Propagation of Fur regulog to Shewanella amazonensis SB2B
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella amazonensis SB2B |
| Orthologous TF(s) | Sama_1434 |
| Regulated genes | 23 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -113
Score: 5.1 Sequence: TAATGATAAGTGTTACTATTT
Locus tag: Sama_0141
|
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| Sama_0141 | -113 | 5.1 | TAATGATAAGTGTTACTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftn | ||||
| Ortholog function: Ferritin, Ftn | ||||
| Shewanella oneidensis MR-1 | SO0139 | -133 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella putrefaciens CN-32 | Sputcn32_0132 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp W3-18-1 | Sputw3181_3940 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp ANA-3 | Shewana3_0132 | -132 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp MR-4 | Shewmr4_0133 | -132 | 5.4 | AAATGCAAATCATTTTTATCA |
| Shewanella sp MR-7 | Shewmr7_0127 | -132 | 5.4 | AAATGCAAATCATTTTTATCA |
| Shewanella baltica OS155 | Sbal_4222 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella amazonensis SB2B | Sama_0141 | -113 | 5.1 | TAATGATAAGTGTTACTATTT |
| Shewanella loihica PV-4 | Shew_0042 | -381 | 5.4 | TAACGATAATTATTTGCATTT |
| Shewanella pealeana ATCC 700345 | Spea_0129 | -111 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4189 | -111 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella piezotolerans WP3 | swp_0167 | -110 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4374 | -107 | 5.7 | TAATGATAATTATTAGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4766 | -176 | 5.7 | TAATGAGAATTATTTGTATTT |
|
Position: -84
Score: 5.1 Sequence: CAATGCGAATCGTTTGCATTT
Locus tag: Sama_0589
|
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| Sama_0589 | -84 | 5.1 | CAATGCGAATCGTTTGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_4035 | ||||
| Ortholog function: Conserved hypothetical signal peptide protein, possibly porin | ||||
| Shewanella baltica OS155 | Sbal_2014 | -93 | 5.4 | AAATGCGAATTGTTTGCATTA |
| Shewanella denitrificans OS217 | Sden_0638 | -91 | 5.1 | AAATACGAATAGTTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_4035 | -106 | 5.6 | TAATGATAATGGTTTGCATTA |
| Shewanella amazonensis SB2B | Sama_0589 | -84 | 5.1 | CAATGCGAATCGTTTGCATTT |
| Shewanella loihica PV-4 | Shew_3120 | -84 | 5.7 | TAATGATAATAGTTTGCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0712 | -82 | 5.6 | TAATGATAACGATTTGCATTA |
| Shewanella piezotolerans WP3 | swp_4367 | -81 | 6 | AAATGAGAATAATTTGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3889 | -83 | 5.6 | AAATGATAACCGTTTGCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3788 | -83 | 5.4 | GAATGATAACAATTTGCATTA |
|
Position: -2
Score: 5.9 Sequence: AAATGATAACTATTGTCATTA
Locus tag: Sama_0590
|
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| Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0590 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0630 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella sp MR-7 | Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella amazonensis SB2B | Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0766 | -67 | 5.6 | AAATGAGAATGAATAGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3888 | -84 | 5.5 | AAATGATAACCACTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3787 | -2 | 5.5 | AAATGATAATCAATCCCATTA |
|
Position: -57
Score: 5.8 Sequence: TAGTGATAATAATTATCATTA
Locus tag: Sama_0666
|
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| Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbpA | ||||
| Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA | ||||
| Shewanella oneidensis MR-1 | SO0744 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3227 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_0714 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp ANA-3 | Shewana3_3517 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-4 | Shewmr4_3347 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-7 | Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella baltica OS155 | Sbal_0812 | -76 | 5.4 | AACTGATAAGCATTATCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT |
| Shewanella amazonensis SB2B | Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA |
| Shewanella loihica PV-4 | Shew_0861 | -41 | 6.1 | AATTGATAATTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0897 | -64 | 5.4 | AATTGAGAATTATTATCAGTC |
| Shewanella piezotolerans WP3 | swp_4107 | -60 | 5.2 | AATTGAGAACTATTATCAGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0945 | -58 | 5.7 | GATTGATAATAATTATCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_0996 | -57 | 5.4 | AATTGATAACTATTATCATCG |
|
Position: -38
Score: 5.4 Sequence: AGATGAAAACCATTCTCGTTA
Locus tag: Sama_0949
|
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| Sama_0949 | -38 | 5.4 | AGATGAAAACCATTCTCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_2703 | ||||
| Ortholog function: Cytochrome B561 | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2703 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1308 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp ANA-3 | Shewana3_1178 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-4 | Shewmr4_1177 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-7 | Shewmr7_1248 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella baltica OS155 | Sbal_3042 | -61 | 5.3 | TTATGATAATGAATATTATTT |
| Shewanella amazonensis SB2B | Sama_0949 | -38 | 5.4 | AGATGAAAACCATTCTCGTTA |
|
Position: -297
Score: 5.6 Sequence: TAACGATAATAATTTTCAATT
Locus tag: Sama_1213
|
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| Sama_1213 | -297 | 5.6 | TAACGATAATAATTTTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrD | ||||
| Ortholog function: Periplasmic decaheme cytochrome c, MtrD | ||||
| Shewanella oneidensis MR-1 | SO1782 | -370 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp ANA-3 | Shewana3_2672 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp MR-4 | Shewmr4_2506 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp MR-7 | Shewmr7_2574 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella baltica OS155 | Sbal_1593 | -335 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella amazonensis SB2B | Sama_1213 | -297 | 5.6 | TAACGATAATAATTTTCAATT |
| -150 | 4.7 | AAATCAGACTAATTATTAATA | ||
| Shewanella loihica PV-4 | Shew_2519 | -291 | 5.7 | AAACGATAATAATTTTCAATT |
| -222 | 5.8 | AAATGAGAACCATTTTCATTG | ||
| Shewanella pealeana ATCC 700345 | Spea_2692 | -317 | 5.7 | AAACGATAATAATTTTCAATT |
| -252 | 5.1 | AATTAAGAATGGTTACTATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2778 | -336 | 5.7 | AAACGATAATAATTTTCAATT |
| Shewanella piezotolerans WP3 | swp_3272 | -339 | 5.7 | AAACGATAATAATTTTCAATT |
| -239 | 5.3 | AAATAGTAATGGTTATTATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1530 | -322 | 5.6 | AAACGAGAATAGTTTTCAATT |
| -229 | 4.9 | AGATGAGAATGATTATCGCTC | ||
| -110 | 4.8 | AGATAAAAATGTTACTCATTT | ||
|
Position: -119
Score: 5.6 Sequence: AATTGAAAATTATTATCGTTA
Locus tag: Sama_1214
|
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| Sama_1214 | -119 | 5.6 | AATTGAAAATTATTATCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp ANA-3 | Shewana3_2671 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-4 | Shewmr4_2505 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-7 | Shewmr7_2573 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella baltica OS155 | Sbal_1594 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella denitrificans OS217 | Sden_2415 | -116 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2617 | -111 | 5.1 | AACTGAAAACTATTCTCGTTA |
| Shewanella amazonensis SB2B | Sama_1214 | -119 | 5.6 | AATTGAAAATTATTATCGTTA |
| Shewanella loihica PV-4 | Shew_2518 | -192 | 5.8 | CAATGAAAATGGTTCTCATTT |
| -123 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -191 | 5.1 | AAATAGTAACCATTCTTAATT |
| -126 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -126 | 5.7 | AATTGAAAATTATTATCGTTT |
| Shewanella piezotolerans WP3 | swp_3271 | -225 | 5.3 | AAATAATAACCATTACTATTT |
| -125 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -219 | 4.9 | GAGCGATAATCATTCTCATCT |
| -126 | 5.6 | AATTGAAAACTATTCTCGTTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -218 | 4.8 | TAGTGATAATCGTTCTCACAA |
| -125 | 5.6 | AATTGAAAACTATTATCGTTT | ||
|
Position: -60
Score: 5.4 Sequence: GACTGAGAATGGTTTTCATTT
Locus tag: Sama_1270
|
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| Sama_1270 | -60 | 5.4 | GACTGAGAATGGTTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2841 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2841 | -60 | 5.4 | GACTGATAATAGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1534 | -59 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_2565 | -59 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_2609 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_2447 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_2517 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella baltica OS155 | Sbal_1657 | -63 | 5.4 | GACTGATAATAGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_1270 | -60 | 5.4 | GACTGAGAATGGTTTTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2627 | -104 | 5.5 | GAACGATAATGATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2698 | -103 | 5.8 | TAACGATAATGATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_3175 | -56 | 6.1 | AATTGATAACGATTTTCATTT |
|
Position: -54
Score: 5 Sequence: CATTGAGAGTAATTATCATTA
Locus tag: Sama_1394
|
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| Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |
|
Position: -32
Score: 4.8 Sequence: GAATAACAACCGTTCGCATTT
Locus tag: Sama_1718
|
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| Sama_1718 | -32 | 4.8 | GAATAACAACCGTTCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2426 | ||||
| Ortholog function: Two component transcriptional regulator, Winged helix family | ||||
| Shewanella oneidensis MR-1 | SO2426 | -2 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1941 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_2064 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1959 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1904 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_2074 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella baltica OS155 | Sbal_2050 | -32 | 5.1 | AAATGATATAGATTCTCGTTT |
| Shewanella denitrificans OS217 | Sden_1906 | 10 | 5.6 | TAATGAAAATGGTTATCGTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2150 | -32 | 5.6 | TAATGGTAATCGTTATCATTA |
| Shewanella amazonensis SB2B | Sama_1718 | -32 | 4.8 | GAATAACAACCGTTCGCATTT |
| Shewanella loihica PV-4 | Shew_1936 | -31 | 6 | TAATGATAACTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_2236 | -34 | 5.3 | TAATGCGAATTATTCGTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2220 | -34 | 5.6 | AAATGAAAATGATTCGCATTG |
| Shewanella piezotolerans WP3 | swp_2595 | -9 | 5.5 | CAATGATAATTGTTCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2316 | -34 | 5.5 | AAATGATAACAGTTCGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2294 | -36 | 5.4 | TGTTGATAATTGTTCGCATTT |
|
Position: -52
Score: 6 Sequence: ATATGATAACTATTCTCATTT
Locus tag: Sama_1788
|
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| Sama_1788 | -52 | 6 | ATATGATAACTATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_2008 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1997 | -63 | 5.9 | TGTTGATAATAATTATCATTT |
| Shewanella sp MR-4 | Shewmr4_2003 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella sp MR-7 | Shewmr7_1972 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella baltica OS155 | Sbal_4484 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella baltica OS155 | Sbal_2198 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella denitrificans OS217 | Sden_1854 | -36 | 6 | AAATAAAAACCATTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2008 | -116 | 6 | AATTGATAACTATTCTCATTA |
| Shewanella amazonensis SB2B | Sama_1788 | -52 | 6 | ATATGATAACTATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2212 | -117 | 6.1 | TATTGATAATCATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2195 | -62 | 5.9 | TGTTGATAATCATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2208 | -64 | 5.8 | CATTGATAATCATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2428 | -62 | 5.9 | AGTTGATAACCATTCTCATTT |
|
Position: -40
Score: 5.6 Sequence: TAATGCGAATCATTTTTATTT
Locus tag: Sama_1866
|
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| Sama_1866 | -40 | 5.6 | TAATGCGAATCATTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_1866 | ||||
| Ortholog function: Probable two-component system sensor kinase | ||||
| Shewanella amazonensis SB2B | Sama_1866 | -40 | 5.6 | TAATGCGAATCATTTTTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2007 | -38 | 5.1 | TGGTGAGAACGATTATTATTA |
| Shewanella woodyi ATCC 51908 | Swoo_2596 | -48 | 5.6 | AATTGCGAACAATTATCATTA |
|
Position: -42
Score: 5.5 Sequence: TAATGAGATTTATTTGCATTA
Locus tag: Sama_1896
|
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| Sama_1896 | -42 | 5.5 | TAATGAGATTTATTTGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2039 | ||||
| Ortholog function: Signalling protein with EAL domain | ||||
| Shewanella oneidensis MR-1 | SO2039 | -44 | 5.6 | AAATGCGAATAATTAGCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_2106 | -48 | 4.9 | AAATGCAAATAATAAGCAATT |
| Shewanella sp W3-18-1 | Sputw3181_1906 | -48 | 4.9 | AAATGCAAATAATAAGCAATT |
| Shewanella sp ANA-3 | Shewana3_2237 | -44 | 5 | AAATGCGAATAATTAGCGATT |
| Shewanella sp MR-4 | Shewmr4_2112 | -42 | 5 | AAATGCGAATAATTAGCGATT |
| Shewanella sp MR-7 | Shewmr7_1862 | -44 | 5.6 | AAATGCGAATAATTAGCAATT |
| Shewanella baltica OS155 | Sbal_2274 | -46 | 5.3 | AAATGCGAATAATTAGTATTA |
| Shewanella baltica OS155 | Sbal_4560 | -46 | 5.3 | AAATGCGAATAATTAGTATTA |
| Shewanella denitrificans OS217 | Sden_1592 | -44 | 5.2 | AAATAGGAATAATTAGCATTA |
| Shewanella amazonensis SB2B | Sama_1896 | -42 | 5.5 | TAATGAGATTTATTTGCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1861 | -35 | 5.2 | TAATATAAACAATTATCATTT |
| Shewanella piezotolerans WP3 | swp_2763 | 29 | 5.6 | TAATGTTAATAATTATCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_1968 | -56 | 5 | TAATGTGAATAATTACTATTT |
|
Position: -122
Score: 4.7 Sequence: CAATAAGAATAATTAGCCTTT
Locus tag: Sama_2530
|
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| Sama_2530 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin subunit 2 | ||||
| Shewanella oneidensis MR-1 | SO1111 | -125 | 5.2 | TAATGAGAATGCTTTTAATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-4 | Shewmr4_0944 | -124 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-7 | Shewmr7_0982 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella baltica OS155 | Sbal_0932 | -126 | 5.3 | AAATGAGAATGGTTGTTATCA |
| Shewanella denitrificans OS217 | Sden_0990 | -120 | 5.6 | TAATGATAATGGTTATCACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -121 | 6 | TAATGATAATAGTTATCAATT |
| Shewanella amazonensis SB2B | Sama_2530 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT |
| Shewanella loihica PV-4 | Shew_2873 | -115 | 4.8 | GAATGAGAACGATTTTCTTTG |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -121 | 4.3 | TAGTGATAATGAAAATCACTA |
| -88 | 4.3 | TGTTGATATTTAACCTTATTT | ||
| Shewanella piezotolerans WP3 | swp_1175 | -118 | 5.5 | TAATGATAATAATTATCTTTA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -137 | 4.6 | TAATGGGAATGATTATCTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -167 | 4.5 | AAATGATAATGCTTAATGTTA |
|
Position: -84
Score: 5.4 Sequence: TAATGCGAACTATTTTCATAT
Locus tag: Sama_2655
|
||||
| Sama_2655 | -84 | 5.4 | TAATGCGAACTATTTTCATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella sp ANA-3 | Shewana3_0919 | -84 | 4.9 | TAATGATAATGATTTGCGTTG |
| Shewanella sp MR-4 | Shewmr4_0920 | -84 | 4.9 | TAATGATAATGATTTGCGTTG |
| Shewanella sp MR-7 | Shewmr7_0955 | -84 | 4.9 | TAATGATAATGATTTGCGTTG |
| Shewanella baltica OS155 | Sbal_0904 | -83 | 4.8 | TAATGATAACGATTTGCGTTG |
| Shewanella amazonensis SB2B | Sama_2655 | -84 | 5.4 | TAATGCGAACTATTTTCATAT |
|
Position: -73
Score: 4.8 Sequence: TGGTGAGAATTACTCTCAATT
Locus tag: Sama_2808
|
||||
| Sama_2808 | -73 | 4.8 | TGGTGAGAATTACTCTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1188 | ||||
| Ortholog function: Inner membrane protein with PepSY TM helix | ||||
| Shewanella oneidensis MR-1 | SO1188 | -185 | 5.4 | TTTTGATAATAAATATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2850 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_1054 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp ANA-3 | Shewana3_1014 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-4 | Shewmr4_1010 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-7 | Shewmr7_1075 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella baltica OS155 | Sbal_3255 | -45 | 5.4 | ATTTGATAATCGATCTCATTT |
| Shewanella denitrificans OS217 | Sden_2152 | -58 | 5.8 | TATTGAGATTCATTATCATTT |
| Shewanella amazonensis SB2B | Sama_2808 | -73 | 4.8 | TGGTGAGAATTACTCTCAATT |
| Shewanella piezotolerans WP3 | swp_3069 | -102 | 4.3 | TGATCATAATTGTTTTAAATC |
|
Position: -68
Score: 5.7 Sequence: AATTGAGAATTATTCTCAACA
Locus tag: Sama_2875
|
||||
| Sama_2875 | -68 | 5.7 | AATTGAGAATTATTCTCAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_2875 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella amazonensis SB2B | Sama_2875 | -68 | 5.7 | AATTGAGAATTATTCTCAACA |
| Shewanella piezotolerans WP3 | swp_0926 | -94 | 5.6 | TGTTGAGATTAATTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0946 | -81 | 5.9 | AATTGATAATCGTTATCAATT |
|
Position: -59
Score: 5.5 Sequence: TGATGAGAACGGTTTTTATTT
Locus tag: Sama_3040
|
||||
| Sama_3040 | -59 | 5.5 | TGATGAGAACGGTTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Shewanella oneidensis MR-1 | SO0583 | -55 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3295 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0646 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_0581 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_0582 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_3448 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella baltica OS155 | Sbal_0542 | -53 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella denitrificans OS217 | Sden_3217 | -99 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3324 | -76 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_3040 | -59 | 5.5 | TGATGAGAACGGTTTTTATTT |
| Shewanella pealeana ATCC 700345 | Spea_3555 | -58 | 5.8 | CATTGAGAATCATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3649 | -58 | 5.5 | CACTGAGAATCATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_0771 | -86 | 5.3 | GATTGATAACTATTCTCATCA |
| -57 | 5.6 | CATTGAGAATCGTTTTCATTT | ||
|
Position: -72
Score: 5.8 Sequence: AATTGAGAATGTTTATCATTT
Locus tag: Sama_3409
|
||||
| Sama_3409 | -72 | 5.8 | AATTGAGAATGTTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3406 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella denitrificans OS217 | Sden_2355 | -75 | 5.2 | GAATAAAAACAGTTCTCAATT |
| Shewanella amazonensis SB2B | Sama_3409 | -72 | 5.8 | AATTGAGAATGTTTATCATTT |
|
Position: -65
Score: 6 Sequence: TAATGATAATTATTTTTATTT
Locus tag: Sama_3412
|
||||
| Sama_3412 | -65 | 6 | TAATGATAATTATTTTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3064 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella amazonensis SB2B | Sama_3412 | -65 | 6 | TAATGATAATTATTTTTATTT |
| Shewanella amazonensis SB2B | Sama_3412 | -65 | 6 | TAATGATAATTATTTTTATTT |
|
Position: -81
Score: 5.7 Sequence: AAATGCTATCAATTCTCATTT
Locus tag: Sama_3545
|
||||
| Sama_3545 | -81 | 5.7 | AAATGCTATCAATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4700 | ||||
| Ortholog function: Hypothetical outer membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4700 | -86 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp ANA-3 | Shewana3_4052 | -86 | 4.8 | AAATCGAATCCATTCTCATTA |
| Shewanella sp MR-4 | Shewmr4_3843 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp MR-7 | Shewmr7_3936 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella baltica OS155 | Sbal_0123 | -86 | 4.5 | AAATCGAATCAATTCGCATTA |
| Shewanella denitrificans OS217 | Sden_3594 | -123 | 4.7 | AAATAAGACTGGTTTGTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3875 | -80 | 5.3 | AAACGAGACTGATTATCATTT |
| Shewanella loihica PV-4 | Shew_3658 | -83 | 5.3 | AAATGCAACCAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4066 | 7 | 5 | AAATACGAGCTATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0192 | -87 | 4.4 | AAATACGTCCCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_4927 | -86 | 5 | AAATACAACCGATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0144 | -97 | 5.5 | AAATGGGAAGTGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0123 | -85 | 5.2 | AAATACAAAGCGTTATCATTT |
|
Position: -50
Score: 5.9 Sequence: AAGTGATAACTATTATCATTT
Locus tag: Sama_3636
|
||||
| Sama_3636 | -50 | 5.9 | AAGTGATAACTATTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4740 | ||||
| Ortholog function: Conserved hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4740 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3921 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp W3-18-1 | Sputw3181_4047 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp ANA-3 | Shewana3_4124 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-4 | Shewmr4_3919 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-7 | Shewmr7_4011 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella baltica OS155 | Sbal_4341 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella denitrificans OS217 | Sden_3706 | -50 | 6 | TATTGATAACGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4031 | -46 | 6 | TAATGAGAACTGTTATCATTT |
| Shewanella amazonensis SB2B | Sama_3636 | -50 | 5.9 | AAGTGATAACTATTATCATTT |
| Shewanella loihica PV-4 | Shew_3815 | -46 | 6.5 | AAATGATAATAATTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4226 | -47 | 5.9 | AAATGAGAAGCGTTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4274 | -47 | 6.3 | AAATGATAACCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_5137 | -46 | 6.1 | AAATGATAATCGTTATCATCT |
| Shewanella sediminis HAW-EB3 | Ssed_4479 | -47 | 6.1 | AGATGAGAATAGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4887 | -50 | 6.3 | AAATGAGAACCATTATCATTT |
|
Position: -73
Score: 5.9 Sequence: AAATGCTAATCATTATCAATT
Locus tag: Sama_3641
|
||||
| Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -116 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_4127 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-4 | Shewmr4_3922 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella baltica OS155 | Sbal_4363 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT |
| Shewanella amazonensis SB2B | Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT |
| Shewanella loihica PV-4 | Shew_3841 | -69 | 6 | AAATAAAAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -68 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella piezotolerans WP3 | swp_5150 | -68 | 5.6 | GAATAAAAACAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4483 | -66 | 6 | AAATAAAAACGATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -67 | 6.2 | AAATAAAAATAATTCTCATTT |