Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Shewanella frigidimarina NCIMB 400

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella frigidimarina NCIMB 400
Orthologous TF(s) Sfri_0586, Sfri_2338
Regulated genes 22
Built upon 505 sites [see more]
Predicted regulatory interactions in Shewanella frigidimarina NCIMB 400
Locus tag Position Score Sequence
Position: -75
Score: 5.7
Sequence: AAATGAGAATAGTTTCCATTA
Locus tag: Sfri_0391
Sfri_0391 -75 5.7 AAATGAGAATAGTTTCCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_1590
Ortholog function: TonB-dependent siderophore receptor
Shewanella putrefaciens CN-32 Sputcn32_1590 -101 6 AAATGAGAATTATTGTCATCT
Shewanella sp W3-18-1 Sputw3181_2432 -101 6 AAATGAGAATTATTGTCATCT
Shewanella sp ANA-3 Shewana3_2551 -99 6 AAATGAGAATTATTGTCATCT
Shewanella sp MR-4 Shewmr4_2386 -98 6.2 AAATGAGAATTATTGTCATTT
Shewanella sp MR-7 Shewmr7_2458 -98 5.5 AAATGAGAATTATTGTCACCT
Shewanella frigidimarina NCIMB 400 Sfri_0391 -75 5.7 AAATGAGAATAGTTTCCATTA
Position: -54
Score: 5.9
Sequence: TAATGATAATGAATATCATTA
Locus tag: Sfri_0392
Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -103
Score: 5.8
Sequence: AAATGATAATGATTTGTATTT
Locus tag: Sfri_0611
Sfri_0611 -103 5.8 AAATGATAATGATTTGTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3914
Ortholog function: TonB-dependent siderophore receptor
Shewanella frigidimarina NCIMB 400 Sfri_0611 -103 5.8 AAATGATAATGATTTGTATTT
Position: -67
Score: 5.9
Sequence: AATTGATAACCATTATCAATT
Locus tag: Sfri_0636
Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
Position: -78
Score: 5.6
Sequence: TAATGCGAATCGTTATCAATT
Locus tag: Sfri_0810
Sfri_0810 -78 5.6 TAATGCGAATCGTTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_0810
Ortholog function: Hypothetical protein
Shewanella denitrificans OS217 Sden_0721 -74 5.8 TAATGCAAATTGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0810 -78 5.6 TAATGCGAATCGTTATCAATT
Shewanella loihica PV-4 Shew_0675 -77 6 TAATGCAAATTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_0670 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3528 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella piezotolerans WP3 swp_4049 -86 5.8 TAATGCAAATCGTTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3793 -76 5.1 TAATGCAAACGATTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_0790 -79 5.8 TAATGAAAACGATTCGCATTT
Position: -121
Score: 6
Sequence: TAATGATAATAGTTATCAATT
Locus tag: Sfri_0957
Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin subunit 2
Shewanella oneidensis MR-1 SO1111 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0948 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3228 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0946 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0944 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0982 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0932 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0990 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2873 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3095 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3179 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3608 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -116
Score: 6
Sequence: AATTGATAACTATTCTCATTA
Locus tag: Sfri_2008
Sfri_2008 -116 6 AATTGATAACTATTCTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2008
Ortholog function: Hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_1997 -63 5.9 TGTTGATAATAATTATCATTT
Shewanella sp MR-4 Shewmr4_2003 -59 5.7 TGTTGATAACTATTCTCATTT
Shewanella sp MR-7 Shewmr7_1972 -59 5.7 TGTTGATAACTATTCTCATTT
Shewanella baltica OS155 Sbal_4484 -165 4.7 AAATAAAAATAATGATCACAT
-63 5.6 TGTTGATAACAGTTATCATTT
Shewanella baltica OS155 Sbal_2198 -165 4.7 AAATAAAAATAATGATCACAT
-63 5.6 TGTTGATAACAGTTATCATTT
Shewanella denitrificans OS217 Sden_1854 -36 6 AAATAAAAACCATTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_2008 -116 6 AATTGATAACTATTCTCATTA
Shewanella amazonensis SB2B Sama_1788 -52 6 ATATGATAACTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_2212 -117 6.1 TATTGATAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_2195 -62 5.9 TGTTGATAATCATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_2208 -64 5.8 CATTGATAATCATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_2428 -62 5.9 AGTTGATAACCATTCTCATTT
Position: -32
Score: 5.6
Sequence: TAATGGTAATCGTTATCATTA
Locus tag: Sfri_2150
Sfri_2150 -32 5.6 TAATGGTAATCGTTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2426
Ortholog function: Two component transcriptional regulator, Winged helix family
Shewanella oneidensis MR-1 SO2426 -2 5.6 AAATGATATTGATTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_1941 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp W3-18-1 Sputw3181_2064 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp ANA-3 Shewana3_1959 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-4 Shewmr4_1904 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-7 Shewmr7_2074 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella baltica OS155 Sbal_2050 -32 5.1 AAATGATATAGATTCTCGTTT
Shewanella denitrificans OS217 Sden_1906 10 5.6 TAATGAAAATGGTTATCGTTT
Shewanella frigidimarina NCIMB 400 Sfri_2150 -32 5.6 TAATGGTAATCGTTATCATTA
Shewanella amazonensis SB2B Sama_1718 -32 4.8 GAATAACAACCGTTCGCATTT
Shewanella loihica PV-4 Shew_1936 -31 6 TAATGATAACTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_2236 -34 5.3 TAATGCGAATTATTCGTATTT
Shewanella halifaxensis HAW-EB4 Shal_2220 -34 5.6 AAATGAAAATGATTCGCATTG
Shewanella piezotolerans WP3 swp_2595 -9 5.5 CAATGATAATTGTTCGCATTT
Shewanella sediminis HAW-EB3 Ssed_2316 -34 5.5 AAATGATAACAGTTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_2294 -36 5.4 TGTTGATAATTGTTCGCATTT
Position: -30
Score: 5.4
Sequence: TATTGAAAATGATTATCAATG
Locus tag: Sfri_2159
Sfri_2159 -30 5.4 TATTGAAAATGATTATCAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1755
Ortholog function: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon
Shewanella oneidensis MR-1 SO1755 -30 5.3 AATTGAAAATGATTTTCACTG
Shewanella putrefaciens CN-32 Sputcn32_1454 -30 4.8 GATTGCAAATGATTTTCAATG
Shewanella sp W3-18-1 Sputw3181_2648 -30 4.8 GATTGCAAATGATTTTCAATG
Shewanella sp ANA-3 Shewana3_2707 -30 4.9 GATTGAAAATGATTTTCACTG
Shewanella sp MR-4 Shewmr4_2541 -30 4.9 GATTGAAAATGATTTTCACTG
Shewanella sp MR-7 Shewmr7_2608 -31 4.9 GATTGAAAATGATTTTCACTG
Shewanella baltica OS155 Sbal_1561 -30 4.8 GATTGCAAATGATTTTCAATG
Shewanella frigidimarina NCIMB 400 Sfri_2159 -30 5.4 TATTGAAAATGATTATCAATG
Shewanella sediminis HAW-EB3 Ssed_1517 -67 5.3 AAATGAAAATCATTTGTAGTT
Shewanella woodyi ATCC 51908 Swoo_3151 -66 5.2 CAATGCTAATGATTTTCAACT
Position: -52
Score: 5.6
Sequence: TTATGATAATCATTATCATTC
Locus tag: Sfri_2440
Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
Position: -184
Score: 5.6
Sequence: TATTGCTAATGATTATCATTA
Position: -107
Score: 5.5
Sequence: AATTGATAATAATTATCACTC
Locus tag: Sfri_2548
Sfri_2548 -184 5.6 TATTGCTAATGATTATCATTA
-107 5.5 AATTGATAATAATTATCACTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: COG3182
Ortholog function: PepSY-associated TM helix domain-containing protein
Shewanella putrefaciens CN-32 Sputcn32_1842 -90 5.7 AATTGAAAACAATTATCAATA
-64 5.2 TATTGATAACAATTCGTATTA
Shewanella sp W3-18-1 Sputw3181_2167 -90 5.7 AATTGAAAACAATTATCAATA
-64 5.2 TATTGATAACAATTCGTATTA
Shewanella sp ANA-3 Shewana3_2196 -66 5.5 TATTGATAACAATTCGCATTA
Shewanella sp MR-4 Shewmr4_2076 -65 5.5 TATTGATAACAATTCGCATTA
Shewanella sp MR-7 Shewmr7_1899 -65 5.5 TATTGATAACAATTCGCATTA
Shewanella baltica OS155 Sbal_2134 -64 5.4 TATTGATAACAATTTGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_2548 -184 5.6 TATTGCTAATGATTATCATTA
-107 5.5 AATTGATAATAATTATCACTC
-80 5 TATTGAGATTCGTTATCAATC
Position: -168
Score: 5.5
Sequence: GAGTGATAATTATTATCAATT
Position: -91
Score: 5.6
Sequence: TAATGATAATCATTAGCAATA
Locus tag: Sfri_2549
Sfri_2549 -168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Position: -111
Score: 5.1
Sequence: AACTGAAAACTATTCTCGTTA
Locus tag: Sfri_2617
Sfri_2617 -111 5.1 AACTGAAAACTATTCTCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella putrefaciens CN-32 Sputcn32_1480 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp W3-18-1 Sputw3181_2621 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp ANA-3 Shewana3_2671 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-4 Shewmr4_2505 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-7 Shewmr7_2573 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella baltica OS155 Sbal_1594 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella denitrificans OS217 Sden_2415 -116 5.4 AATTGAAAACTATTATCGTTA
Shewanella frigidimarina NCIMB 400 Sfri_2617 -111 5.1 AACTGAAAACTATTCTCGTTA
Shewanella amazonensis SB2B Sama_1214 -119 5.6 AATTGAAAATTATTATCGTTA
Shewanella loihica PV-4 Shew_2518 -192 5.8 CAATGAAAATGGTTCTCATTT
-123 5.7 AATTGAAAATTATTATCGTTT
Shewanella pealeana ATCC 700345 Spea_2691 -191 5.1 AAATAGTAACCATTCTTAATT
-126 5.7 AATTGAAAATTATTATCGTTT
Shewanella halifaxensis HAW-EB4 Shal_2777 -126 5.7 AATTGAAAATTATTATCGTTT
Shewanella piezotolerans WP3 swp_3271 -225 5.3 AAATAATAACCATTACTATTT
-125 5.7 AATTGAAAATTATTATCGTTT
Shewanella sediminis HAW-EB3 Ssed_1531 -219 4.9 GAGCGATAATCATTCTCATCT
-126 5.6 AATTGAAAACTATTCTCGTTT
Shewanella woodyi ATCC 51908 Swoo_3123 -218 4.8 TAGTGATAATCGTTCTCACAA
-125 5.6 AATTGAAAACTATTATCGTTT
Position: -102
Score: 5
Sequence: GATTGATAATCGTTGTTATTA
Locus tag: Sfri_3225
Sfri_3225 -102 5 GATTGATAATCGTTGTTATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: omp
Ortholog function: TonB-dependent siderophore receptor
Shewanella frigidimarina NCIMB 400 Sfri_3225 -102 5 GATTGATAATCGTTGTTATTA
Position: -76
Score: 5.7
Sequence: CAATGATAACCGTTTTCATTT
Locus tag: Sfri_3324
Sfri_3324 -76 5.7 CAATGATAACCGTTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Shewanella oneidensis MR-1 SO0583 -55 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3295 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp W3-18-1 Sputw3181_0646 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp ANA-3 Shewana3_0581 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp MR-4 Shewmr4_0582 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp MR-7 Shewmr7_3448 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella baltica OS155 Sbal_0542 -53 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella denitrificans OS217 Sden_3217 -99 5.7 CAATGATAACCGTTTTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3324 -76 5.7 CAATGATAACCGTTTTCATTT
Shewanella amazonensis SB2B Sama_3040 -59 5.5 TGATGAGAACGGTTTTTATTT
Shewanella pealeana ATCC 700345 Spea_3555 -58 5.8 CATTGAGAATCATTTTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3649 -58 5.5 CACTGAGAATCATTTTCATTT
Shewanella piezotolerans WP3 swp_0771 -86 5.3 GATTGATAACTATTCTCATCA
-57 5.6 CATTGAGAATCGTTTTCATTT
Position: -90
Score: 5.7
Sequence: AAATGATAATGATTTCTATTT
Locus tag: Sfri_3717
Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Position: -309
Score: 5.8
Sequence: AAATGAGAATAATTATCAAAA
Locus tag: Sfri_3851
Sfri_3851 -309 5.8 AAATGAGAATAATTATCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_3851
Ortholog function: TonB-dependent siderophore receptor
Shewanella denitrificans OS217 Sden_0609 -101 5.3 AAACGCTAACAATTCTCATTA
Shewanella frigidimarina NCIMB 400 Sfri_3851 -309 5.8 AAATGAGAATAATTATCAAAA
Shewanella piezotolerans WP3 swp_0083 -206 5.6 AAATGATAATTATTACGATTT
-46 5 AAATGAGAACAATTGGCATCC
Position: -80
Score: 5.3
Sequence: AAACGAGACTGATTATCATTT
Locus tag: Sfri_3875
Sfri_3875 -80 5.3 AAACGAGACTGATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: Hypothetical outer membrane protein
Shewanella oneidensis MR-1 SO4700 -86 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp ANA-3 Shewana3_4052 -86 4.8 AAATCGAATCCATTCTCATTA
Shewanella sp MR-4 Shewmr4_3843 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp MR-7 Shewmr7_3936 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella baltica OS155 Sbal_0123 -86 4.5 AAATCGAATCAATTCGCATTA
Shewanella denitrificans OS217 Sden_3594 -123 4.7 AAATAAGACTGGTTTGTATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -80 5.3 AAACGAGACTGATTATCATTT
Shewanella loihica PV-4 Shew_3658 -83 5.3 AAATGCAACCAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4066 7 5 AAATACGAGCTATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_0192 -87 4.4 AAATACGTCCCATTATCATTT
Shewanella piezotolerans WP3 swp_4927 -86 5 AAATACAACCGATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_0144 -97 5.5 AAATGGGAAGTGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_0123 -85 5.2 AAATACAAAGCGTTATCATTT
Position: -46
Score: 6
Sequence: TAATGAGAACTGTTATCATTT
Locus tag: Sfri_4031
Sfri_4031 -46 6 TAATGAGAACTGTTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4740
Ortholog function: Conserved hypothetical inner membrane protein
Shewanella oneidensis MR-1 SO4740 -60 6 TAATGAGAATTGTTATCATCT
Shewanella putrefaciens CN-32 Sputcn32_3921 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp W3-18-1 Sputw3181_4047 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp ANA-3 Shewana3_4124 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-4 Shewmr4_3919 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-7 Shewmr7_4011 -60 6 TAATGAGAATTGTTATCATCT
Shewanella baltica OS155 Sbal_4341 -59 6 TAATGAGAATTGTTATCATCT
Shewanella denitrificans OS217 Sden_3706 -50 6 TATTGATAACGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4031 -46 6 TAATGAGAACTGTTATCATTT
Shewanella amazonensis SB2B Sama_3636 -50 5.9 AAGTGATAACTATTATCATTT
Shewanella loihica PV-4 Shew_3815 -46 6.5 AAATGATAATAATTATCATTT
Shewanella pealeana ATCC 700345 Spea_4226 -47 5.9 AAATGAGAAGCGTTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_4274 -47 6.3 AAATGATAACCATTATCATTT
Shewanella piezotolerans WP3 swp_5137 -46 6.1 AAATGATAATCGTTATCATCT
Shewanella sediminis HAW-EB3 Ssed_4479 -47 6.1 AGATGAGAATAGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4887 -50 6.3 AAATGAGAACCATTATCATTT
Position: -106
Score: 5.6
Sequence: TAATGATAATGGTTTGCATTA
Locus tag: Sfri_4035
Sfri_4035 -106 5.6 TAATGATAATGGTTTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein, possibly porin
Shewanella baltica OS155 Sbal_2014 -93 5.4 AAATGCGAATTGTTTGCATTA
Shewanella denitrificans OS217 Sden_0638 -91 5.1 AAATACGAATAGTTTGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_4035 -106 5.6 TAATGATAATGGTTTGCATTA
Shewanella amazonensis SB2B Sama_0589 -84 5.1 CAATGCGAATCGTTTGCATTT
Shewanella loihica PV-4 Shew_3120 -84 5.7 TAATGATAATAGTTTGCATTA
Shewanella pealeana ATCC 700345 Spea_0712 -82 5.6 TAATGATAACGATTTGCATTA
Shewanella piezotolerans WP3 swp_4367 -81 6 AAATGAGAATAATTTGCATTA
Shewanella sediminis HAW-EB3 Ssed_3889 -83 5.6 AAATGATAACCGTTTGCATTA
Shewanella woodyi ATCC 51908 Swoo_3788 -83 5.4 GAATGATAACAATTTGCATTA
Position: -68
Score: 5.4
Sequence: AAATGGAAACGCTTCTCATTT
Locus tag: Sfri_4042
Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: TonB-dependent siderophore receptor
Shewanella oneidensis MR-1 SO4743 -116 5.7 AAATAAAAACAATTCTTATTT
Shewanella putrefaciens CN-32 Sputcn32_3953 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_4050 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp ANA-3 Shewana3_4127 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-4 Shewmr4_3922 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-7 Shewmr7_4014 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella baltica OS155 Sbal_4363 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Shewanella amazonensis SB2B Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Shewanella loihica PV-4 Shew_3841 -69 6 AAATAAAAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4236 -69 6 AAATAAAAATAGTTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_4287 -68 6 AAATAAAAATAGTTCTCATTT
Shewanella piezotolerans WP3 swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_4894 -67 6.2 AAATAAAAATAATTCTCATTT
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