Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: Crp - Shewanellaceae
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) No orthologous TFs found
Regulated genes 64
Built upon 2713 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -125
Score: 4.1
Sequence: TTTAGTGATTATTTTAACAAAC
Locus tag: PTD2_02861
PTD2_02861 -125 4.1 TTTAGTGATTATTTTAACAAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mshH
Ortholog function: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Shewanella oneidensis MR-1 SO4116 -318 4.4 TATTGTAATTTAGTCAACATTT
-132 4.3 AAATGTGACCTAATTGACGTAT
Shewanella putrefaciens CN-32 Sputcn32_0555 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp W3-18-1 Sputw3181_3617 -313 4 TATTGTAATTTAGCCAAAATTT
-114 3.8 GAATATGACAGGTTTCACGTTT
Shewanella sp ANA-3 Shewana3_3668 -312 4.2 TATTGTAATTTAATCAACATTT
-119 4.2 GGATATGATGGGTTTCACATTT
Shewanella sp MR-4 Shewmr4_3491 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella sp MR-7 Shewmr7_0461 -312 4.2 TATTGTAATTTAATCAACATTT
Shewanella denitrificans OS217 Sden_3352 -298 3.8 TCTTGTTATTTAAACAACATTT
-197 4.2 TAATGTGATGCATAGCAGCCTT
Shewanella frigidimarina NCIMB 400 Sfri_3756 -303 4.1 TATTGTTATTTAGACAAAATAA
Shewanella pealeana ATCC 700345 Spea_3773 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella halifaxensis HAW-EB4 Shal_3858 -196 3.8 TATAGCGATAAAGTTAAAAAAT
Shewanella woodyi ATCC 51908 Swoo_4422 -345 3.8 AAGTTTTATCTAGTTAACCCTT
Position: -145
Score: 3.8
Sequence: AAACTTAATCTAAATCAAGTTT
Position: -95
Score: 3.7
Sequence: TAACTTGATCTAGAACAGGTTT
Locus tag: PTD2_11539
PTD2_11539 -145 3.8 AAACTTAATCTAAATCAAGTTT
-95 3.7 TAACTTGATCTAGAACAGGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W precursor
Shewanella oneidensis MR-1 SO1673 -161 4.4 TAGCGTGATTTGGATCTCAATG
-110 4.4 AATTTTGATTTGGATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_1392 -211 4.2 ATAAATGCTGCGTATCACATAA
-158 4 TTTCGTGATTAGGATCTCAAGT
Shewanella sp W3-18-1 Sputw3181_2709 -211 4.2 ATAAATGCTGCGTATCACATAA
Shewanella sp ANA-3 Shewana3_2775 -107 3.8 AATCTTGATTTGGATCAATAAG
Shewanella baltica OS155 Sbal_1490 -158 4 TTTCGTGATTCAGCTCCCATGT
Shewanella denitrificans OS217 Sden_2589 -157 4.2 TTTTGTGAATTAGATCAAGACT
Shewanella frigidimarina NCIMB 400 Sfri_1334 -232 3.9 TCGCTTGATCAACCTCACAAAA
-170 3.9 TTTTGTGATCCAAATCAACAGC
Shewanella amazonensis SB2B Sama_1371 -56 4 AATTGTTACGGACGTAACAGAA
Shewanella pealeana ATCC 700345 Spea_2787 -159 4.4 TATTGTGATCTAGATCCTTTTA
Shewanella halifaxensis HAW-EB4 Shal_2887 -161 5.1 AAATGTGATCTTCATCGCCTTT
-111 4.8 ATTTTTGATTCAGGTCAAATTT
Shewanella piezotolerans WP3 swp_3395 -214 4 TTGCGTGTTGTATGTCACCAAA
-161 4.4 AAATGTGATCGCGATCACTGCT
Shewanella sediminis HAW-EB3 Ssed_1469 -158 4.5 TTTTGTGAGCTTGGTCATGTAT
-108 3.7 TTAATTGATCTGGATCAATAAG
Shewanella woodyi ATCC 51908 Swoo_3207 -211 4.3 AATTATGACGTCGCTCACTAAA
-158 4.5 AAGTGTGAGTTCGATCAAGTAT
-108 3.9 TTTATTGATTTGGATCAATAAA
Position: -112
Score: 4.1
Sequence: ATTTTTTAACGAGATCACAGAT
Locus tag: PTD2_13189
PTD2_13189 -112 4.1 ATTTTTTAACGAGATCACAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2797
Ortholog function: glutaredoxin
Shewanella oneidensis MR-1 SO2797 -70 4.5 TTATGAGAGCAGAATCACATTT
Shewanella sp ANA-3 Shewana3_2579 -102 4.7 TTATGCGAGCGGAATCACATTT
Shewanella sp MR-4 Shewmr4_2417 -101 4.7 TTATGCGAGCGGAATCACATTT
Shewanella sp MR-7 Shewmr7_2487 -88 4.8 TTATGCGAGCGAAATCACATTT
Shewanella sediminis HAW-EB3 Ssed_1830 -53 3.8 TTCTGTGACATGGGTTACACTC
Position: -24
Score: 3.5
Sequence: TAATTTGAGGTAATCAAAACTA
Locus tag: PTD2_13514
PTD2_13514 -24 3.5 TAATTTGAGGTAATCAAAACTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purH
Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewanella oneidensis MR-1 SO0442 -180 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella putrefaciens CN-32 Sputcn32_3401 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp W3-18-1 Sputw3181_0542 -193 4 TATTGTGAAATCACGCAGAAAA
Shewanella sp ANA-3 Shewana3_0441 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-4 Shewmr4_0445 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sp MR-7 Shewmr7_3584 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella baltica OS155 Sbal_0420 -195 4 TATTGTGAAATCACGCAGAAAA
Shewanella frigidimarina NCIMB 400 Sfri_0493 -195 3.9 TATTGTGAAATCACACAGAAAA
Shewanella amazonensis SB2B Sama_0395 -194 4 TATTGTGAAATCACGCAGAAAA
Shewanella loihica PV-4 Shew_3412 -182 4 TATTGTGAAATCGCACAGAAAA
Shewanella pealeana ATCC 700345 Spea_0432 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella halifaxensis HAW-EB4 Shal_0488 -182 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella piezotolerans WP3 swp_4724 -181 4.1 TATTGTGAAATCGCGCAGAAAA
Shewanella sediminis HAW-EB3 Ssed_0444 -282 4 GAGTGTGACGCTCTGCACAAAT
-191 4.2 TATTGTGAAATCGTGCAGAAAA
Shewanella woodyi ATCC 51908 Swoo_0296 -192 3.6 TATTGTGAAATCACATATAAAT
Position: -145
Score: 3.9
Sequence: TTTTATGATACAGACCGCAAAG
Locus tag: PTD2_08509
PTD2_08509 -145 3.9 TTTTATGATACAGACCGCAAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: mdh
Ortholog function: malate dehydrogenase (EC 1.1.1.37)
Shewanella oneidensis MR-1 SO0770 -47 4.3 AAATTAGATCCATGTCACACAT
Shewanella putrefaciens CN-32 Sputcn32_3219 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp W3-18-1 Sputw3181_0722 -46 4 AAACTAGATCCATGTCACACAT
Shewanella sp ANA-3 Shewana3_3509 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-4 Shewmr4_3339 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella sp MR-7 Shewmr7_0614 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella baltica OS155 Sbal_0609 -46 4.3 AAATTAGATCCATGTCACACAT
Shewanella frigidimarina NCIMB 400 Sfri_3173 -45 4.2 AATTTAGATCTATGTCACAAAC
Shewanella amazonensis SB2B Sama_0672 -46 3.8 TTTGAGGATCTACCTCACAAAT
Shewanella loihica PV-4 Shew_0867 -47 4.5 AATCTAGATCTATATCACATAA
Shewanella halifaxensis HAW-EB4 Shal_0903 -46 3.9 AAGATGGATCTGAATCACAAAA
Shewanella piezotolerans WP3 swp_4100 -46 3.9 AAAACAGATCTAAATCACAAAA
Shewanella sediminis HAW-EB3 Ssed_0952 -136 4.1 TTTATTGATGTAGAACAAAAAT
Shewanella woodyi ATCC 51908 Swoo_1002 -47 3.8 AATGTAGACCTACATCACAAAA
Position: -226
Score: 4.4
Sequence: TAATTTGATTGAAGTCATAATT
Locus tag: PTD2_21702
PTD2_21702 -226 4.4 TAATTTGATTGAAGTCATAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccoN
Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewanella oneidensis MR-1 SO2364 -173 4.3 TTTTTTGACATGGCTCAAGTAT
-125 4.1 AAATGTGAAGGATAACGCATTG
Shewanella putrefaciens CN-32 Sputcn32_1959 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp W3-18-1 Sputw3181_2046 -171 4.2 TTTTTTGACATTGCTCAAGTAT
Shewanella sp ANA-3 Shewana3_2107 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-4 Shewmr4_2006 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella sp MR-7 Shewmr7_1969 -171 4.3 TTTTTTGACATGGCTCAAGTAT
Shewanella baltica OS155 Sbal_2201 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella baltica OS155 Sbal_4487 -173 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella denitrificans OS217 Sden_1851 -182 4.7 TTTTTTGATGTAGCTCAAGTAT
Shewanella frigidimarina NCIMB 400 Sfri_2010 -186 4.4 TTTTTTGACTTAGCTCAAGTAT
Shewanella amazonensis SB2B Sama_1791 -180 4.3 TTTTTTGACACAGCTCAAGTAT
Shewanella loihica PV-4 Shew_1985 -178 4.5 TTTTTTGATATTGCTCAAGTAT
Shewanella pealeana ATCC 700345 Spea_2214 -219 4.1 TACCTTGATCTAGATCAACTTA
-176 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella halifaxensis HAW-EB4 Shal_2197 -221 4.5 AGATTTGATCTAGATCAACTTT
-178 4.6 TTTTTTGATATAGCTCAAGTAT
Shewanella piezotolerans WP3 swp_2572 -221 4.3 TAGCTTGATCTAGATCAACTTT
-178 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella sediminis HAW-EB3 Ssed_2211 -177 4.4 TTTTTTGACATAGCTCAAGTAT
Shewanella woodyi ATCC 51908 Swoo_2425 -220 4.3 TAGCTTGATCTAGATCAACTTT
-177 4.4 TTTTTTGACATAGCTCAAGTAT
Position: -37
Score: 3.7
Sequence: TTATGTGAATTTAAAAATAAAA
Locus tag: PTD2_17305
PTD2_17305 -37 3.7 TTATGTGAATTTAAAAATAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gloA
Ortholog function: lactoylglutathione lyase (EC 4.4.1.5)
Shewanella putrefaciens CN-32 Sputcn32_2101 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp W3-18-1 Sputw3181_1911 -120 3.8 TTTTGTGAGCAACAACCAATTT
-4 3.8 ATTAATGATCTCGTTAACGCAA
Shewanella sp ANA-3 Shewana3_2232 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.4 CAAAGTGACGTAGCTCACAAAG
Shewanella sp MR-4 Shewmr4_2107 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella sp MR-7 Shewmr7_1867 -205 4 TTTTGTGAGCAAGAGCTAAATA
-153 4.8 CAAAGTGATACAGCTCACATTA
Shewanella baltica OS155 Sbal_2269 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella baltica OS155 Sbal_4555 -196 4 TTTTGTGAGCGACAGCCAATTT
Shewanella frigidimarina NCIMB 400 Sfri_2179 -101 4.6 AAATGTGAACTAAAGCAAAATT
Shewanella frigidimarina NCIMB 400 Sfri_2098 -213 3.8 AAACGTTAAATCCATTACATTA
-41 3.7 TTTAATGATGCGATTCAGAGAT
Shewanella amazonensis SB2B Sama_1837 -96 4.3 AACTGTGAGTTGCTTCAGATTT
Shewanella halifaxensis HAW-EB4 Shal_1924 -95 4 TAAATTGATCTCGCTCAATTTT
Shewanella sediminis HAW-EB3 Ssed_2709 -312 3.8 TTTTGTAATTTTTTAAACAGTA
Shewanella woodyi ATCC 51908 Swoo_2563 -243 3.8 TTTTATGACTCTATTAATATAA
Position: -338
Score: 4.3
Sequence: TATTGTAATATCAATAAAATAA
Locus tag: PTD2_17400
PTD2_17400 -338 4.3 TATTGTAATATCAATAAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4139
Ortholog function: tetratricopeptide repeat family protein
Shewanella oneidensis MR-1 SO4139 -162 4.3 TTACATGATACGCTTCACAATG
Shewanella putrefaciens CN-32 Sputcn32_0538 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp W3-18-1 Sputw3181_3634 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp ANA-3 Shewana3_3685 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-4 Shewmr4_3510 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella sp MR-7 Shewmr7_0442 -94 4.3 TTACATGATACGCTTCACAATG
Shewanella baltica OS155 Sbal_3857 -95 4.5 TTACATGATACGCTTCACACAT
Position: -25
Score: 3.6
Sequence: TGTTATGACAATGAGAACATTT
Locus tag: PTD2_17865
PTD2_17865 -25 3.6 TGTTATGACAATGAGAACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyaF
Ortholog function: NiFe hydrogenase assembly protein, HypF
Shewanella oneidensis MR-1 SO2094 -105 4 ATTCTTGATATGCATCAATAAT
Shewanella putrefaciens CN-32 Sputcn32_2093 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp W3-18-1 Sputw3181_1919 -167 3.7 AAATTAGATCTGCGTCATGTTA
-107 4 ATTCTTGATATACATCAATAAT
Shewanella sp ANA-3 Shewana3_1875 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-4 Shewmr4_1817 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella sp MR-7 Shewmr7_2160 -166 3.9 AAATTAGATCTGCATCATGTTA
-106 4.2 ATTCTTGATATGCATCAAGAAT
Shewanella baltica OS155 Sbal_1884 -229 3.9 TTAAGTGACCGATTTCATCCAA
-167 3.7 AAATTAGATCTACGTCATGTTA
-107 4.2 ATTCTTGATATACATCAAGAAT
Shewanella frigidimarina NCIMB 400 Sfri_2108 -174 3.8 TTTTGTTAACTTGATCAACATC
-168 4.4 TAACTTGATCAACATCATAAAT
Shewanella amazonensis SB2B Sama_1674 -172 3.4 AAGCATGACACACCTCATGTTA
Shewanella loihica PV-4 Shew_1760 -164 3.8 AAACTTGATCCAGCTCATAGCT
-103 3.7 AATGTTGACATACATCAACATT
Shewanella pealeana ATCC 700345 Spea_2028 -211 4.6 TTACGTGACCACGATCACCTTT
Shewanella halifaxensis HAW-EB4 Shal_2266 -212 5 TTACGTGATCTCCATCACCTTT
Shewanella sediminis HAW-EB3 Ssed_1903 -162 4 AAAGATGATCTAGTTCATATTG
Position: -70
Score: 3.8
Sequence: AATATTGATTTATTTAACTATT
Locus tag: PTD2_19295
PTD2_19295 -70 3.8 AATATTGATTTATTTAACTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Shewanella putrefaciens CN-32 Sputcn32_2269 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella sp W3-18-1 Sputw3181_1739 -66 3.8 TGCCGTGATTTATCTCCCAGTT
Shewanella baltica OS155 Sbal_2515 -66 3.8 TGCCGTGATTCACATCCCAGTT
Shewanella denitrificans OS217 Sden_2183 -274 3.7 TGGATTGATGCAAATTACAAAA
-186 3.8 AAGGGCGACAAACATCACAATT
Shewanella frigidimarina NCIMB 400 Sfri_2343 -74 4.1 ACGTGTGATGTAACTTACGTTA
-19 3.7 AAGTTTGAAAGGAATAACAATG
Shewanella amazonensis SB2B Sama_1427 -80 3.7 TTTTGTGACGACTGTCGCCGTG
Shewanella pealeana ATCC 700345 Spea_1788 -86 4.4 AACCGTGATCTGGATCACTGAT
Shewanella halifaxensis HAW-EB4 Shal_2489 -86 4.9 ATCTGTGATCTGGATCACCGAT
Shewanella piezotolerans WP3 swp_2949 -20 4.6 AACTGTGACCTAGTTCACGGAT
Shewanella sediminis HAW-EB3 Ssed_2814 -86 4.2 GATCGTGACCTGTGTCACAGTT
Shewanella woodyi ATCC 51908 Swoo_1837 -87 4.8 ATTTGTGATCTAAATCACGCCT
Position: -139
Score: 3.7
Sequence: AAAAGTTATTTTGTTAAGATAA
Locus tag: PTD2_14542
PTD2_14542 -139 3.7 AAAAGTTATTTTGTTAAGATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO0572
Ortholog function: enoyl-CoA hydratase (EC 4.2.1.17)
Shewanella oneidensis MR-1 SO0572 -102 4.4 TATTTTGACTCAAGTCAAAATT
Shewanella putrefaciens CN-32 Sputcn32_3304 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp W3-18-1 Sputw3181_0637 -102 4.3 TATTTTGACTAAGGTCAAAATT
Shewanella sp ANA-3 Shewana3_0572 -102 4.4 TATTTTGACTCATGTCAAAAAT
Shewanella sp MR-4 Shewmr4_0573 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella sp MR-7 Shewmr7_3457 -102 4.5 TATTTTGACGCATGTCAAAATT
Shewanella baltica OS155 Sbal_0533 -102 4.3 TATTTTGACTCAAGTCAAAAAA
Shewanella denitrificans OS217 Sden_0534 -100 3.7 ATTTTTGACTAGGGTCAATATT
Shewanella frigidimarina NCIMB 400 Sfri_3510 -237 4.2 CATTGTGATCAATGTCATATCA
Shewanella loihica PV-4 Shew_0454 -124 4.3 TATTTTGACGCCAGTCAAAAAA
Shewanella pealeana ATCC 700345 Spea_3709 -110 3.7 AAAAATGACCAATGTCATAATT
Shewanella halifaxensis HAW-EB4 Shal_3794 -110 3.9 TAAAATGATGAGTGTCATAATT
Shewanella piezotolerans WP3 swp_0563 -110 3.6 TTTATTGACGATAGTCAAAAAA
Shewanella sediminis HAW-EB3 Ssed_0623 -108 4.1 TTTTTTGACTGAAGTCAAACTT
Position: 21
Score: 4.1
Sequence: AAGTGTGAAGCCTGTCACGTTG
Locus tag: PTD2_15982
PTD2_15982 21 4.1 AAGTGTGAAGCCTGTCACGTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: phhB
Ortholog function: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Shewanella oneidensis MR-1 SO1667 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella putrefaciens CN-32 Sputcn32_1387 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp W3-18-1 Sputw3181_2714 -75 4.7 AAGTGTGAGGGAGTTAACAAAA
Shewanella sp ANA-3 Shewana3_2780 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-4 Shewmr4_2606 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella sp MR-7 Shewmr7_2673 -75 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella baltica OS155 Sbal_1485 -75 4.7 AAGTGTGAGGGAGTTAACAAAT
Shewanella denitrificans OS217 Sden_2594 -61 4.1 AATTGTGCGCCATGGCACACTA
Shewanella frigidimarina NCIMB 400 Sfri_1329 -74 4.5 AACTGTGAGGGAGTTAACAAAA
Shewanella amazonensis SB2B Sama_2221 -76 4.6 AAACGTGAGGCAGTTAACAAAA
Shewanella loihica PV-4 Shew_1436 -40 4.7 AAGTGTGATCCTGTTAACAAAC
Shewanella pealeana ATCC 700345 Spea_1449 -126 4.9 AACTGTGATCGGGTTAACAATT
Shewanella halifaxensis HAW-EB4 Shal_1532 -86 4.7 AACCGTGATCTAGTTAACAAAA
Shewanella piezotolerans WP3 swp_1651 -76 5 AACTGTGATCTGGTTAACAAAA
Shewanella sediminis HAW-EB3 Ssed_2929 -75 4.8 AACTGTGATGGAGTTAACAAAA
Shewanella woodyi ATCC 51908 Swoo_1716 -74 4.7 AAGTGTGAAGTGGTTAACAAAA
Position: -97
Score: 4.1
Sequence: TTTGATGATTCACATCAAATAA
Locus tag: PTD2_10313
PTD2_10313 -97 4.1 TTTGATGATTCACATCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiA-1
Ortholog function: ribosomal subunit interface protein
Shewanella oneidensis MR-1 SO3403 -142 4.7 TTCTTTGATAGGTCTCACATTT
Shewanella putrefaciens CN-32 Sputcn32_2725 -145 4.9 TTCTTTGATGTAACTCACATTT
Shewanella sp W3-18-1 Sputw3181_1287 -145 4.9 TTCTTTGATGTAACTCACATTT
Shewanella sp ANA-3 Shewana3_1151 -142 4.6 TTCTTTGATAAGTCTCACATTT
Shewanella sp MR-4 Shewmr4_1150 -142 4.6 TTCTTTGATAAATCTCACATTT
Shewanella sp MR-7 Shewmr7_1221 -142 5 TTTTTTGATAAATCTCACATTT
Shewanella baltica OS155 Sbal_1239 -222 4.2 TTTTGTGATTGATTTATTATTA
-144 4.3 CTTCTTGATGGCGGTCACATTT
Shewanella halifaxensis HAW-EB4 Shal_1258 -319 3.9 AAGAGTGATAAAAATCAAGCTA
-230 3.8 TATCCTGATGAATGCCACAATT
Shewanella piezotolerans WP3 swp_3408 -177 4.1 TGATGTGATAAAAAGCACTCAT
Position: -158
Score: 3.9
Sequence: TATCATGAAAAAAATCACAGAA
Locus tag: PTD2_16786
PTD2_16786 -158 3.9 TATCATGAAAAAAATCACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pckA
Ortholog function: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewanella oneidensis MR-1 SO0162 -150 3.8 CTCAATGATCCAGCTCACACTT
Shewanella putrefaciens CN-32 Sputcn32_3571 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp W3-18-1 Sputw3181_3708 -151 4 CACCATGATCCAGTTCACACTT
Shewanella sp ANA-3 Shewana3_0147 -151 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-4 Shewmr4_0152 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella sp MR-7 Shewmr7_0147 -149 3.8 CTCAATGATCCAGCTCACACTT
Shewanella amazonensis SB2B Sama_0165 -145 4.1 TTTTCAGATCCGGCTCACACAT
Shewanella loihica PV-4 Shew_3623 -128 4.6 TTTCGCGATCTTCCTCACACAT
Shewanella pealeana ATCC 700345 Spea_0140 -112 4.9 TTTTTTGATCTAGTACACATAT
Shewanella halifaxensis HAW-EB4 Shal_4178 -112 4.8 TTTTTTGATCTTGCCCACATAT
Shewanella piezotolerans WP3 swp_0182 -113 4.9 TTTTTTGATCTAGTCCACATAT
Shewanella sediminis HAW-EB3 Ssed_4362 -142 4.1 AAACACGATCTTCCTCACACAT
Shewanella woodyi ATCC 51908 Swoo_4740 -100 3.8 AATCGTGACATAGCGCAAAGAC
Position: -35
Score: 4
Sequence: TATTGTTAGATCTATAAAAAAA
Locus tag: PTD2_17007
PTD2_17007 -35 4 TATTGTTAGATCTATAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: asnC
Ortholog function: regulatory protein AsnC
Shewanella sp ANA-3 Shewana3_0798 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-4 Shewmr4_3140 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella sp MR-7 Shewmr7_0826 -156 4.2 AAAGGTGACGAGTATAACAAAA
Shewanella denitrificans OS217 Sden_3049 -175 4 TAATGTGATTGGTATAAGAACA
Shewanella pealeana ATCC 700345 Spea_0737 -161 4.3 TATCGATATCTGCCTCACATAT
-7 3.8 ATTTATTATGGAAGTCCCATTT
Shewanella halifaxensis HAW-EB4 Shal_0790 -248 3.8 ATTTATAATGATAATCACAACT
Shewanella piezotolerans WP3 swp_4340 -322 3.9 TAATGCAATTGGTATTACAATA
Shewanella woodyi ATCC 51908 Swoo_0916 -67 3.7 TATTTTTACTTGCCTCAACTAA
Position: -195
Score: 3.8
Sequence: TATTATTATCTATATAGCCTTT
Locus tag: PTD2_22672
PTD2_22672 -195 3.8 TATTATTATCTATATAGCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadE2
Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewanella oneidensis MR-1 SO2536 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella putrefaciens CN-32 Sputcn32_1791 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp W3-18-1 Sputw3181_2234 -72 4.6 AATTGTGATCGCCATCAATAAA
Shewanella sp ANA-3 Shewana3_2323 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-4 Shewmr4_2146 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella sp MR-7 Shewmr7_2223 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella baltica OS155 Sbal_2306 -72 4.8 AATTGTGATCGCAATCAACAAA
Shewanella denitrificans OS217 Sden_1764 -66 3.8 ACTTGTGAATAGGATCATCATA
Shewanella frigidimarina NCIMB 400 Sfri_1869 -67 3.8 TCTTGTGAATGAGATCAATAAT
Shewanella amazonensis SB2B Sama_1870 -64 4.3 ACTTGTGATCAGGATCGCTTAT
Shewanella loihica PV-4 Shew_2108 -71 4.9 AATTGTGATTATGGTCATATAA
Shewanella pealeana ATCC 700345 Spea_2393 -70 4.5 AATTGTGAGATAGAACTCAAAA
Shewanella halifaxensis HAW-EB4 Shal_1890 -70 4.3 AATTGTGAGATAAACCTCAAAA
Shewanella piezotolerans WP3 swp_2312 -97 3.5 AATTGTGACGTAGACCCGCAAA
Shewanella sediminis HAW-EB3 Ssed_1999 -71 4.5 AATTGTGATTATGATCAATAAA
Shewanella woodyi ATCC 51908 Swoo_2604 -73 4.8 AATTGTGATATCGATCAATATA
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