sediminis HAW-EB3 | Ssed_1517 | -67 | 5.3 | AAATGAAAATCATTTGTAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_3151 | -66 | 5.2 | CAATGCTAATGATTTTCAACT |
|
Position: -52
Score: 5.6 Sequence: TTATGATAATCATTATCATTC
Locus tag: Sfri_2440
|
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| Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO1482 | -49 | 5 | GGATGGAAATCATTATCATTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1237 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp W3-18-1 | Sputw3181_2867 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp ANA-3 | Shewana3_2944 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_2768 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella baltica OS155 | Sbal_1315 | -49 | 5 | AAATGCAAATCATTACTATTC |
| Shewanella denitrificans OS217 | Sden_1445 | -48 | 5.2 | CTATGATAATCATTATCATTC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC |
| Shewanella loihica PV-4 | Shew_2690 | -51 | 6 | TATTGATAATCGTTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -51 | 5.6 | TAATAAGAATCGTTATCATCT |
| Shewanella piezotolerans WP3 | swp_3568 | -51 | 5.8 | TAATGATAATGGTTATCATCA |
| Shewanella sediminis HAW-EB3 | Ssed_3242 | -49 | 5.5 | AAATGCAAATCGTTATCATTC |
| Shewanella woodyi ATCC 51908 | Swoo_3375 | -51 | 6 | TAATGATAATCGTTATCATCT |
|
Position: -184
Score: 5.6 Sequence: TATTGCTAATGATTATCATTA
Position: -107
Score: 5.5 Sequence: AATTGATAATAATTATCACTC
Locus tag: Sfri_2548
|
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| Sfri_2548 | -184 | 5.6 | TATTGCTAATGATTATCATTA | |
| -107 | 5.5 | AATTGATAATAATTATCACTC | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: COG3182 | ||||
| Ortholog function: PepSY-associated TM helix domain-containing protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1842 | -90 | 5.7 | AATTGAAAACAATTATCAATA |
| -64 | 5.2 | TATTGATAACAATTCGTATTA | ||
| Shewanella sp W3-18-1 | Sputw3181_2167 | -90 | 5.7 | AATTGAAAACAATTATCAATA |
| -64 | 5.2 | TATTGATAACAATTCGTATTA | ||
| Shewanella sp ANA-3 | Shewana3_2196 | -66 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella sp MR-4 | Shewmr4_2076 | -65 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella sp MR-7 | Shewmr7_1899 | -65 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella baltica OS155 | Sbal_2134 | -64 | 5.4 | TATTGATAACAATTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2548 | -184 | 5.6 | TATTGCTAATGATTATCATTA |
| -107 | 5.5 | AATTGATAATAATTATCACTC | ||
| -80 | 5 | TATTGAGATTCGTTATCAATC | ||
|
Position: -168
Score: 5.5 Sequence: GAGTGATAATTATTATCAATT
Position: -91
Score: 5.6 Sequence: TAATGATAATCATTAGCAATA
Locus tag: Sfri_2549
|
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| Sfri_2549 | -168 | 5.5 | GAGTGATAATTATTATCAATT | |
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3064 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
|
Position: -111
Score: 5.1 Sequence: AACTGAAAACTATTCTCGTTA
Locus tag: Sfri_2617
|
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| Sfri_2617 | -111 | 5.1 | AACTGAAAACTATTCTCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp ANA-3 | Shewana3_2671 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-4 | Shewmr4_2505 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-7 | Shewmr7_2573 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella baltica OS155 | Sbal_1594 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella denitrificans OS217 | Sden_2415 | -116 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2617 | -111 | 5.1 | AACTGAAAACTATTCTCGTTA |
| Shewanella amazonensis SB2B | Sama_1214 | -119 | 5.6 | AATTGAAAATTATTATCGTTA |
| Shewanella loihica PV-4 | Shew_2518 | -192 | 5.8 | CAATGAAAATGGTTCTCATTT |
| -123 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -191 | 5.1 | AAATAGTAACCATTCTTAATT |
| -126 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -126 | 5.7 | AATTGAAAATTATTATCGTTT |
| Shewanella piezotolerans WP3 | swp_3271 | -225 | 5.3 | AAATAATAACCATTACTATTT |
| -125 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -219 | 4.9 | GAGCGATAATCATTCTCATCT |
| -126 | 5.6 | AATTGAAAACTATTCTCGTTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -218 | 4.8 | TAGTGATAATCGTTCTCACAA |
| -125 | 5.6 | AATTGAAAACTATTATCGTTT | ||
|
Position: -102
Score: 5 Sequence: GATTGATAATCGTTGTTATTA
Locus tag: Sfri_3225
|
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| Sfri_3225 | -102 | 5 | GATTGATAATCGTTGTTATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3225 | -102 | 5 | GATTGATAATCGTTGTTATTA |
|
Position: -76
Score: 5.7 Sequence: CAATGATAACCGTTTTCATTT
Locus tag: Sfri_3324
|
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| Sfri_3324 | -76 | 5.7 | CAATGATAACCGTTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Shewanella oneidensis MR-1 | SO0583 | -55 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3295 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0646 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_0581 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_0582 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_3448 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella baltica OS155 | Sbal_0542 | -53 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella denitrificans OS217 | Sden_3217 | -99 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3324 | -76 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_3040 | -59 | 5.5 | TGATGAGAACGGTTTTTATTT |
| Shewanella pealeana ATCC 700345 | Spea_3555 | -58 | 5.8 | CATTGAGAATCATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3649 | -58 | 5.5 | CACTGAGAATCATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_0771 | -86 | 5.3 | GATTGATAACTATTCTCATCA |
| -57 | 5.6 | CATTGAGAATCGTTTTCATTT | ||
|
Position: -90
Score: 5.7 Sequence: AAATGATAATGATTTCTATTT
Locus tag: Sfri_3717
|
||||
| Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3064 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0603 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_3569 | -91 | 5.1 | AAATAACAATAACTATCATTA |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella denitrificans OS217 | Sden_3064 | -122 | 6.2 | AAATAATAATGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3717 | -90 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2549 | -195 | 5 | GATTGATAACGAATCTCAATA |
| -168 | 5.5 | GAGTGATAATTATTATCAATT | ||
| -91 | 5.6 | TAATGATAATCATTAGCAATA | ||
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
| Shewanella loihica PV-4 | Shew_3097 | -136 | 5.9 | AAATGATAACCATTCCCATTT |
|
Position: -309
Score: 5.8 Sequence: AAATGAGAATAATTATCAAAA
Locus tag: Sfri_3851
|
||||
| Sfri_3851 | -309 | 5.8 | AAATGAGAATAATTATCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_3851 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella denitrificans OS217 | Sden_0609 | -101 | 5.3 | AAACGCTAACAATTCTCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3851 | -309 | 5.8 | AAATGAGAATAATTATCAAAA |
| Shewanella piezotolerans WP3 | swp_0083 | -206 | 5.6 | AAATGATAATTATTACGATTT |
| -46 | 5 | AAATGAGAACAATTGGCATCC | ||
|
Position: -80
Score: 5.3 Sequence: AAACGAGACTGATTATCATTT
Locus tag: Sfri_3875
|
||||
| Sfri_3875 | -80 | 5.3 | AAACGAGACTGATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4700 | ||||
| Ortholog function: Hypothetical outer membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4700 | -86 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp ANA-3 | Shewana3_4052 | -86 | 4.8 | AAATCGAATCCATTCTCATTA |
| Shewanella sp MR-4 | Shewmr4_3843 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp MR-7 | Shewmr7_3936 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella baltica OS155 | Sbal_0123 | -86 | 4.5 | AAATCGAATCAATTCGCATTA |
| Shewanella denitrificans OS217 | Sden_3594 | -123 | 4.7 | AAATAAGACTGGTTTGTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3875 | -80 | 5.3 | AAACGAGACTGATTATCATTT |
| Shewanella loihica PV-4 | Shew_3658 | -83 | 5.3 | AAATGCAACCAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4066 | 7 | 5 | AAATACGAGCTATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0192 | -87 | 4.4 | AAATACGTCCCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_4927 | -86 | 5 | AAATACAACCGATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0144 | -97 | 5.5 | AAATGGGAAGTGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0123 | -85 | 5.2 | AAATACAAAGCGTTATCATTT |
|
Position: -46
Score: 6 Sequence: TAATGAGAACTGTTATCATTT
Locus tag: Sfri_4031
|
||||
| Sfri_4031 | -46 | 6 | TAATGAGAACTGTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4740 | ||||
| Ortholog function: Conserved hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4740 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3921 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp W3-18-1 | Sputw3181_4047 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp ANA-3 | Shewana3_4124 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-4 | Shewmr4_3919 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-7 | Shewmr7_4011 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella baltica OS155 | Sbal_4341 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella denitrificans OS217 | Sden_3706 | -50 | 6 | TATTGATAACGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4031 | -46 | 6 | TAATGAGAACTGTTATCATTT |
| Shewanella amazonensis SB2B | Sama_3636 | -50 | 5.9 | AAGTGATAACTATTATCATTT |
| Shewanella loihica PV-4 | Shew_3815 | -46 | 6.5 | AAATGATAATAATTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4226 | -47 | 5.9 | AAATGAGAAGCGTTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4274 | -47 | 6.3 | AAATGATAACCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_5137 | -46 | 6.1 | AAATGATAATCGTTATCATCT |
| Shewanella sediminis HAW-EB3 | Ssed_4479 | -47 | 6.1 | AGATGAGAATAGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4887 | -50 | 6.3 | AAATGAGAACCATTATCATTT |
|
Position: -106
Score: 5.6 Sequence: TAATGATAATGGTTTGCATTA
Locus tag: Sfri_4035
|
||||
| Sfri_4035 | -106 | 5.6 | TAATGATAATGGTTTGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_4035 | ||||
| Ortholog function: Conserved hypothetical signal peptide protein, possibly porin | ||||
| Shewanella baltica OS155 | Sbal_2014 | -93 | 5.4 | AAATGCGAATTGTTTGCATTA |
| Shewanella denitrificans OS217 | Sden_0638 | -91 | 5.1 | AAATACGAATAGTTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4035 | -106 | 5.6 | TAATGATAATGGTTTGCATTA |
| Shewanella amazonensis SB2B | Sama_0589 | -84 | 5.1 | CAATGCGAATCGTTTGCATTT |
| Shewanella loihica PV-4 | Shew_3120 | -84 | 5.7 | TAATGATAATAGTTTGCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0712 | -82 | 5.6 | TAATGATAACGATTTGCATTA |
| Shewanella piezotolerans WP3 | swp_4367 | -81 | 6 | AAATGAGAATAATTTGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3889 | -83 | 5.6 | AAATGATAACCGTTTGCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3788 | -83 | 5.4 | GAATGATAACAATTTGCATTA |
|
Position: -68
Score: 5.4 Sequence: AAATGGAAACGCTTCTCATTT
Locus tag: Sfri_4042
|
||||
| Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -116 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_4127 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-4 | Shewmr4_3922 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella baltica OS155 | Sbal_4363 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT |
| Shewanella amazonensis SB2B | Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT |
| Shewanella loihica PV-4 | Shew_3841 | -69 | 6 | AAATAAAAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -68 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella piezotolerans WP3 | swp_5150 | -68 | 5.6 | GAATAAAAACAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4483 | -66 | 6 | AAATAAAAACGATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -67 | 6.2 | AAATAAAAATAATTCTCATTT |