Propagation of Fur regulog to Shewanella pealeana ATCC 700345
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella pealeana ATCC 700345 |
| Orthologous TF(s) | Spea_1796 |
| Regulated genes | 26 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -111
Score: 6 Sequence: AAATGAAAACCATTATTATTT
Locus tag: Spea_0129
|
||||
| Spea_0129 | -111 | 6 | AAATGAAAACCATTATTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftn | ||||
| Ortholog function: Ferritin, Ftn | ||||
| Shewanella oneidensis MR-1 | SO0139 | -133 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella putrefaciens CN-32 | Sputcn32_0132 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp W3-18-1 | Sputw3181_3940 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp ANA-3 | Shewana3_0132 | -132 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp MR-4 | Shewmr4_0133 | -132 | 5.4 | AAATGCAAATCATTTTTATCA |
| Shewanella sp MR-7 | Shewmr7_0127 | -132 | 5.4 | AAATGCAAATCATTTTTATCA |
| Shewanella baltica OS155 | Sbal_4222 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella amazonensis SB2B | Sama_0141 | -113 | 5.1 | TAATGATAAGTGTTACTATTT |
| Shewanella loihica PV-4 | Shew_0042 | -381 | 5.4 | TAACGATAATTATTTGCATTT |
| Shewanella pealeana ATCC 700345 | Spea_0129 | -111 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4189 | -111 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella piezotolerans WP3 | swp_0167 | -110 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4374 | -107 | 5.7 | TAATGATAATTATTAGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4766 | -176 | 5.7 | TAATGAGAATTATTTGTATTT |
|
Position: -100
Score: 5.7 Sequence: TAATGTAAATCATTCTCATTT
Locus tag: Spea_0670
|
||||
| Spea_0670 | -100 | 5.7 | TAATGTAAATCATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_0810 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella denitrificans OS217 | Sden_0721 | -74 | 5.8 | TAATGCAAATTGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0810 | -78 | 5.6 | TAATGCGAATCGTTATCAATT |
| Shewanella loihica PV-4 | Shew_0675 | -77 | 6 | TAATGCAAATTATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_0670 | -100 | 5.7 | TAATGTAAATCATTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3528 | -100 | 5.7 | TAATGTAAATCATTCTCATTT |
| Shewanella piezotolerans WP3 | swp_4049 | -86 | 5.8 | TAATGCAAATCGTTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3793 | -76 | 5.1 | TAATGCAAACGATTCGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0790 | -79 | 5.8 | TAATGAAAACGATTCGCATTT |
|
Position: -82
Score: 5.6 Sequence: TAATGATAACGATTTGCATTA
Locus tag: Spea_0712
|
||||
| Spea_0712 | -82 | 5.6 | TAATGATAACGATTTGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_4035 | ||||
| Ortholog function: Conserved hypothetical signal peptide protein, possibly porin | ||||
| Shewanella baltica OS155 | Sbal_2014 | -93 | 5.4 | AAATGCGAATTGTTTGCATTA |
| Shewanella denitrificans OS217 | Sden_0638 | -91 | 5.1 | AAATACGAATAGTTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4035 | -106 | 5.6 | TAATGATAATGGTTTGCATTA |
| Shewanella amazonensis SB2B | Sama_0589 | -84 | 5.1 | CAATGCGAATCGTTTGCATTT |
| Shewanella loihica PV-4 | Shew_3120 | -84 | 5.7 | TAATGATAATAGTTTGCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0712 | -82 | 5.6 | TAATGATAACGATTTGCATTA |
| Shewanella piezotolerans WP3 | swp_4367 | -81 | 6 | AAATGAGAATAATTTGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3889 | -83 | 5.6 | AAATGATAACCGTTTGCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3788 | -83 | 5.4 | GAATGATAACAATTTGCATTA |
|
Position: -66
Score: 5.5 Sequence: AAATGATAATCAATCCCATTA
Locus tag: Spea_0713
|
||||
| Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0590 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0630 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella sp MR-7 | Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella amazonensis SB2B | Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0766 | -67 | 5.6 | AAATGAGAATGAATAGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3888 | -84 | 5.5 | AAATGATAACCACTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3787 | -2 | 5.5 | AAATGATAATCAATCCCATTA |
|
Position: -60
Score: 5.8 Sequence: AATTGAGAATTATTATCAGTT
Locus tag: Spea_0844
|
||||
| Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbpA | ||||
| Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA | ||||
| Shewanella oneidensis MR-1 | SO0744 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3227 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_0714 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp ANA-3 | Shewana3_3517 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-4 | Shewmr4_3347 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-7 | Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella baltica OS155 | Sbal_0812 | -76 | 5.4 | AACTGATAAGCATTATCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT |
| Shewanella amazonensis SB2B | Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA |
| Shewanella loihica PV-4 | Shew_0861 | -41 | 6.1 | AATTGATAATTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0897 | -64 | 5.4 | AATTGAGAATTATTATCAGTC |
| Shewanella piezotolerans WP3 | swp_4107 | -60 | 5.2 | AATTGAGAACTATTATCAGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0945 | -58 | 5.7 | GATTGATAATAATTATCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_0996 | -57 | 5.4 | AATTGATAACTATTATCATCG |
|
Position: -108
Score: 5.3 Sequence: AAACACTAATCATTATCATTT
Locus tag: Spea_0977
|
||||
| Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |
|
Position: -33
Score: 6.1 Sequence: TAATGATAATGATTATCAATT
Locus tag: Spea_1134
|
||||
| Spea_1134 | -33 | 6.1 | TAATGATAATGATTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3344 | ||||
| Ortholog function: Hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO3344 | -44 | 6 | AAATGATAATGATTATCAGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2679 | -40 | 6 | AGATGATAATGATTATCAATT |
| Shewanella sp W3-18-1 | Sputw3181_1332 | -40 | 6 | AGATGATAATGATTATCAATT |
| Shewanella sp ANA-3 | Shewana3_1202 | -44 | 6.1 | AAATGATAATGATTATCACTT |
| Shewanella sp MR-4 | Shewmr4_1201 | -44 | 6.1 | AAATGATAATGATTATCACTT |
| Shewanella sp MR-7 | Shewmr7_1272 | -44 | 6.1 | AAATGATAATGATTATCACTT |
| Shewanella baltica OS155 | Sbal_3017 | -41 | 6 | AGATGATAATGATTATCAATT |
| Shewanella loihica PV-4 | Shew_1146 | -43 | 6.3 | AAATGATAATGATTATCAATT |
| Shewanella pealeana ATCC 700345 | Spea_1134 | -33 | 6.1 | TAATGATAATGATTATCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1179 | -44 | 6.1 | AATTGATAATGATTATCAATT |
| Shewanella piezotolerans WP3 | swp_3598 | -43 | 6.1 | TAATGATAATGATTATCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1239 | -41 | 5.7 | TAATGATAATGATTATCAATC |
| Shewanella woodyi ATCC 51908 | Swoo_1339 | -42 | 6 | AAATGATAATGATTATCAGTT |
|
Position: -82
Score: 5.3 Sequence: GAATGAAAACAGTTATCAGTT
Locus tag: Spea_1223
|
||||
| Spea_1223 | -82 | 5.3 | GAATGAAAACAGTTATCAGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3406 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_1223 | -82 | 5.3 | GAATGAAAACAGTTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1257 | -96 | 5.1 | GAATGGAAACGGTTCTCAATT |
| Shewanella piezotolerans WP3 | swp_3413 | -91 | 5.2 | GAATAAAAATGGTTATCAATA |
|
Position: -61
Score: 5.4 Sequence: TGTTGAGAACAGTTCTCATTA
Locus tag: Spea_1624
|
||||
| Spea_1624 | -61 | 5.4 | TGTTGAGAACAGTTCTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3062 | ||||
| Ortholog function: Hypothetical inner membrane protein | ||||
| Shewanella pealeana ATCC 700345 | Spea_1624 | -61 | 5.4 | TGTTGAGAACAGTTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_2977 | -70 | 6.3 | AATTGAGAATAATTCTCATTT |
|
Position: -117
Score: 6.1 Sequence: TATTGATAATCATTATCATTT
Locus tag: Spea_2212
|
||||
| Spea_2212 | -117 | 6.1 | TATTGATAATCATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_2008 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1997 | -63 | 5.9 | TGTTGATAATAATTATCATTT |
| Shewanella sp MR-4 | Shewmr4_2003 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella sp MR-7 | Shewmr7_1972 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella baltica OS155 | Sbal_4484 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella baltica OS155 | Sbal_2198 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella denitrificans OS217 | Sden_1854 | -36 | 6 | AAATAAAAACCATTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2008 | -116 | 6 | AATTGATAACTATTCTCATTA |
| Shewanella amazonensis SB2B | Sama_1788 | -52 | 6 | ATATGATAACTATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2212 | -117 | 6.1 | TATTGATAATCATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2195 | -62 | 5.9 | TGTTGATAATCATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2208 | -64 | 5.8 | CATTGATAATCATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2428 | -62 | 5.9 | AGTTGATAACCATTCTCATTT |
|
Position: -34
Score: 5.3 Sequence: TAATGCGAATTATTCGTATTT
Locus tag: Spea_2236
|
||||
| Spea_2236 | -34 | 5.3 | TAATGCGAATTATTCGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2426 | ||||
| Ortholog function: Two component transcriptional regulator, Winged helix family | ||||
| Shewanella oneidensis MR-1 | SO2426 | -2 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1941 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_2064 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1959 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1904 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_2074 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella baltica OS155 | Sbal_2050 | -32 | 5.1 | AAATGATATAGATTCTCGTTT |
| Shewanella denitrificans OS217 | Sden_1906 | 10 | 5.6 | TAATGAAAATGGTTATCGTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2150 | -32 | 5.6 | TAATGGTAATCGTTATCATTA |
| Shewanella amazonensis SB2B | Sama_1718 | -32 | 4.8 | GAATAACAACCGTTCGCATTT |
| Shewanella loihica PV-4 | Shew_1936 | -31 | 6 | TAATGATAACTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_2236 | -34 | 5.3 | TAATGCGAATTATTCGTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2220 | -34 | 5.6 | AAATGAAAATGATTCGCATTG |
| Shewanella piezotolerans WP3 | swp_2595 | -9 | 5.5 | CAATGATAATTGTTCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2316 | -34 | 5.5 | AAATGATAACAGTTCGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2294 | -36 | 5.4 | TGTTGATAATTGTTCGCATTT |
|
Position: -104
Score: 5.5 Sequence: GAACGATAATGATTTTCATTT
Locus tag: Spea_2627
|
||||
| Spea_2627 | -104 | 5.5 | GAACGATAATGATTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2841 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2841 | -60 | 5.4 | GACTGATAATAGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1534 | -59 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_2565 | -59 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_2609 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_2447 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_2517 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella baltica OS155 | Sbal_1657 | -63 | 5.4 | GACTGATAATAGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_1270 | -60 | 5.4 | GACTGAGAATGGTTTTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2627 | -104 | 5.5 | GAACGATAATGATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2698 | -103 | 5.8 | TAACGATAATGATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_3175 | -56 | 6.1 | AATTGATAACGATTTTCATTT |
|
Position: -191
Score: 5.1 Sequence: AAATAGTAACCATTCTTAATT
Position: -126
Score: 5.7 Sequence: AATTGAAAATTATTATCGTTT
Locus tag: Spea_2691
|
||||
| Spea_2691 | -191 | 5.1 | AAATAGTAACCATTCTTAATT | |
| -126 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp ANA-3 | Shewana3_2671 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-4 | Shewmr4_2505 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-7 | Shewmr7_2573 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella baltica OS155 | Sbal_1594 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella denitrificans OS217 | Sden_2415 | -116 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2617 | -111 | 5.1 | AACTGAAAACTATTCTCGTTA |
| Shewanella amazonensis SB2B | Sama_1214 | -119 | 5.6 | AATTGAAAATTATTATCGTTA |
| Shewanella loihica PV-4 | Shew_2518 | -192 | 5.8 | CAATGAAAATGGTTCTCATTT |
| -123 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -191 | 5.1 | AAATAGTAACCATTCTTAATT |
| -126 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -126 | 5.7 | AATTGAAAATTATTATCGTTT |
| Shewanella piezotolerans WP3 | swp_3271 | -225 | 5.3 | AAATAATAACCATTACTATTT |
| -125 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -219 | 4.9 | GAGCGATAATCATTCTCATCT |
| -126 | 5.6 | AATTGAAAACTATTCTCGTTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -218 | 4.8 | TAGTGATAATCGTTCTCACAA |
| -125 | 5.6 | AATTGAAAACTATTATCGTTT | ||
|
Position: -317
Score: 5.7 Sequence: AAACGATAATAATTTTCAATT
Locus tag: Spea_2692
|
||||
| Spea_2692 | -317 | 5.7 | AAACGATAATAATTTTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrD | ||||
| Ortholog function: Periplasmic decaheme cytochrome c, MtrD | ||||
| Shewanella oneidensis MR-1 | SO1782 | -370 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp ANA-3 | Shewana3_2672 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp MR-4 | Shewmr4_2506 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp MR-7 | Shewmr7_2574 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella baltica OS155 | Sbal_1593 | -335 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella amazonensis SB2B | Sama_1213 | -297 | 5.6 | TAACGATAATAATTTTCAATT |
| -150 | 4.7 | AAATCAGACTAATTATTAATA | ||
| Shewanella loihica PV-4 | Shew_2519 | -291 | 5.7 | AAACGATAATAATTTTCAATT |
| -222 | 5.8 | AAATGAGAACCATTTTCATTG | ||
| Shewanella pealeana ATCC 700345 | Spea_2692 | -317 | 5.7 | AAACGATAATAATTTTCAATT |
| -252 | 5.1 | AATTAAGAATGGTTACTATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2778 | -336 | 5.7 | AAACGATAATAATTTTCAATT |
| Shewanella piezotolerans WP3 | swp_3272 | -339 | 5.7 | AAACGATAATAATTTTCAATT |
| -239 | 5.3 | AAATAGTAATGGTTATTATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1530 | -322 | 5.6 | AAACGAGAATAGTTTTCAATT |
| -229 | 4.9 | AGATGAGAATGATTATCGCTC | ||
| -110 | 4.8 | AGATAAAAATGTTACTCATTT | ||
|
Position: -67
Score: 5.3 Sequence: AAATGAGAGTTGTTCTCATAT
Locus tag: Spea_2697
|
||||
| Spea_2697 | -67 | 5.3 | AAATGAGAGTTGTTCTCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA2 | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella pealeana ATCC 700345 | Spea_2697 | -67 | 5.3 | AAATGAGAGTTGTTCTCATAT |
| Shewanella woodyi ATCC 51908 | Swoo_3124 | -79 | 4.6 | GAATAAGAATCACTCTTATCT |
|
Position: -43
Score: 5.8 Sequence: AAAAGAGAATAATTCTCATTT
Locus tag: Spea_2929
|
||||
| Spea_2929 | -43 | 5.8 | AAAAGAGAATAATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0719 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO0719 | -40 | 4.9 | AGGTAGGAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2929 | -43 | 5.8 | AAAAGAGAATAATTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3020 | -42 | 5.8 | AAAGGAGAATAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3638 | -42 | 5.5 | TAAGGATAATAATTCTCATTA |
|
Position: -51
Score: 6 Sequence: TAATGATAATCGTTATCATCT
Locus tag: Spea_2930
|
||||
| Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO1482 | -49 | 5 | GGATGGAAATCATTATCATTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1237 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp W3-18-1 | Sputw3181_2867 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp ANA-3 | Shewana3_2944 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_2768 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella baltica OS155 | Sbal_1315 | -49 | 5 | AAATGCAAATCATTACTATTC |
| Shewanella denitrificans OS217 | Sden_1445 | -48 | 5.2 | CTATGATAATCATTATCATTC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC |
| Shewanella loihica PV-4 | Shew_2690 | -51 | 6 | TATTGATAATCGTTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -51 | 5.6 | TAATAAGAATCGTTATCATCT |
| Shewanella piezotolerans WP3 | swp_3568 | -51 | 5.8 | TAATGATAATGGTTATCATCA |
| Shewanella sediminis HAW-EB3 | Ssed_3242 | -49 | 5.5 | AAATGCAAATCGTTATCATTC |
| Shewanella woodyi ATCC 51908 | Swoo_3375 | -51 | 6 | TAATGATAATCGTTATCATCT |
|
Position: -80
Score: 5.5 Sequence: AAATGAAATCAATTATAATTT
Locus tag: Spea_3021
|
||||
| Spea_3021 | -80 | 5.5 | AAATGAAATCAATTATAATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: adhC | ||||
| Ortholog function: S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) | ||||
| Shewanella pealeana ATCC 700345 | Spea_3021 | -80 | 5.5 | AAATGAAATCAATTATAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3111 | -78 | 4.8 | AAATGGAATTAGTTATAATCT |
| Shewanella piezotolerans WP3 | swp_2093 | -111 | 4.6 | ATATTAGAGGGATTATCATTT |
|
Position: -116
Score: 5.4 Sequence: TAATGAGAATGGTTATCTTTA
Locus tag: Spea_3095
|
||||
| Spea_3095 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin subunit 2 | ||||
| Shewanella oneidensis MR-1 | SO1111 | -125 | 5.2 | TAATGAGAATGCTTTTAATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-4 | Shewmr4_0944 | -124 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-7 | Shewmr7_0982 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella baltica OS155 | Sbal_0932 | -126 | 5.3 | AAATGAGAATGGTTGTTATCA |
| Shewanella denitrificans OS217 | Sden_0990 | -120 | 5.6 | TAATGATAATGGTTATCACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -121 | 6 | TAATGATAATAGTTATCAATT |
| Shewanella amazonensis SB2B | Sama_2530 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT |
| Shewanella loihica PV-4 | Shew_2873 | -115 | 4.8 | GAATGAGAACGATTTTCTTTG |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -121 | 4.3 | TAGTGATAATGAAAATCACTA |
| -88 | 4.3 | TGTTGATATTTAACCTTATTT | ||
| Shewanella piezotolerans WP3 | swp_1175 | -118 | 5.5 | TAATGATAATAATTATCTTTA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -137 | 4.6 | TAATGGGAATGATTATCTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -167 | 4.5 | AAATGATAATGCTTAATGTTA |
|
Position: -143
Score: 6.5 Sequence: AAATGATAATGATTTTCATTT
Locus tag: Spea_3327
|
||||
| Spea_3327 | -143 | 6.5 | AAATGATAATGATTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmuA | ||||
| Ortholog function: TonB-dependent haem/haemoglobin receptor, HmuA | ||||
| Shewanella oneidensis MR-1 | SO3669 | -169 | 5.7 | AAATGATAATGATTTCTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0966 | -178 | 6.1 | AAATGATAATGATTACCATTT |
| Shewanella sp W3-18-1 | Sputw3181_3201 | -178 | 6.1 | AAATGATAATGATTACCATTT |
| Shewanella sp ANA-3 | Shewana3_3235 | -171 | 6 | AAATGATAATGATTTCCATTT |
| Shewanella baltica OS155 | Sbal_0952 | -284 | 6.1 | AAATGATAATGATTTGCATTT |
| Shewanella denitrificans OS217 | Sden_0790 | -133 | 6.5 | AAATGATAATGATTTTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_3327 | -143 | 6.5 | AAATGATAATGATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3399 | -144 | 6.5 | AAATGATAATGATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_3978 | -143 | 6.5 | AAATGATAATGATTTTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4004 | -113 | 6.5 | AAATGATAATGATTTTCATTT |
|
Position: -206
Score: 6.5 Sequence: AAATGAAAATCATTATCATTT
Locus tag: Spea_3328
|
||||
| Spea_3328 | -206 | 6.5 | AAATGAAAATCATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tonB | ||||
| Ortholog function: TonB mediated energy transduction system, energy transducer component, TonB | ||||
| Shewanella oneidensis MR-1 | SO3670 | -97 | 5.7 | AAATAGAAATCATTATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0965 | -75 | 6.1 | AAATGGTAATCATTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_3202 | -75 | 6.1 | AAATGGTAATCATTATCATTT |
| Shewanella sp ANA-3 | Shewana3_3236 | -98 | 6 | AAATGGAAATCATTATCATTT |
| Shewanella baltica OS155 | Sbal_0951 | -63 | 6.1 | AAATGCAAATCATTATCATTT |
| Shewanella denitrificans OS217 | Sden_0789 | -66 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_3328 | -206 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3400 | -207 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_3979 | -183 | 6.5 | AAATGAAAATCATTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4005 | -80 | 6.5 | AAATGAAAATCATTATCATTT |
|
Position: -53
Score: 5.8 Sequence: ATTTGATAATAATTATCATTA
Locus tag: Spea_3339
|
||||
| Spea_3339 | -53 | 5.8 | ATTTGATAATAATTATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Spea_3339 | ||||
| Ortholog function: Coproporphyrinogen III oxidase | ||||
| Shewanella pealeana ATCC 700345 | Spea_3339 | -53 | 5.8 | ATTTGATAATAATTATCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3411 | -54 | 5.9 | ATTTGATAATGATTATCATTT |
| Shewanella piezotolerans WP3 | swp_3985 | -48 | 5.9 | AGTTGATAATGATTATCATTA |
|
Position: -58
Score: 5.8 Sequence: CATTGAGAATCATTTTCATTT
Locus tag: Spea_3555
|
||||
| Spea_3555 | -58 | 5.8 | CATTGAGAATCATTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Shewanella oneidensis MR-1 | SO0583 | -55 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3295 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0646 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_0581 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_0582 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_3448 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella baltica OS155 | Sbal_0542 | -53 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella denitrificans OS217 | Sden_3217 | -99 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3324 | -76 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_3040 | -59 | 5.5 | TGATGAGAACGGTTTTTATTT |
| Shewanella pealeana ATCC 700345 | Spea_3555 | -58 | 5.8 | CATTGAGAATCATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3649 | -58 | 5.5 | CACTGAGAATCATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_0771 | -86 | 5.3 | GATTGATAACTATTCTCATCA |
| -57 | 5.6 | CATTGAGAATCGTTTTCATTT | ||
|
Position: 7
Score: 5 Sequence: AAATACGAGCTATTATCATTT
Locus tag: Spea_4066
|
||||
| Spea_4066 | 7 | 5 | AAATACGAGCTATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4700 | ||||
| Ortholog function: Hypothetical outer membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4700 | -86 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp ANA-3 | Shewana3_4052 | -86 | 4.8 | AAATCGAATCCATTCTCATTA |
| Shewanella sp MR-4 | Shewmr4_3843 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp MR-7 | Shewmr7_3936 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella baltica OS155 | Sbal_0123 | -86 | 4.5 | AAATCGAATCAATTCGCATTA |
| Shewanella denitrificans OS217 | Sden_3594 | -123 | 4.7 | AAATAAGACTGGTTTGTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3875 | -80 | 5.3 | AAACGAGACTGATTATCATTT |
| Shewanella loihica PV-4 | Shew_3658 | -83 | 5.3 | AAATGCAACCAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4066 | 7 | 5 | AAATACGAGCTATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0192 | -87 | 4.4 | AAATACGTCCCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_4927 | -86 | 5 | AAATACAACCGATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0144 | -97 | 5.5 | AAATGGGAAGTGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0123 | -85 | 5.2 | AAATACAAAGCGTTATCATTT |
|
Position: -47
Score: 5.9 Sequence: AAATGAGAAGCGTTATCATTT
Locus tag: Spea_4226
|
||||
| Spea_4226 | -47 | 5.9 | AAATGAGAAGCGTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4740 | ||||
| Ortholog function: Conserved hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4740 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3921 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp W3-18-1 | Sputw3181_4047 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp ANA-3 | Shewana3_4124 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-4 | Shewmr4_3919 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-7 | Shewmr7_4011 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella baltica OS155 | Sbal_4341 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella denitrificans OS217 | Sden_3706 | -50 | 6 | TATTGATAACGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4031 | -46 | 6 | TAATGAGAACTGTTATCATTT |
| Shewanella amazonensis SB2B | Sama_3636 | -50 | 5.9 | AAGTGATAACTATTATCATTT |
| Shewanella loihica PV-4 | Shew_3815 | -46 | 6.5 | AAATGATAATAATTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4226 | -47 | 5.9 | AAATGAGAAGCGTTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4274 | -47 | 6.3 | AAATGATAACCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_5137 | -46 | 6.1 | AAATGATAATCGTTATCATCT |
| Shewanella sediminis HAW-EB3 | Ssed_4479 | -47 | 6.1 | AGATGAGAATAGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4887 | -50 | 6.3 | AAATGAGAACCATTATCATTT |
|
Position: -69
Score: 6 Sequence: AAATAAAAATAGTTCTCATTT
Locus tag: Spea_4236
|
||||
| Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -116 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_4127 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-4 | Shewmr4_3922 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella baltica OS155 | Sbal_4363 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT |
| Shewanella amazonensis SB2B | Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT |
| Shewanella loihica PV-4 | Shew_3841 | -69 | 6 | AAATAAAAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -68 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella piezotolerans WP3 | swp_5150 | -68 | 5.6 | GAATAAAAACAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4483 | -66 | 6 | AAATAAAAACGATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -67 | 6.2 | AAATAAAAATAATTCTCATTT |