Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Pseudoalteromonas tunicata D2

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Pseudoalteromonas tunicata D2
Orthologous TF(s) PTD2_19320
Regulated genes 14
Built upon 505 sites [see more]
Predicted regulatory interactions in Pseudoalteromonas tunicata D2
Locus tag Position Score Sequence
Position: -128
Score: 5.9
Sequence: AAATGATAACAATTACCATTT
Locus tag: PTD2_00706
PTD2_00706 -128 5.9 AAATGATAACAATTACCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: viuA
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO4516 -100 5.8 AAATGATATTGGTTATCAATT
Shewanella putrefaciens CN-32 Sputcn32_0330 -101 5.6 AAATGATAATCCTTCTCAGTT
Shewanella sp W3-18-1 Sputw3181_3878 -101 5.6 AAATGATAATCCTTCTCAGTT
Shewanella sp ANA-3 Shewana3_3923 -99 5.8 AAATGATATTGGTTATCATCT
Shewanella sp MR-4 Shewmr4_3727 -99 6 AAATGATATTGGTTATCATTT
Shewanella sp MR-7 Shewmr7_3798 -99 6 AAATGATATTGGTTATCATTT
Shewanella denitrificans OS217 Sden_0621 -92 5.2 AAATGAGAGTGATTTGCAATT
Shewanella piezotolerans WP3 swp_0161 -104 5.3 AAATGTGAATGATTCGCAATT
Position: -43
Score: 6
Sequence: AAATGATAATTGATATCATTT
Locus tag: PTD2_00731
PTD2_00731 -43 6 AAATGATAATTGATATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_2159
Ortholog function: TonB-dependent receptor
Shewanella denitrificans OS217 Sden_2159 -58 5.8 TATTGAGATTCATTATCATTT
Position: -23
Score: 5.9
Sequence: AAATAAAAACAATTATCATTA
Locus tag: PTD2_01521
PTD2_01521 -23 5.9 AAATAAAAACAATTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -157
Score: 4.9
Sequence: AAATAACAATAATTGTTATTC
Position: -154
Score: 4.3
Sequence: TAACAATAATTGTTATTCTTA
Locus tag: PTD2_02826
PTD2_02826 -157 4.9 AAATAACAATAATTGTTATTC
-154 4.3 TAACAATAATTGTTATTCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin subunit 2
Shewanella oneidensis MR-1 SO1111 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0948 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3228 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0946 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0944 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0982 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0932 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0990 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2873 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3095 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3179 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3608 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -66
Score: 6.3
Sequence: AATTGATAATAATTATCATTT
Locus tag: PTD2_04291
PTD2_04291 -66 6.3 AATTGATAATAATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_0603 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella sp W3-18-1 Sputw3181_3569 -91 5.1 AAATAACAATAACTATCATTA
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella denitrificans OS217 Sden_3064 -122 6.2 AAATAATAATGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella frigidimarina NCIMB 400 Sfri_3717 -90 5.7 AAATGATAATGATTTCTATTT
Shewanella frigidimarina NCIMB 400 Sfri_2549 -195 5 GATTGATAACGAATCTCAATA
-168 5.5 GAGTGATAATTATTATCAATT
-91 5.6 TAATGATAATCATTAGCAATA
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Shewanella loihica PV-4 Shew_3097 -136 5.9 AAATGATAACCATTCCCATTT
Position: -64
Score: 5.8
Sequence: TATTGAAAATGATTGTCATTT
Locus tag: PTD2_08349
PTD2_08349 -64 5.8 TATTGAAAATGATTGTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Shewanella loihica PV-4 Shew_0552 -57 5.4 CAGTGAGAATCGTTTTCATTT
Shewanella sediminis HAW-EB3 Ssed_0782 -54 5.8 CATTGAGAATCATTTTCATTT
Shewanella woodyi ATCC 51908 Swoo_4187 -56 5.6 CATTGAGAATCGTTTTCATTT
Position: -33
Score: 5.6
Sequence: ATTTGATAATAATTCTTATTT
Locus tag: PTD2_08484
PTD2_08484 -33 5.6 ATTTGATAATAATTCTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
Position: -85
Score: 6
Sequence: AAATGATATTTATTATCATTA
Position: -29
Score: 5.9
Sequence: AAATAAGATTTATTATCATTT
Locus tag: PTD2_09069
PTD2_09069 -85 6 AAATGATATTTATTATCATTA
-29 5.9 AAATAAGATTTATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_0811
Ortholog function: Imelysin peptidase family lipoprotein
Shewanella denitrificans OS217 Sden_0722 -74 5.8 TAATGCAAATTGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0811 -78 5.6 TAATGCGAATCGTTATCAATT
Shewanella loihica PV-4 Shew_0676 -77 6 TAATGCAAATTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_0671 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3527 -100 5.7 TAATGTAAATCATTCTCATTT
Shewanella piezotolerans WP3 swp_4048 -86 5.8 TAATGCAAATCGTTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_3792 -76 5.1 TAATGCAAACGATTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_0791 -79 5.8 TAATGAAAACGATTCGCATTT
Position: -92
Score: 5
Sequence: AAATAATAATTATTCGTATAA
Position: -47
Score: 5.6
Sequence: AACTGATAATTATTATCATTC
Locus tag: PTD2_20667
PTD2_20667 -92 5 AAATAATAATTATTCGTATAA
-47 5.6 AACTGATAATTATTATCATTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1482
Ortholog function: TonB-dependent receptor
Shewanella oneidensis MR-1 SO1482 -49 5 GGATGGAAATCATTATCATTC
Shewanella putrefaciens CN-32 Sputcn32_1237 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp W3-18-1 Sputw3181_2867 -49 4.7 AAATACAAATCATTACTATTC
Shewanella sp ANA-3 Shewana3_2944 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-4 Shewmr4_2768 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella sp MR-7 Shewmr7_2846 -48 5.8 AGATGAAAATCATTATCATTC
Shewanella baltica OS155 Sbal_1315 -49 5 AAATGCAAATCATTACTATTC
Shewanella denitrificans OS217 Sden_1445 -48 5.2 CTATGATAATCATTATCATTC
Shewanella frigidimarina NCIMB 400 Sfri_2440 -52 5.6 TTATGATAATCATTATCATTC
Shewanella loihica PV-4 Shew_2690 -51 6 TATTGATAATCGTTATCATTT
Shewanella pealeana ATCC 700345 Spea_2930 -51 6 TAATGATAATCGTTATCATCT
Shewanella halifaxensis HAW-EB4 Shal_3021 -51 5.6 TAATAAGAATCGTTATCATCT
Shewanella piezotolerans WP3 swp_3568 -51 5.8 TAATGATAATGGTTATCATCA
Shewanella sediminis HAW-EB3 Ssed_3242 -49 5.5 AAATGCAAATCGTTATCATTC
Shewanella woodyi ATCC 51908 Swoo_3375 -51 6 TAATGATAATCGTTATCATCT
Position: -76
Score: 5.9
Sequence: TAATGAGAAGTATTATCATTT
Locus tag: PTD2_10203
PTD2_10203 -76 5.9 TAATGAGAAGTATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hmuB
Ortholog function: ABC hemin transporter, periplasmic ligand-binding subunit, HmuB
Shewanella oneidensis MR-1 SO3673 -97 5.7 AAATAGAAATCATTATCATTT
Shewanella putrefaciens CN-32 Sputcn32_0962 -31 5.2 AAATGATAATTATCATGATTA
Shewanella sp ANA-3 Shewana3_3239 -98 6 AAATGGAAATCATTATCATTT
Shewanella denitrificans OS217 Sden_0786 -66 6.5 AAATGAAAATCATTATCATTT
Shewanella pealeana ATCC 700345 Spea_3331 -206 6.5 AAATGAAAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_3403 -207 6.5 AAATGAAAATCATTATCATTT
Shewanella piezotolerans WP3 swp_3982 -183 6.5 AAATGAAAATCATTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4008 -80 6.5 AAATGAAAATCATTATCATTT
Position: -162
Score: 5.8
Sequence: AAATAATAACCATTATCAATT
Locus tag: PTD2_16666
PTD2_16666 -162 5.8 AAATAATAACCATTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1188
Ortholog function: Inner membrane protein with PepSY TM helix
Shewanella oneidensis MR-1 SO1188 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2850 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1054 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1014 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1010 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1075 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3255 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2152 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Position: -2
Score: 4.3
Sequence: TAATGAAAATAACGATCAAAA
Locus tag: PTD2_16671
PTD2_16671 -2 4.3 TAATGAAAATAACGATCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1189
Ortholog function: Putative exported protein
Shewanella oneidensis MR-1 SO1189 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2849 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1055 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1015 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1011 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1076 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3254 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2151 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2809 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3071 -102 4.3 TGATCATAATTGTTTTAAATC
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