Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Shewanella amazonensis SB2B

Reference regulog properties
Source regulog: Fur - Shewanellaceae
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria
Propagated regulon:
Target genome Shewanella amazonensis SB2B
Orthologous TF(s) Sama_1434
Regulated genes 23
Built upon 505 sites [see more]
Predicted regulatory interactions in Shewanella amazonensis SB2B
Locus tag Position Score Sequence
Position: -113
Score: 5.1
Sequence: TAATGATAAGTGTTACTATTT
Locus tag: Sama_0141
Sama_0141 -113 5.1 TAATGATAAGTGTTACTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftn
Ortholog function: Ferritin, Ftn
Shewanella oneidensis MR-1 SO0139 -133 5.7 AAATGAAAATCATTTTTATCA
Shewanella putrefaciens CN-32 Sputcn32_0132 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp W3-18-1 Sputw3181_3940 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp ANA-3 Shewana3_0132 -132 5.7 AAATGAAAATCATTTTTATCA
Shewanella sp MR-4 Shewmr4_0133 -132 5.4 AAATGCAAATCATTTTTATCA
Shewanella sp MR-7 Shewmr7_0127 -132 5.4 AAATGCAAATCATTTTTATCA
Shewanella baltica OS155 Sbal_4222 -131 5.7 AAATGAAAATCATTTTTATCA
Shewanella amazonensis SB2B Sama_0141 -113 5.1 TAATGATAAGTGTTACTATTT
Shewanella loihica PV-4 Shew_0042 -381 5.4 TAACGATAATTATTTGCATTT
Shewanella pealeana ATCC 700345 Spea_0129 -111 6 AAATGAAAACCATTATTATTT
Shewanella halifaxensis HAW-EB4 Shal_4189 -111 6 AAATGAAAACCATTATTATTT
Shewanella piezotolerans WP3 swp_0167 -110 6 AAATGAAAACCATTATTATTT
Shewanella sediminis HAW-EB3 Ssed_4374 -107 5.7 TAATGATAATTATTAGTATTT
Shewanella woodyi ATCC 51908 Swoo_4766 -176 5.7 TAATGAGAATTATTTGTATTT
Position: -84
Score: 5.1
Sequence: CAATGCGAATCGTTTGCATTT
Locus tag: Sama_0589
Sama_0589 -84 5.1 CAATGCGAATCGTTTGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_4035
Ortholog function: Conserved hypothetical signal peptide protein, possibly porin
Shewanella baltica OS155 Sbal_2014 -93 5.4 AAATGCGAATTGTTTGCATTA
Shewanella denitrificans OS217 Sden_0638 -91 5.1 AAATACGAATAGTTTGCATTA
Shewanella frigidimarina NCIMB 400 Sfri_4035 -106 5.6 TAATGATAATGGTTTGCATTA
Shewanella amazonensis SB2B Sama_0589 -84 5.1 CAATGCGAATCGTTTGCATTT
Shewanella loihica PV-4 Shew_3120 -84 5.7 TAATGATAATAGTTTGCATTA
Shewanella pealeana ATCC 700345 Spea_0712 -82 5.6 TAATGATAACGATTTGCATTA
Shewanella piezotolerans WP3 swp_4367 -81 6 AAATGAGAATAATTTGCATTA
Shewanella sediminis HAW-EB3 Ssed_3889 -83 5.6 AAATGATAACCGTTTGCATTA
Shewanella woodyi ATCC 51908 Swoo_3788 -83 5.4 GAATGATAACAATTTGCATTA
Position: -2
Score: 5.9
Sequence: AAATGATAACTATTGTCATTA
Locus tag: Sama_0590
Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_0590
Ortholog function: TonB-dependent receptor
Shewanella sp MR-4 Shewmr4_0630 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella sp MR-7 Shewmr7_3399 -62 5 TAACGAGAATAATTCTTGTTT
Shewanella amazonensis SB2B Sama_0590 -2 5.9 AAATGATAACTATTGTCATTA
Shewanella pealeana ATCC 700345 Spea_0713 -66 5.5 AAATGATAATCAATCCCATTA
Shewanella halifaxensis HAW-EB4 Shal_0766 -67 5.6 AAATGAGAATGAATAGCATTA
Shewanella sediminis HAW-EB3 Ssed_3888 -84 5.5 AAATGATAACCACTCTCATTA
Shewanella woodyi ATCC 51908 Swoo_3787 -2 5.5 AAATGATAATCAATCCCATTA
Position: -57
Score: 5.8
Sequence: TAGTGATAATAATTATCATTA
Locus tag: Sama_0666
Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fbpA
Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA
Shewanella oneidensis MR-1 SO0744 -76 5.7 AACTGATAACTATTATCATTA
Shewanella putrefaciens CN-32 Sputcn32_3227 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp W3-18-1 Sputw3181_0714 -74 5.8 AAGTGATAACTATTATCATTA
Shewanella sp ANA-3 Shewana3_3517 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-4 Shewmr4_3347 -76 5.7 AACTGATAACTATTATCATTA
Shewanella sp MR-7 Shewmr7_0606 -76 5.7 AACTGATAACTATTATCATTA
Shewanella baltica OS155 Sbal_0812 -76 5.4 AACTGATAAGCATTATCATTA
Shewanella frigidimarina NCIMB 400 Sfri_0636 -67 5.9 AATTGATAACCATTATCAATT
Shewanella amazonensis SB2B Sama_0666 -57 5.8 TAGTGATAATAATTATCATTA
Shewanella loihica PV-4 Shew_0861 -41 6.1 AATTGATAATTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_0844 -60 5.8 AATTGAGAATTATTATCAGTT
Shewanella halifaxensis HAW-EB4 Shal_0897 -64 5.4 AATTGAGAATTATTATCAGTC
Shewanella piezotolerans WP3 swp_4107 -60 5.2 AATTGAGAACTATTATCAGCA
Shewanella sediminis HAW-EB3 Ssed_0945 -58 5.7 GATTGATAATAATTATCATTA
Shewanella woodyi ATCC 51908 Swoo_0996 -57 5.4 AATTGATAACTATTATCATCG
Position: -38
Score: 5.4
Sequence: AGATGAAAACCATTCTCGTTA
Locus tag: Sama_0949
Sama_0949 -38 5.4 AGATGAAAACCATTCTCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sputcn32_2703
Ortholog function: Cytochrome B561
Shewanella putrefaciens CN-32 Sputcn32_2703 -60 4.6 TTATGATAATGGATATTGTTT
Shewanella sp W3-18-1 Sputw3181_1308 -60 4.6 TTATGATAATGGATATTGTTT
Shewanella sp ANA-3 Shewana3_1178 -59 5 TTATGATAATGACTATTATTT
Shewanella sp MR-4 Shewmr4_1177 -59 5 TTATGATAATGACTATTATTT
Shewanella sp MR-7 Shewmr7_1248 -59 5 TTATGATAATGACTATTATTT
Shewanella baltica OS155 Sbal_3042 -61 5.3 TTATGATAATGAATATTATTT
Shewanella amazonensis SB2B Sama_0949 -38 5.4 AGATGAAAACCATTCTCGTTA
Position: -297
Score: 5.6
Sequence: TAACGATAATAATTTTCAATT
Locus tag: Sama_1213
Sama_1213 -297 5.6 TAACGATAATAATTTTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtrD
Ortholog function: Periplasmic decaheme cytochrome c, MtrD
Shewanella oneidensis MR-1 SO1782 -370 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp ANA-3 Shewana3_2672 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp MR-4 Shewmr4_2506 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella sp MR-7 Shewmr7_2574 -326 5.4 TAACGATAATAGTTTTCAATT
Shewanella baltica OS155 Sbal_1593 -335 5.4 TAACGATAATAGTTTTCAATT
Shewanella amazonensis SB2B Sama_1213 -297 5.6 TAACGATAATAATTTTCAATT
-150 4.7 AAATCAGACTAATTATTAATA
Shewanella loihica PV-4 Shew_2519 -291 5.7 AAACGATAATAATTTTCAATT
-222 5.8 AAATGAGAACCATTTTCATTG
Shewanella pealeana ATCC 700345 Spea_2692 -317 5.7 AAACGATAATAATTTTCAATT
-252 5.1 AATTAAGAATGGTTACTATTT
Shewanella halifaxensis HAW-EB4 Shal_2778 -336 5.7 AAACGATAATAATTTTCAATT
Shewanella piezotolerans WP3 swp_3272 -339 5.7 AAACGATAATAATTTTCAATT
-239 5.3 AAATAGTAATGGTTATTATTT
Shewanella sediminis HAW-EB3 Ssed_1530 -322 5.6 AAACGAGAATAGTTTTCAATT
-229 4.9 AGATGAGAATGATTATCGCTC
-110 4.8 AGATAAAAATGTTACTCATTT
Position: -119
Score: 5.6
Sequence: AATTGAAAATTATTATCGTTA
Locus tag: Sama_1214
Sama_1214 -119 5.6 AATTGAAAATTATTATCGTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoA
Ortholog function: Ferrous iron transport protein A
Shewanella oneidensis MR-1 SO1783 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella putrefaciens CN-32 Sputcn32_1480 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp W3-18-1 Sputw3181_2621 -123 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp ANA-3 Shewana3_2671 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-4 Shewmr4_2505 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella sp MR-7 Shewmr7_2573 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella baltica OS155 Sbal_1594 -121 5.4 AATTGAAAACTATTATCGTTA
Shewanella denitrificans OS217 Sden_2415 -116 5.4 AATTGAAAACTATTATCGTTA
Shewanella frigidimarina NCIMB 400 Sfri_2617 -111 5.1 AACTGAAAACTATTCTCGTTA
Shewanella amazonensis SB2B Sama_1214 -119 5.6 AATTGAAAATTATTATCGTTA
Shewanella loihica PV-4 Shew_2518 -192 5.8 CAATGAAAATGGTTCTCATTT
-123 5.7 AATTGAAAATTATTATCGTTT
Shewanella pealeana ATCC 700345 Spea_2691 -191 5.1 AAATAGTAACCATTCTTAATT
-126 5.7 AATTGAAAATTATTATCGTTT
Shewanella halifaxensis HAW-EB4 Shal_2777 -126 5.7 AATTGAAAATTATTATCGTTT
Shewanella piezotolerans WP3 swp_3271 -225 5.3 AAATAATAACCATTACTATTT
-125 5.7 AATTGAAAATTATTATCGTTT
Shewanella sediminis HAW-EB3 Ssed_1531 -219 4.9 GAGCGATAATCATTCTCATCT
-126 5.6 AATTGAAAACTATTCTCGTTT
Shewanella woodyi ATCC 51908 Swoo_3123 -218 4.8 TAGTGATAATCGTTCTCACAA
-125 5.6 AATTGAAAACTATTATCGTTT
Position: -60
Score: 5.4
Sequence: GACTGAGAATGGTTTTCATTT
Locus tag: Sama_1270
Sama_1270 -60 5.4 GACTGAGAATGGTTTTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2841
Ortholog function: Hypothetical protein
Shewanella oneidensis MR-1 SO2841 -60 5.4 GACTGATAATAGTTTTCATTT
Shewanella putrefaciens CN-32 Sputcn32_1534 -59 5.6 GACTGATAATAATTTTCATTT
Shewanella sp W3-18-1 Sputw3181_2565 -59 5.6 GACTGATAATAATTTTCATTT
Shewanella sp ANA-3 Shewana3_2609 -71 5.6 GACTGATAATAATTTTCATTT
Shewanella sp MR-4 Shewmr4_2447 -71 5.6 GACTGATAATAATTTTCATTT
Shewanella sp MR-7 Shewmr7_2517 -71 5.6 GACTGATAATAATTTTCATTT
Shewanella baltica OS155 Sbal_1657 -63 5.4 GACTGATAATAGTTTTCATTT
Shewanella amazonensis SB2B Sama_1270 -60 5.4 GACTGAGAATGGTTTTCATTT
Shewanella pealeana ATCC 700345 Spea_2627 -104 5.5 GAACGATAATGATTTTCATTT
Shewanella halifaxensis HAW-EB4 Shal_2698 -103 5.8 TAACGATAATGATTTTCATTT
Shewanella piezotolerans WP3 swp_3175 -56 6.1 AATTGATAACGATTTTCATTT
Position: -54
Score: 5
Sequence: CATTGAGAGTAATTATCATTA
Locus tag: Sama_1394
Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4423.1
Ortholog function: TonB-dependent ferric achromobactin receptor
Shewanella oneidensis MR-1 SO4423.1 -98 5.4 TAATAAAAATCGTTACCATTT
Shewanella putrefaciens CN-32 Sputcn32_0401 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp W3-18-1 Sputw3181_0255 -97 5.6 TAACGAAAATCGTTATCATTT
Shewanella sp ANA-3 Shewana3_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-4 Shewmr4_0286 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella sp MR-7 Shewmr7_3733 -98 5.5 CAATAAAAATCGTTATCATTT
Shewanella baltica OS155 Sbal_0298 -100 5.6 GAATAAAAATCGTTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_0392 -54 5.9 TAATGATAATGAATATCATTA
Shewanella amazonensis SB2B Sama_1394 -54 5 CATTGAGAGTAATTATCATTA
Shewanella loihica PV-4 Shew_1688 -72 4.9 ATATGATAATCTATATCATTC
Shewanella pealeana ATCC 700345 Spea_0977 -108 5.3 AAACACTAATCATTATCATTT
Shewanella piezotolerans WP3 swp_1134 -108 5.2 CAACAATAATCATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_1496 -51 4.9 AATCGAGAATGGTTATCATCC
Shewanella woodyi ATCC 51908 Swoo_0587 -62 5.9 TAATGGGAATAATTATCATTT
Position: -32
Score: 4.8
Sequence: GAATAACAACCGTTCGCATTT
Locus tag: Sama_1718
Sama_1718 -32 4.8 GAATAACAACCGTTCGCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2426
Ortholog function: Two component transcriptional regulator, Winged helix family
Shewanella oneidensis MR-1 SO2426 -2 5.6 AAATGATATTGATTCTCGTTT
Shewanella putrefaciens CN-32 Sputcn32_1941 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp W3-18-1 Sputw3181_2064 -2 5.5 AAATGATATCGATTCTCGTTT
Shewanella sp ANA-3 Shewana3_1959 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-4 Shewmr4_1904 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella sp MR-7 Shewmr7_2074 -32 5.6 AAATGATATTGATTCTCGTTT
Shewanella baltica OS155 Sbal_2050 -32 5.1 AAATGATATAGATTCTCGTTT
Shewanella denitrificans OS217 Sden_1906 10 5.6 TAATGAAAATGGTTATCGTTT
Shewanella frigidimarina NCIMB 400 Sfri_2150 -32 5.6 TAATGGTAATCGTTATCATTA
Shewanella amazonensis SB2B Sama_1718 -32 4.8 GAATAACAACCGTTCGCATTT
Shewanella loihica PV-4 Shew_1936 -31 6 TAATGATAACTATTATCATTA
Shewanella pealeana ATCC 700345 Spea_2236 -34 5.3 TAATGCGAATTATTCGTATTT
Shewanella halifaxensis HAW-EB4 Shal_2220 -34 5.6 AAATGAAAATGATTCGCATTG
Shewanella piezotolerans WP3 swp_2595 -9 5.5 CAATGATAATTGTTCGCATTT
Shewanella sediminis HAW-EB3 Ssed_2316 -34 5.5 AAATGATAACAGTTCGTATTT
Shewanella woodyi ATCC 51908 Swoo_2294 -36 5.4 TGTTGATAATTGTTCGCATTT
Position: -52
Score: 6
Sequence: ATATGATAACTATTCTCATTT
Locus tag: Sama_1788
Sama_1788 -52 6 ATATGATAACTATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sfri_2008
Ortholog function: Hypothetical protein
Shewanella putrefaciens CN-32 Sputcn32_1997 -63 5.9 TGTTGATAATAATTATCATTT
Shewanella sp MR-4 Shewmr4_2003 -59 5.7 TGTTGATAACTATTCTCATTT
Shewanella sp MR-7 Shewmr7_1972 -59 5.7 TGTTGATAACTATTCTCATTT
Shewanella baltica OS155 Sbal_4484 -165 4.7 AAATAAAAATAATGATCACAT
-63 5.6 TGTTGATAACAGTTATCATTT
Shewanella baltica OS155 Sbal_2198 -165 4.7 AAATAAAAATAATGATCACAT
-63 5.6 TGTTGATAACAGTTATCATTT
Shewanella denitrificans OS217 Sden_1854 -36 6 AAATAAAAACCATTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_2008 -116 6 AATTGATAACTATTCTCATTA
Shewanella amazonensis SB2B Sama_1788 -52 6 ATATGATAACTATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_2212 -117 6.1 TATTGATAATCATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_2195 -62 5.9 TGTTGATAATCATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_2208 -64 5.8 CATTGATAATCATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_2428 -62 5.9 AGTTGATAACCATTCTCATTT
Position: -40
Score: 5.6
Sequence: TAATGCGAATCATTTTTATTT
Locus tag: Sama_1866
Sama_1866 -40 5.6 TAATGCGAATCATTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_1866
Ortholog function: Probable two-component system sensor kinase
Shewanella amazonensis SB2B Sama_1866 -40 5.6 TAATGCGAATCATTTTTATTT
Shewanella sediminis HAW-EB3 Ssed_2007 -38 5.1 TGGTGAGAACGATTATTATTA
Shewanella woodyi ATCC 51908 Swoo_2596 -48 5.6 AATTGCGAACAATTATCATTA
Position: -42
Score: 5.5
Sequence: TAATGAGATTTATTTGCATTA
Locus tag: Sama_1896
Sama_1896 -42 5.5 TAATGAGATTTATTTGCATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO2039
Ortholog function: Signalling protein with EAL domain
Shewanella oneidensis MR-1 SO2039 -44 5.6 AAATGCGAATAATTAGCAATT
Shewanella putrefaciens CN-32 Sputcn32_2106 -48 4.9 AAATGCAAATAATAAGCAATT
Shewanella sp W3-18-1 Sputw3181_1906 -48 4.9 AAATGCAAATAATAAGCAATT
Shewanella sp ANA-3 Shewana3_2237 -44 5 AAATGCGAATAATTAGCGATT
Shewanella sp MR-4 Shewmr4_2112 -42 5 AAATGCGAATAATTAGCGATT
Shewanella sp MR-7 Shewmr7_1862 -44 5.6 AAATGCGAATAATTAGCAATT
Shewanella baltica OS155 Sbal_2274 -46 5.3 AAATGCGAATAATTAGTATTA
Shewanella baltica OS155 Sbal_4560 -46 5.3 AAATGCGAATAATTAGTATTA
Shewanella denitrificans OS217 Sden_1592 -44 5.2 AAATAGGAATAATTAGCATTA
Shewanella amazonensis SB2B Sama_1896 -42 5.5 TAATGAGATTTATTTGCATTA
Shewanella halifaxensis HAW-EB4 Shal_1861 -35 5.2 TAATATAAACAATTATCATTT
Shewanella piezotolerans WP3 swp_2763 29 5.6 TAATGTTAATAATTATCATTA
Shewanella sediminis HAW-EB3 Ssed_1968 -56 5 TAATGTGAATAATTACTATTT
Position: -122
Score: 4.7
Sequence: CAATAAGAATAATTAGCCTTT
Locus tag: Sama_2530
Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfr2
Ortholog function: Bacterioferritin subunit 2
Shewanella oneidensis MR-1 SO1111 -125 5.2 TAATGAGAATGCTTTTAATTA
Shewanella putrefaciens CN-32 Sputcn32_0948 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp W3-18-1 Sputw3181_3228 -126 5.5 AAATGAGAATGGTTTTTATAA
Shewanella sp ANA-3 Shewana3_0946 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-4 Shewmr4_0944 -124 5.4 TAATGAGAATGCTTTTTATCT
Shewanella sp MR-7 Shewmr7_0982 -125 5.4 TAATGAGAATGCTTTTTATCT
Shewanella baltica OS155 Sbal_0932 -126 5.3 AAATGAGAATGGTTGTTATCA
Shewanella denitrificans OS217 Sden_0990 -120 5.6 TAATGATAATGGTTATCACTA
Shewanella frigidimarina NCIMB 400 Sfri_0957 -121 6 TAATGATAATAGTTATCAATT
Shewanella amazonensis SB2B Sama_2530 -122 4.7 CAATAAGAATAATTAGCCTTT
Shewanella loihica PV-4 Shew_2873 -115 4.8 GAATGAGAACGATTTTCTTTG
Shewanella pealeana ATCC 700345 Spea_3095 -116 5.4 TAATGAGAATGGTTATCTTTA
Shewanella halifaxensis HAW-EB4 Shal_3179 -121 4.3 TAGTGATAATGAAAATCACTA
-88 4.3 TGTTGATATTTAACCTTATTT
Shewanella piezotolerans WP3 swp_1175 -118 5.5 TAATGATAATAATTATCTTTA
Shewanella sediminis HAW-EB3 Ssed_2230 -137 4.6 TAATGGGAATGATTATCTCTA
Shewanella woodyi ATCC 51908 Swoo_3608 -167 4.5 AAATGATAATGCTTAATGTTA
Position: -84
Score: 5.4
Sequence: TAATGCGAACTATTTTCATAT
Locus tag: Sama_2655
Sama_2655 -84 5.4 TAATGCGAACTATTTTCATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2655
Ortholog function: Conserved hypothetical protein
Shewanella sp ANA-3 Shewana3_0919 -84 4.9 TAATGATAATGATTTGCGTTG
Shewanella sp MR-4 Shewmr4_0920 -84 4.9 TAATGATAATGATTTGCGTTG
Shewanella sp MR-7 Shewmr7_0955 -84 4.9 TAATGATAATGATTTGCGTTG
Shewanella baltica OS155 Sbal_0904 -83 4.8 TAATGATAACGATTTGCGTTG
Shewanella amazonensis SB2B Sama_2655 -84 5.4 TAATGCGAACTATTTTCATAT
Position: -73
Score: 4.8
Sequence: TGGTGAGAATTACTCTCAATT
Locus tag: Sama_2808
Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1188
Ortholog function: Inner membrane protein with PepSY TM helix
Shewanella oneidensis MR-1 SO1188 -185 5.4 TTTTGATAATAAATATCATTT
Shewanella putrefaciens CN-32 Sputcn32_2850 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp W3-18-1 Sputw3181_1054 -93 5.2 GTTTGATAATAAATATCATTT
Shewanella sp ANA-3 Shewana3_1014 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-4 Shewmr4_1010 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella sp MR-7 Shewmr7_1075 -181 5.6 TGTTGATAATAAATATCATTT
Shewanella baltica OS155 Sbal_3255 -45 5.4 ATTTGATAATCGATCTCATTT
Shewanella denitrificans OS217 Sden_2152 -58 5.8 TATTGAGATTCATTATCATTT
Shewanella amazonensis SB2B Sama_2808 -73 4.8 TGGTGAGAATTACTCTCAATT
Shewanella piezotolerans WP3 swp_3069 -102 4.3 TGATCATAATTGTTTTAAATC
Position: -68
Score: 5.7
Sequence: AATTGAGAATTATTCTCAACA
Locus tag: Sama_2875
Sama_2875 -68 5.7 AATTGAGAATTATTCTCAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sama_2875
Ortholog function: TonB-dependent siderophore receptor
Shewanella amazonensis SB2B Sama_2875 -68 5.7 AATTGAGAATTATTCTCAACA
Shewanella piezotolerans WP3 swp_0926 -94 5.6 TGTTGAGATTAATTATCATTT
Shewanella woodyi ATCC 51908 Swoo_0946 -81 5.9 AATTGATAATCGTTATCAATT
Position: -59
Score: 5.5
Sequence: TGATGAGAACGGTTTTTATTT
Locus tag: Sama_3040
Sama_3040 -59 5.5 TGATGAGAACGGTTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bfd
Ortholog function: Bacterioferritin-associated ferredoxin
Shewanella oneidensis MR-1 SO0583 -55 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella putrefaciens CN-32 Sputcn32_3295 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp W3-18-1 Sputw3181_0646 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp ANA-3 Shewana3_0581 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp MR-4 Shewmr4_0582 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella sp MR-7 Shewmr7_3448 -54 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella baltica OS155 Sbal_0542 -53 5.3 ATTTGATAAGCGTTTTCATTT
Shewanella denitrificans OS217 Sden_3217 -99 5.7 CAATGATAACCGTTTTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_3324 -76 5.7 CAATGATAACCGTTTTCATTT
Shewanella amazonensis SB2B Sama_3040 -59 5.5 TGATGAGAACGGTTTTTATTT
Shewanella pealeana ATCC 700345 Spea_3555 -58 5.8 CATTGAGAATCATTTTCATTT
Shewanella halifaxensis HAW-EB4 Shal_3649 -58 5.5 CACTGAGAATCATTTTCATTT
Shewanella piezotolerans WP3 swp_0771 -86 5.3 GATTGATAACTATTCTCATCA
-57 5.6 CATTGAGAATCGTTTTCATTT
Position: -72
Score: 5.8
Sequence: AATTGAGAATGTTTATCATTT
Locus tag: Sama_3409
Sama_3409 -72 5.8 AATTGAGAATGTTTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO3406
Ortholog function: Conserved hypothetical protein
Shewanella denitrificans OS217 Sden_2355 -75 5.2 GAATAAAAACAGTTCTCAATT
Shewanella amazonensis SB2B Sama_3409 -72 5.8 AATTGAGAATGTTTATCATTT
Position: -65
Score: 6
Sequence: TAATGATAATTATTTTTATTT
Locus tag: Sama_3412
Sama_3412 -65 6 TAATGATAATTATTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: Sden_3064
Ortholog function: TonB-dependent receptor
Shewanella amazonensis SB2B Sama_3412 -65 6 TAATGATAATTATTTTTATTT
Shewanella amazonensis SB2B Sama_3412 -65 6 TAATGATAATTATTTTTATTT
Position: -81
Score: 5.7
Sequence: AAATGCTATCAATTCTCATTT
Locus tag: Sama_3545
Sama_3545 -81 5.7 AAATGCTATCAATTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4700
Ortholog function: Hypothetical outer membrane protein
Shewanella oneidensis MR-1 SO4700 -86 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp ANA-3 Shewana3_4052 -86 4.8 AAATCGAATCCATTCTCATTA
Shewanella sp MR-4 Shewmr4_3843 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella sp MR-7 Shewmr7_3936 -27 5.3 AAATCAAATCCATTCTCATTA
Shewanella baltica OS155 Sbal_0123 -86 4.5 AAATCGAATCAATTCGCATTA
Shewanella denitrificans OS217 Sden_3594 -123 4.7 AAATAAGACTGGTTTGTATTT
Shewanella frigidimarina NCIMB 400 Sfri_3875 -80 5.3 AAACGAGACTGATTATCATTT
Shewanella loihica PV-4 Shew_3658 -83 5.3 AAATGCAACCAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4066 7 5 AAATACGAGCTATTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_0192 -87 4.4 AAATACGTCCCATTATCATTT
Shewanella piezotolerans WP3 swp_4927 -86 5 AAATACAACCGATTATCATTT
Shewanella sediminis HAW-EB3 Ssed_0144 -97 5.5 AAATGGGAAGTGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_0123 -85 5.2 AAATACAAAGCGTTATCATTT
Position: -50
Score: 5.9
Sequence: AAGTGATAACTATTATCATTT
Locus tag: Sama_3636
Sama_3636 -50 5.9 AAGTGATAACTATTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4740
Ortholog function: Conserved hypothetical inner membrane protein
Shewanella oneidensis MR-1 SO4740 -60 6 TAATGAGAATTGTTATCATCT
Shewanella putrefaciens CN-32 Sputcn32_3921 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp W3-18-1 Sputw3181_4047 -59 6 TAATGAGAATTGTTATCATCT
Shewanella sp ANA-3 Shewana3_4124 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-4 Shewmr4_3919 -60 6 TAATGAGAATTGTTATCATCT
Shewanella sp MR-7 Shewmr7_4011 -60 6 TAATGAGAATTGTTATCATCT
Shewanella baltica OS155 Sbal_4341 -59 6 TAATGAGAATTGTTATCATCT
Shewanella denitrificans OS217 Sden_3706 -50 6 TATTGATAACGATTATCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4031 -46 6 TAATGAGAACTGTTATCATTT
Shewanella amazonensis SB2B Sama_3636 -50 5.9 AAGTGATAACTATTATCATTT
Shewanella loihica PV-4 Shew_3815 -46 6.5 AAATGATAATAATTATCATTT
Shewanella pealeana ATCC 700345 Spea_4226 -47 5.9 AAATGAGAAGCGTTATCATTT
Shewanella halifaxensis HAW-EB4 Shal_4274 -47 6.3 AAATGATAACCATTATCATTT
Shewanella piezotolerans WP3 swp_5137 -46 6.1 AAATGATAATCGTTATCATCT
Shewanella sediminis HAW-EB3 Ssed_4479 -47 6.1 AGATGAGAATAGTTATCATTT
Shewanella woodyi ATCC 51908 Swoo_4887 -50 6.3 AAATGAGAACCATTATCATTT
Position: -73
Score: 5.9
Sequence: AAATGCTAATCATTATCAATT
Locus tag: Sama_3641
Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO4743
Ortholog function: TonB-dependent siderophore receptor
Shewanella oneidensis MR-1 SO4743 -116 5.7 AAATAAAAACAATTCTTATTT
Shewanella putrefaciens CN-32 Sputcn32_3953 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp W3-18-1 Sputw3181_4050 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella sp ANA-3 Shewana3_4127 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-4 Shewmr4_3922 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella sp MR-7 Shewmr7_4014 -68 5.7 AAATAAAAACAATTCTTATTT
Shewanella baltica OS155 Sbal_4363 -68 5.6 AAATAAAAACACTTCTCATTT
Shewanella frigidimarina NCIMB 400 Sfri_4042 -68 5.4 AAATGGAAACGCTTCTCATTT
Shewanella amazonensis SB2B Sama_3641 -73 5.9 AAATGCTAATCATTATCAATT
Shewanella loihica PV-4 Shew_3841 -69 6 AAATAAAAACAATTCTCATTT
Shewanella pealeana ATCC 700345 Spea_4236 -69 6 AAATAAAAATAGTTCTCATTT
Shewanella halifaxensis HAW-EB4 Shal_4287 -68 6 AAATAAAAATAGTTCTCATTT
Shewanella piezotolerans WP3 swp_5150 -68 5.6 GAATAAAAACAATTCTCATTT
Shewanella sediminis HAW-EB3 Ssed_4483 -66 6 AAATAAAAACGATTCTCATTT
Shewanella woodyi ATCC 51908 Swoo_4894 -67 6.2 AAATAAAAATAATTCTCATTT
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