Propagation of Fur regulog to Shewanella sp MR-7
| Source regulog: | Fur - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella sp MR-7 |
| Orthologous TF(s) | Shewmr7_1716 |
| Regulated genes | 36 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -132
Score: 5.4 Sequence: AAATGCAAATCATTTTTATCA
Locus tag: Shewmr7_0127
|
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| Shewmr7_0127 | -132 | 5.4 | AAATGCAAATCATTTTTATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ftn | ||||
| Ortholog function: Ferritin, Ftn | ||||
| Shewanella oneidensis MR-1 | SO0139 | -133 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella putrefaciens CN-32 | Sputcn32_0132 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp W3-18-1 | Sputw3181_3940 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp ANA-3 | Shewana3_0132 | -132 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella sp MR-4 | Shewmr4_0133 | -132 | 5.4 | AAATGCAAATCATTTTTATCA |
| Shewanella sp MR-7 | Shewmr7_0127 | -132 | 5.4 | AAATGCAAATCATTTTTATCA |
| Shewanella baltica OS155 | Sbal_4222 | -131 | 5.7 | AAATGAAAATCATTTTTATCA |
| Shewanella amazonensis SB2B | Sama_0141 | -113 | 5.1 | TAATGATAAGTGTTACTATTT |
| Shewanella loihica PV-4 | Shew_0042 | -381 | 5.4 | TAACGATAATTATTTGCATTT |
| Shewanella pealeana ATCC 700345 | Spea_0129 | -111 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4189 | -111 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella piezotolerans WP3 | swp_0167 | -110 | 6 | AAATGAAAACCATTATTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4374 | -107 | 5.7 | TAATGATAATTATTAGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4766 | -176 | 5.7 | TAATGAGAATTATTTGTATTT |
|
Position: -76
Score: 5.7 Sequence: AACTGATAACTATTATCATTA
Locus tag: Shewmr7_0606
|
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| Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fbpA | ||||
| Ortholog function: ABC iron(III) transporter, periplasmic ligand-binding subunit, FbpA | ||||
| Shewanella oneidensis MR-1 | SO0744 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3227 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp W3-18-1 | Sputw3181_0714 | -74 | 5.8 | AAGTGATAACTATTATCATTA |
| Shewanella sp ANA-3 | Shewana3_3517 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-4 | Shewmr4_3347 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella sp MR-7 | Shewmr7_0606 | -76 | 5.7 | AACTGATAACTATTATCATTA |
| Shewanella baltica OS155 | Sbal_0812 | -76 | 5.4 | AACTGATAAGCATTATCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0636 | -67 | 5.9 | AATTGATAACCATTATCAATT |
| Shewanella amazonensis SB2B | Sama_0666 | -57 | 5.8 | TAGTGATAATAATTATCATTA |
| Shewanella loihica PV-4 | Shew_0861 | -41 | 6.1 | AATTGATAATTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0844 | -60 | 5.8 | AATTGAGAATTATTATCAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0897 | -64 | 5.4 | AATTGAGAATTATTATCAGTC |
| Shewanella piezotolerans WP3 | swp_4107 | -60 | 5.2 | AATTGAGAACTATTATCAGCA |
| Shewanella sediminis HAW-EB3 | Ssed_0945 | -58 | 5.7 | GATTGATAATAATTATCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_0996 | -57 | 5.4 | AATTGATAACTATTATCATCG |
|
Position: -62
Score: 6.2 Sequence: AAATAATAATTATTCTCATTT
Locus tag: Shewmr7_0635
|
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| Shewmr7_0635 | -62 | 6.2 | AAATAATAATTATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0798 | ||||
| Ortholog function: TonB-dependent outer membrane receptor | ||||
| Shewanella oneidensis MR-1 | SO0798 | -62 | 6.1 | AAATAATAACAATTCTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3191 | -62 | 5.6 | AAATAATAACCATTCTCATTC |
| Shewanella sp W3-18-1 | Sputw3181_0752 | -62 | 5.6 | AAATAATAACCATTCTCATTC |
| Shewanella sp MR-4 | Shewmr4_3318 | -62 | 6.2 | AAATAATAATTATTCTCATTT |
| Shewanella sp MR-7 | Shewmr7_0635 | -62 | 6.2 | AAATAATAATTATTCTCATTT |
|
Position: -106
Score: 4.8 Sequence: AAATGATAATAATAATTGATT
Locus tag: Shewmr7_0697
|
||||
| Shewmr7_0697 | -106 | 4.8 | AAATGATAATAATAATTGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3914 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO3914 | -108 | 5.1 | AAATGATAATAATTATTGATC |
| Shewanella sp ANA-3 | Shewana3_0716 | -107 | 5.5 | AAATGATAATAATTATTGATT |
| Shewanella sp MR-4 | Shewmr4_3245 | -106 | 5.5 | AAATGATAATAATTATTGATT |
| Shewanella sp MR-7 | Shewmr7_0697 | -106 | 4.8 | AAATGATAATAATAATTGATT |
| Shewanella baltica OS155 | Sbal_3635 | -108 | 4.9 | AAATGATAATAGTTATTGATC |
|
Position: -84
Score: 4.9 Sequence: TAATGATAATGATTTGCGTTG
Locus tag: Shewmr7_0955
|
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| Shewmr7_0955 | -84 | 4.9 | TAATGATAATGATTTGCGTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_2655 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella sp ANA-3 | Shewana3_0919 | -84 | 4.9 | TAATGATAATGATTTGCGTTG |
| Shewanella sp MR-4 | Shewmr4_0920 | -84 | 4.9 | TAATGATAATGATTTGCGTTG |
| Shewanella sp MR-7 | Shewmr7_0955 | -84 | 4.9 | TAATGATAATGATTTGCGTTG |
| Shewanella baltica OS155 | Sbal_0904 | -83 | 4.8 | TAATGATAACGATTTGCGTTG |
| Shewanella amazonensis SB2B | Sama_2655 | -84 | 5.4 | TAATGCGAACTATTTTCATAT |
|
Position: -125
Score: 5.4 Sequence: TAATGAGAATGCTTTTTATCT
Locus tag: Shewmr7_0982
|
||||
| Shewmr7_0982 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfr2 | ||||
| Ortholog function: Bacterioferritin subunit 2 | ||||
| Shewanella oneidensis MR-1 | SO1111 | -125 | 5.2 | TAATGAGAATGCTTTTAATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_0948 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp W3-18-1 | Sputw3181_3228 | -126 | 5.5 | AAATGAGAATGGTTTTTATAA |
| Shewanella sp ANA-3 | Shewana3_0946 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-4 | Shewmr4_0944 | -124 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella sp MR-7 | Shewmr7_0982 | -125 | 5.4 | TAATGAGAATGCTTTTTATCT |
| Shewanella baltica OS155 | Sbal_0932 | -126 | 5.3 | AAATGAGAATGGTTGTTATCA |
| Shewanella denitrificans OS217 | Sden_0990 | -120 | 5.6 | TAATGATAATGGTTATCACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0957 | -121 | 6 | TAATGATAATAGTTATCAATT |
| Shewanella amazonensis SB2B | Sama_2530 | -122 | 4.7 | CAATAAGAATAATTAGCCTTT |
| Shewanella loihica PV-4 | Shew_2873 | -115 | 4.8 | GAATGAGAACGATTTTCTTTG |
| Shewanella pealeana ATCC 700345 | Spea_3095 | -116 | 5.4 | TAATGAGAATGGTTATCTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3179 | -121 | 4.3 | TAGTGATAATGAAAATCACTA |
| -88 | 4.3 | TGTTGATATTTAACCTTATTT | ||
| Shewanella piezotolerans WP3 | swp_1175 | -118 | 5.5 | TAATGATAATAATTATCTTTA |
| Shewanella sediminis HAW-EB3 | Ssed_2230 | -137 | 4.6 | TAATGGGAATGATTATCTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_3608 | -167 | 4.5 | AAATGATAATGCTTAATGTTA |
|
Position: -57
Score: 5.6 Sequence: AAATGCAAATCGTTCTCAATA
Locus tag: Shewmr7_0988
|
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| Shewmr7_0988 | -57 | 5.6 | AAATGCAAATCGTTCTCAATA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_3863 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_3863 | -21 | 5.3 | AAATGAAAACTATTCGTAATA |
| Shewanella sp W3-18-1 | Sputw3181_0090 | -21 | 5.3 | AAATGAAAACTATTCGTAATA |
| Shewanella sp ANA-3 | Shewana3_0952 | -63 | 5.2 | AAATGCAAATCGTTCTCAATG |
| Shewanella sp MR-4 | Shewmr4_0950 | -57 | 5.6 | AAATGCAAATCGTTCTCAATA |
| Shewanella sp MR-7 | Shewmr7_0988 | -57 | 5.6 | AAATGCAAATCGTTCTCAATA |
| Shewanella baltica OS155 | Sbal_2136 | -63 | 4.8 | AAATAAAAGTGATTCGCAATA |
|
Position: -181
Score: 5.6 Sequence: TGTTGATAATAAATATCATTT
Locus tag: Shewmr7_1075
|
||||
| Shewmr7_1075 | -181 | 5.6 | TGTTGATAATAAATATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1188 | ||||
| Ortholog function: Inner membrane protein with PepSY TM helix | ||||
| Shewanella oneidensis MR-1 | SO1188 | -185 | 5.4 | TTTTGATAATAAATATCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2850 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_1054 | -93 | 5.2 | GTTTGATAATAAATATCATTT |
| Shewanella sp ANA-3 | Shewana3_1014 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-4 | Shewmr4_1010 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella sp MR-7 | Shewmr7_1075 | -181 | 5.6 | TGTTGATAATAAATATCATTT |
| Shewanella baltica OS155 | Sbal_3255 | -45 | 5.4 | ATTTGATAATCGATCTCATTT |
| Shewanella denitrificans OS217 | Sden_2152 | -58 | 5.8 | TATTGAGATTCATTATCATTT |
| Shewanella amazonensis SB2B | Sama_2808 | -73 | 4.8 | TGGTGAGAATTACTCTCAATT |
| Shewanella piezotolerans WP3 | swp_3069 | -102 | 4.3 | TGATCATAATTGTTTTAAATC |
|
Position: -177
Score: 5.7 Sequence: AAATGATATTGTTTATCATTT
Locus tag: Shewmr7_1219
|
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| Shewmr7_1219 | -177 | 5.7 | AAATGATATTGTTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3406 | ||||
| Ortholog function: Conserved hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3406 | -273 | 5.7 | AAATGATATTGTTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_1148 | -177 | 5.7 | AAATGATATTGTTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_1219 | -177 | 5.7 | AAATGATATTGTTTATCATTT |
| Shewanella baltica OS155 | Sbal_1237 | -195 | 5.5 | AAATGATATCGTTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3307 | -96 | 5.7 | AAATAAAAACCGTTCTCATTA |
|
Position: -59
Score: 5 Sequence: TTATGATAATGACTATTATTT
Locus tag: Shewmr7_1248
|
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| Shewmr7_1248 | -59 | 5 | TTATGATAATGACTATTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_2703 | ||||
| Ortholog function: Cytochrome B561 | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2703 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1308 | -60 | 4.6 | TTATGATAATGGATATTGTTT |
| Shewanella sp ANA-3 | Shewana3_1178 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-4 | Shewmr4_1177 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella sp MR-7 | Shewmr7_1248 | -59 | 5 | TTATGATAATGACTATTATTT |
| Shewanella baltica OS155 | Sbal_3042 | -61 | 5.3 | TTATGATAATGAATATTATTT |
| Shewanella amazonensis SB2B | Sama_0949 | -38 | 5.4 | AGATGAAAACCATTCTCGTTA |
|
Position: -44
Score: 6.1 Sequence: AAATGATAATGATTATCACTT
Locus tag: Shewmr7_1272
|
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| Shewmr7_1272 | -44 | 6.1 | AAATGATAATGATTATCACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3344 | ||||
| Ortholog function: Hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO3344 | -44 | 6 | AAATGATAATGATTATCAGTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2679 | -40 | 6 | AGATGATAATGATTATCAATT |
| Shewanella sp W3-18-1 | Sputw3181_1332 | -40 | 6 | AGATGATAATGATTATCAATT |
| Shewanella sp ANA-3 | Shewana3_1202 | -44 | 6.1 | AAATGATAATGATTATCACTT |
| Shewanella sp MR-4 | Shewmr4_1201 | -44 | 6.1 | AAATGATAATGATTATCACTT |
| Shewanella sp MR-7 | Shewmr7_1272 | -44 | 6.1 | AAATGATAATGATTATCACTT |
| Shewanella baltica OS155 | Sbal_3017 | -41 | 6 | AGATGATAATGATTATCAATT |
| Shewanella loihica PV-4 | Shew_1146 | -43 | 6.3 | AAATGATAATGATTATCAATT |
| Shewanella pealeana ATCC 700345 | Spea_1134 | -33 | 6.1 | TAATGATAATGATTATCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1179 | -44 | 6.1 | AATTGATAATGATTATCAATT |
| Shewanella piezotolerans WP3 | swp_3598 | -43 | 6.1 | TAATGATAATGATTATCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1239 | -41 | 5.7 | TAATGATAATGATTATCAATC |
| Shewanella woodyi ATCC 51908 | Swoo_1339 | -42 | 6 | AAATGATAATGATTATCAGTT |
|
Position: -66
Score: 5.8 Sequence: AGTTGAGAATTATTCTCATCT
Locus tag: Shewmr7_1497
|
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| Shewmr7_1497 | -66 | 5.8 | AGTTGAGAATTATTCTCATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3062 | ||||
| Ortholog function: Hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO3062 | -67 | 5.5 | TGTTGAGAACAATTCTCATCT |
| Shewanella putrefaciens CN-32 | Sputcn32_2436 | -55 | 5.5 | AATTGAGAACCATTCTCAACA |
| Shewanella sp ANA-3 | Shewana3_1485 | -67 | 5.8 | AGTTGAGAATAATTCTCATCT |
| Shewanella sp MR-4 | Shewmr4_1432 | -66 | 6 | AATTGAGAATGATTCTCATCT |
| Shewanella sp MR-7 | Shewmr7_1497 | -66 | 5.8 | AGTTGAGAATTATTCTCATCT |
| Shewanella baltica OS155 | Sbal_2737 | -50 | 5.2 | AATTGCGAATAGTTCTCAACA |
|
Position: -223
Score: 5.9 Sequence: AAATGAGAATGGTTTGCATTT
Locus tag: Shewmr7_1520
|
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| Shewmr7_1520 | -223 | 5.9 | AAATGAGAATGGTTTGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: pubA | ||||
| Ortholog function: Putrescine monooxygenase, PubA | ||||
| Shewanella oneidensis MR-1 | SO3030 | -208 | 5.7 | AGATGAGAACGATTTGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2411 | -219 | 6 | AAATGATAACGATTTGCATTT |
| Shewanella sp W3-18-1 | Sputw3181_1597 | -219 | 6 | AAATGATAACGATTTGCATTT |
| Shewanella sp ANA-3 | Shewana3_1510 | -224 | 6.1 | AAATGAGAATGATTTGCATTT |
| Shewanella sp MR-4 | Shewmr4_1454 | -222 | 5.9 | AAATGAGAATGGTTTGCATTT |
| Shewanella sp MR-7 | Shewmr7_1520 | -223 | 5.9 | AAATGAGAATGGTTTGCATTT |
| Shewanella baltica OS155 | Sbal_2708 | -232 | 6.1 | AAATGAGAATGATTTGCATTT |
|
Position: -44
Score: 5.6 Sequence: AAATGCGAATAATTAGCAATT
Locus tag: Shewmr7_1862
|
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| Shewmr7_1862 | -44 | 5.6 | AAATGCGAATAATTAGCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2039 | ||||
| Ortholog function: Signalling protein with EAL domain | ||||
| Shewanella oneidensis MR-1 | SO2039 | -44 | 5.6 | AAATGCGAATAATTAGCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_2106 | -48 | 4.9 | AAATGCAAATAATAAGCAATT |
| Shewanella sp W3-18-1 | Sputw3181_1906 | -48 | 4.9 | AAATGCAAATAATAAGCAATT |
| Shewanella sp ANA-3 | Shewana3_2237 | -44 | 5 | AAATGCGAATAATTAGCGATT |
| Shewanella sp MR-4 | Shewmr4_2112 | -42 | 5 | AAATGCGAATAATTAGCGATT |
| Shewanella sp MR-7 | Shewmr7_1862 | -44 | 5.6 | AAATGCGAATAATTAGCAATT |
| Shewanella baltica OS155 | Sbal_2274 | -46 | 5.3 | AAATGCGAATAATTAGTATTA |
| Shewanella baltica OS155 | Sbal_4560 | -46 | 5.3 | AAATGCGAATAATTAGTATTA |
| Shewanella denitrificans OS217 | Sden_1592 | -44 | 5.2 | AAATAGGAATAATTAGCATTA |
| Shewanella amazonensis SB2B | Sama_1896 | -42 | 5.5 | TAATGAGATTTATTTGCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1861 | -35 | 5.2 | TAATATAAACAATTATCATTT |
| Shewanella piezotolerans WP3 | swp_2763 | 29 | 5.6 | TAATGTTAATAATTATCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_1968 | -56 | 5 | TAATGTGAATAATTACTATTT |
|
Position: -65
Score: 5.5 Sequence: TATTGATAACAATTCGCATTA
Locus tag: Shewmr7_1899
|
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| Shewmr7_1899 | -65 | 5.5 | TATTGATAACAATTCGCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: COG3182 | ||||
| Ortholog function: PepSY-associated TM helix domain-containing protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1842 | -90 | 5.7 | AATTGAAAACAATTATCAATA |
| -64 | 5.2 | TATTGATAACAATTCGTATTA | ||
| Shewanella sp W3-18-1 | Sputw3181_2167 | -90 | 5.7 | AATTGAAAACAATTATCAATA |
| -64 | 5.2 | TATTGATAACAATTCGTATTA | ||
| Shewanella sp ANA-3 | Shewana3_2196 | -66 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella sp MR-4 | Shewmr4_2076 | -65 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella sp MR-7 | Shewmr7_1899 | -65 | 5.5 | TATTGATAACAATTCGCATTA |
| Shewanella baltica OS155 | Sbal_2134 | -64 | 5.4 | TATTGATAACAATTTGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2548 | -184 | 5.6 | TATTGCTAATGATTATCATTA |
| -107 | 5.5 | AATTGATAATAATTATCACTC | ||
| -80 | 5 | TATTGAGATTCGTTATCAATC | ||
|
Position: -59
Score: 5.7 Sequence: TGTTGATAACTATTCTCATTT
Locus tag: Shewmr7_1972
|
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| Shewmr7_1972 | -59 | 5.7 | TGTTGATAACTATTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sfri_2008 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1997 | -63 | 5.9 | TGTTGATAATAATTATCATTT |
| Shewanella sp MR-4 | Shewmr4_2003 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella sp MR-7 | Shewmr7_1972 | -59 | 5.7 | TGTTGATAACTATTCTCATTT |
| Shewanella baltica OS155 | Sbal_4484 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella baltica OS155 | Sbal_2198 | -165 | 4.7 | AAATAAAAATAATGATCACAT |
| -63 | 5.6 | TGTTGATAACAGTTATCATTT | ||
| Shewanella denitrificans OS217 | Sden_1854 | -36 | 6 | AAATAAAAACCATTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2008 | -116 | 6 | AATTGATAACTATTCTCATTA |
| Shewanella amazonensis SB2B | Sama_1788 | -52 | 6 | ATATGATAACTATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2212 | -117 | 6.1 | TATTGATAATCATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2195 | -62 | 5.9 | TGTTGATAATCATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2208 | -64 | 5.8 | CATTGATAATCATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2428 | -62 | 5.9 | AGTTGATAACCATTCTCATTT |
|
Position: -32
Score: 5.6 Sequence: AAATGATATTGATTCTCGTTT
Locus tag: Shewmr7_2074
|
||||
| Shewmr7_2074 | -32 | 5.6 | AAATGATATTGATTCTCGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2426 | ||||
| Ortholog function: Two component transcriptional regulator, Winged helix family | ||||
| Shewanella oneidensis MR-1 | SO2426 | -2 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1941 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_2064 | -2 | 5.5 | AAATGATATCGATTCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1959 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1904 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_2074 | -32 | 5.6 | AAATGATATTGATTCTCGTTT |
| Shewanella baltica OS155 | Sbal_2050 | -32 | 5.1 | AAATGATATAGATTCTCGTTT |
| Shewanella denitrificans OS217 | Sden_1906 | 10 | 5.6 | TAATGAAAATGGTTATCGTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2150 | -32 | 5.6 | TAATGGTAATCGTTATCATTA |
| Shewanella amazonensis SB2B | Sama_1718 | -32 | 4.8 | GAATAACAACCGTTCGCATTT |
| Shewanella loihica PV-4 | Shew_1936 | -31 | 6 | TAATGATAACTATTATCATTA |
| Shewanella pealeana ATCC 700345 | Spea_2236 | -34 | 5.3 | TAATGCGAATTATTCGTATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2220 | -34 | 5.6 | AAATGAAAATGATTCGCATTG |
| Shewanella piezotolerans WP3 | swp_2595 | -9 | 5.5 | CAATGATAATTGTTCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_2316 | -34 | 5.5 | AAATGATAACAGTTCGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_2294 | -36 | 5.4 | TGTTGATAATTGTTCGCATTT |
|
Position: -47
Score: 5.2 Sequence: ATTTAAGAATAATTATCATTC
Locus tag: Shewmr7_2171
|
||||
| Shewmr7_2171 | -47 | 5.2 | ATTTAAGAATAATTATCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_1826 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1826 | -48 | 5.1 | CATTAAGAATAATTATCATTC |
| Shewanella sp W3-18-1 | Sputw3181_2183 | -48 | 5.1 | CATTAAGAATAATTATCATTC |
| Shewanella sp ANA-3 | Shewana3_1861 | -47 | 5.2 | ATTTAAGAATAATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_1806 | -47 | 5.2 | ATTTAAGAATAATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2171 | -47 | 5.2 | ATTTAAGAATAATTATCATTC |
| Shewanella baltica OS155 | Sbal_2423 | -47 | 5.2 | ATTTAAGAATAATTATCATTC |
|
Position: -98
Score: 5.5 Sequence: AAATGAGAATTATTGTCACCT
Locus tag: Shewmr7_2458
|
||||
| Shewmr7_2458 | -98 | 5.5 | AAATGAGAATTATTGTCACCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_1590 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1590 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp W3-18-1 | Sputw3181_2432 | -101 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp ANA-3 | Shewana3_2551 | -99 | 6 | AAATGAGAATTATTGTCATCT |
| Shewanella sp MR-4 | Shewmr4_2386 | -98 | 6.2 | AAATGAGAATTATTGTCATTT |
| Shewanella sp MR-7 | Shewmr7_2458 | -98 | 5.5 | AAATGAGAATTATTGTCACCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0391 | -75 | 5.7 | AAATGAGAATAGTTTCCATTA |
|
Position: -71
Score: 5.6 Sequence: GACTGATAATAATTTTCATTT
Locus tag: Shewmr7_2517
|
||||
| Shewmr7_2517 | -71 | 5.6 | GACTGATAATAATTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2841 | ||||
| Ortholog function: Hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2841 | -60 | 5.4 | GACTGATAATAGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1534 | -59 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_2565 | -59 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_2609 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_2447 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_2517 | -71 | 5.6 | GACTGATAATAATTTTCATTT |
| Shewanella baltica OS155 | Sbal_1657 | -63 | 5.4 | GACTGATAATAGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_1270 | -60 | 5.4 | GACTGAGAATGGTTTTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2627 | -104 | 5.5 | GAACGATAATGATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2698 | -103 | 5.8 | TAACGATAATGATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_3175 | -56 | 6.1 | AATTGATAACGATTTTCATTT |
|
Position: -121
Score: 5.4 Sequence: AATTGAAAACTATTATCGTTA
Locus tag: Shewmr7_2573
|
||||
| Shewmr7_2573 | -121 | 5.4 | AATTGAAAACTATTATCGTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -123 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp ANA-3 | Shewana3_2671 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-4 | Shewmr4_2505 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella sp MR-7 | Shewmr7_2573 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella baltica OS155 | Sbal_1594 | -121 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella denitrificans OS217 | Sden_2415 | -116 | 5.4 | AATTGAAAACTATTATCGTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_2617 | -111 | 5.1 | AACTGAAAACTATTCTCGTTA |
| Shewanella amazonensis SB2B | Sama_1214 | -119 | 5.6 | AATTGAAAATTATTATCGTTA |
| Shewanella loihica PV-4 | Shew_2518 | -192 | 5.8 | CAATGAAAATGGTTCTCATTT |
| -123 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -191 | 5.1 | AAATAGTAACCATTCTTAATT |
| -126 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -126 | 5.7 | AATTGAAAATTATTATCGTTT |
| Shewanella piezotolerans WP3 | swp_3271 | -225 | 5.3 | AAATAATAACCATTACTATTT |
| -125 | 5.7 | AATTGAAAATTATTATCGTTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -219 | 4.9 | GAGCGATAATCATTCTCATCT |
| -126 | 5.6 | AATTGAAAACTATTCTCGTTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -218 | 4.8 | TAGTGATAATCGTTCTCACAA |
| -125 | 5.6 | AATTGAAAACTATTATCGTTT | ||
|
Position: -326
Score: 5.4 Sequence: TAACGATAATAGTTTTCAATT
Locus tag: Shewmr7_2574
|
||||
| Shewmr7_2574 | -326 | 5.4 | TAACGATAATAGTTTTCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mtrD | ||||
| Ortholog function: Periplasmic decaheme cytochrome c, MtrD | ||||
| Shewanella oneidensis MR-1 | SO1782 | -370 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp ANA-3 | Shewana3_2672 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp MR-4 | Shewmr4_2506 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella sp MR-7 | Shewmr7_2574 | -326 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella baltica OS155 | Sbal_1593 | -335 | 5.4 | TAACGATAATAGTTTTCAATT |
| Shewanella amazonensis SB2B | Sama_1213 | -297 | 5.6 | TAACGATAATAATTTTCAATT |
| -150 | 4.7 | AAATCAGACTAATTATTAATA | ||
| Shewanella loihica PV-4 | Shew_2519 | -291 | 5.7 | AAACGATAATAATTTTCAATT |
| -222 | 5.8 | AAATGAGAACCATTTTCATTG | ||
| Shewanella pealeana ATCC 700345 | Spea_2692 | -317 | 5.7 | AAACGATAATAATTTTCAATT |
| -252 | 5.1 | AATTAAGAATGGTTACTATTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2778 | -336 | 5.7 | AAACGATAATAATTTTCAATT |
| Shewanella piezotolerans WP3 | swp_3272 | -339 | 5.7 | AAACGATAATAATTTTCAATT |
| -239 | 5.3 | AAATAGTAATGGTTATTATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1530 | -322 | 5.6 | AAACGAGAATAGTTTTCAATT |
| -229 | 4.9 | AGATGAGAATGATTATCGCTC | ||
| -110 | 4.8 | AGATAAAAATGTTACTCATTT | ||
|
Position: -64
Score: 5.7 Sequence: TAATGAGATTTATTCTTATTT
Locus tag: Shewmr7_2577
|
||||
| Shewmr7_2577 | -64 | 5.7 | TAATGAGATTTATTCTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omcA | ||||
| Ortholog function: Surface localized decaheme cytochrome c lipoprotein, OmcA | ||||
| Shewanella sp ANA-3 | Shewana3_2675 | -64 | 5.3 | TAATGAGATTTATTCTTATTC |
| Shewanella sp MR-4 | Shewmr4_2509 | -64 | 5.7 | TAATGAGATTTATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_2577 | -64 | 5.7 | TAATGAGATTTATTCTTATTT |
| Shewanella baltica OS155 | Sbal_1590 | -64 | 5.5 | TAATGAGATTTATTCTTATCT |
| Shewanella amazonensis SB2B | Sama_1210 | -297 | 5.6 | TAACGATAATAATTTTCAATT |
| -150 | 4.7 | AAATCAGACTAATTATTAATA | ||
|
Position: -31
Score: 4.9 Sequence: GATTGAAAATGATTTTCACTG
Locus tag: Shewmr7_2608
|
||||
| Shewmr7_2608 | -31 | 4.9 | GATTGAAAATGATTTTCACTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1755 | ||||
| Ortholog function: Phosphomannomutase (EC 5.4.2.8) clustering with Aga operon | ||||
| Shewanella oneidensis MR-1 | SO1755 | -30 | 5.3 | AATTGAAAATGATTTTCACTG |
| Shewanella putrefaciens CN-32 | Sputcn32_1454 | -30 | 4.8 | GATTGCAAATGATTTTCAATG |
| Shewanella sp W3-18-1 | Sputw3181_2648 | -30 | 4.8 | GATTGCAAATGATTTTCAATG |
| Shewanella sp ANA-3 | Shewana3_2707 | -30 | 4.9 | GATTGAAAATGATTTTCACTG |
| Shewanella sp MR-4 | Shewmr4_2541 | -30 | 4.9 | GATTGAAAATGATTTTCACTG |
| Shewanella sp MR-7 | Shewmr7_2608 | -31 | 4.9 | GATTGAAAATGATTTTCACTG |
| Shewanella baltica OS155 | Sbal_1561 | -30 | 4.8 | GATTGCAAATGATTTTCAATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2159 | -30 | 5.4 | TATTGAAAATGATTATCAATG |
| Shewanella sediminis HAW-EB3 | Ssed_1517 | -67 | 5.3 | AAATGAAAATCATTTGTAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_3151 | -66 | 5.2 | CAATGCTAATGATTTTCAACT |
|
Position: -48
Score: 5.8 Sequence: AGATGAAAATCATTATCATTC
Locus tag: Shewmr7_2846
|
||||
| Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1482 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO1482 | -49 | 5 | GGATGGAAATCATTATCATTC |
| Shewanella putrefaciens CN-32 | Sputcn32_1237 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp W3-18-1 | Sputw3181_2867 | -49 | 4.7 | AAATACAAATCATTACTATTC |
| Shewanella sp ANA-3 | Shewana3_2944 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-4 | Shewmr4_2768 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella sp MR-7 | Shewmr7_2846 | -48 | 5.8 | AGATGAAAATCATTATCATTC |
| Shewanella baltica OS155 | Sbal_1315 | -49 | 5 | AAATGCAAATCATTACTATTC |
| Shewanella denitrificans OS217 | Sden_1445 | -48 | 5.2 | CTATGATAATCATTATCATTC |
| Shewanella frigidimarina NCIMB 400 | Sfri_2440 | -52 | 5.6 | TTATGATAATCATTATCATTC |
| Shewanella loihica PV-4 | Shew_2690 | -51 | 6 | TATTGATAATCGTTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_2930 | -51 | 6 | TAATGATAATCGTTATCATCT |
| Shewanella halifaxensis HAW-EB4 | Shal_3021 | -51 | 5.6 | TAATAAGAATCGTTATCATCT |
| Shewanella piezotolerans WP3 | swp_3568 | -51 | 5.8 | TAATGATAATGGTTATCATCA |
| Shewanella sediminis HAW-EB3 | Ssed_3242 | -49 | 5.5 | AAATGCAAATCGTTATCATTC |
| Shewanella woodyi ATCC 51908 | Swoo_3375 | -51 | 6 | TAATGATAATCGTTATCATCT |
|
Position: -62
Score: 5 Sequence: TAACGAGAATAATTCTTGTTT
Locus tag: Shewmr7_3399
|
||||
| Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_0590 | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0630 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella sp MR-7 | Shewmr7_3399 | -62 | 5 | TAACGAGAATAATTCTTGTTT |
| Shewanella amazonensis SB2B | Sama_0590 | -2 | 5.9 | AAATGATAACTATTGTCATTA |
| Shewanella pealeana ATCC 700345 | Spea_0713 | -66 | 5.5 | AAATGATAATCAATCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0766 | -67 | 5.6 | AAATGAGAATGAATAGCATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3888 | -84 | 5.5 | AAATGATAACCACTCTCATTA |
| Shewanella woodyi ATCC 51908 | Swoo_3787 | -2 | 5.5 | AAATGATAATCAATCCCATTA |
|
Position: -54
Score: 5.3 Sequence: ATTTGATAAGCGTTTTCATTT
Locus tag: Shewmr7_3448
|
||||
| Shewmr7_3448 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: bfd | ||||
| Ortholog function: Bacterioferritin-associated ferredoxin | ||||
| Shewanella oneidensis MR-1 | SO0583 | -55 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3295 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0646 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp ANA-3 | Shewana3_0581 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-4 | Shewmr4_0582 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella sp MR-7 | Shewmr7_3448 | -54 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella baltica OS155 | Sbal_0542 | -53 | 5.3 | ATTTGATAAGCGTTTTCATTT |
| Shewanella denitrificans OS217 | Sden_3217 | -99 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3324 | -76 | 5.7 | CAATGATAACCGTTTTCATTT |
| Shewanella amazonensis SB2B | Sama_3040 | -59 | 5.5 | TGATGAGAACGGTTTTTATTT |
| Shewanella pealeana ATCC 700345 | Spea_3555 | -58 | 5.8 | CATTGAGAATCATTTTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3649 | -58 | 5.5 | CACTGAGAATCATTTTCATTT |
| Shewanella piezotolerans WP3 | swp_0771 | -86 | 5.3 | GATTGATAACTATTCTCATCA |
| -57 | 5.6 | CATTGAGAATCGTTTTCATTT | ||
|
Position: -145
Score: 5.7 Sequence: AAATGATAATTATTTACATTA
Locus tag: Shewmr7_3500
|
||||
| Shewmr7_3500 | -145 | 5.7 | AAATGATAATTATTTACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shewmr4_0531 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella sp MR-4 | Shewmr4_0531 | -145 | 5.7 | AAATGATAATTATTTACATTA |
| Shewanella sp MR-7 | Shewmr7_3500 | -145 | 5.7 | AAATGATAATTATTTACATTA |
|
Position: -155
Score: 4.8 Sequence: TATTGCGAACTATTCTCACCA
Locus tag: Shewmr7_3580
|
||||
| Shewmr7_3580 | -155 | 4.8 | TATTGCGAACTATTCTCACCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0447 | ||||
| Ortholog function: Iron-regulated inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO0447 | -146 | 5.2 | TATTGCGAACTATTCTCATCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3397 | -184 | 5.2 | TATTGCGAATTGTTATCAATA |
| Shewanella sp W3-18-1 | Sputw3181_0546 | -182 | 5.2 | TATTGCGAATTGTTATCAATA |
| Shewanella sp ANA-3 | Shewana3_0445 | -152 | 5.1 | TATTGCGAACTGTTCTCATCA |
| Shewanella sp MR-4 | Shewmr4_0449 | -153 | 4.8 | TATTGCGAACTATTCTCACCA |
| Shewanella sp MR-7 | Shewmr7_3580 | -155 | 4.8 | TATTGCGAACTATTCTCACCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3224 | -102 | 5 | GATTGATAATCGTTGTTATTA |
|
Position: -192
Score: 5.1 Sequence: AATTAAGAACGATTCTCGATT
Locus tag: Shewmr7_3720
|
||||
| Shewmr7_3720 | -192 | 5.1 | AATTAAGAACGATTCTCGATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Shewmr4_0304 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella sp ANA-3 | Shewana3_0299 | -194 | 5.6 | AATTAATAACAATTCTCAATT |
| Shewanella sp MR-4 | Shewmr4_0304 | -193 | 5.1 | AATTAAGAACGATTCTCGATT |
| Shewanella sp MR-7 | Shewmr7_3720 | -192 | 5.1 | AATTAAGAACGATTCTCGATT |
|
Position: -98
Score: 5.5 Sequence: CAATAAAAATCGTTATCATTT
Locus tag: Shewmr7_3733
|
||||
| Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4423.1 | ||||
| Ortholog function: TonB-dependent ferric achromobactin receptor | ||||
| Shewanella oneidensis MR-1 | SO4423.1 | -98 | 5.4 | TAATAAAAATCGTTACCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0401 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp W3-18-1 | Sputw3181_0255 | -97 | 5.6 | TAACGAAAATCGTTATCATTT |
| Shewanella sp ANA-3 | Shewana3_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-4 | Shewmr4_0286 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3733 | -98 | 5.5 | CAATAAAAATCGTTATCATTT |
| Shewanella baltica OS155 | Sbal_0298 | -100 | 5.6 | GAATAAAAATCGTTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0392 | -54 | 5.9 | TAATGATAATGAATATCATTA |
| Shewanella amazonensis SB2B | Sama_1394 | -54 | 5 | CATTGAGAGTAATTATCATTA |
| Shewanella loihica PV-4 | Shew_1688 | -72 | 4.9 | ATATGATAATCTATATCATTC |
| Shewanella pealeana ATCC 700345 | Spea_0977 | -108 | 5.3 | AAACACTAATCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_1134 | -108 | 5.2 | CAACAATAATCATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1496 | -51 | 4.9 | AATCGAGAATGGTTATCATCC |
| Shewanella woodyi ATCC 51908 | Swoo_0587 | -62 | 5.9 | TAATGGGAATAATTATCATTT |
|
Position: -99
Score: 6 Sequence: AAATGATATTGGTTATCATTT
Locus tag: Shewmr7_3798
|
||||
| Shewmr7_3798 | -99 | 6 | AAATGATATTGGTTATCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: viuA | ||||
| Ortholog function: TonB-dependent receptor | ||||
| Shewanella oneidensis MR-1 | SO4516 | -100 | 5.8 | AAATGATATTGGTTATCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_0330 | -101 | 5.6 | AAATGATAATCCTTCTCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_3878 | -101 | 5.6 | AAATGATAATCCTTCTCAGTT |
| Shewanella sp ANA-3 | Shewana3_3923 | -99 | 5.8 | AAATGATATTGGTTATCATCT |
| Shewanella sp MR-4 | Shewmr4_3727 | -99 | 6 | AAATGATATTGGTTATCATTT |
| Shewanella sp MR-7 | Shewmr7_3798 | -99 | 6 | AAATGATATTGGTTATCATTT |
| Shewanella denitrificans OS217 | Sden_0621 | -92 | 5.2 | AAATGAGAGTGATTTGCAATT |
| Shewanella piezotolerans WP3 | swp_0161 | -104 | 5.3 | AAATGTGAATGATTCGCAATT |
|
Position: -27
Score: 5.3 Sequence: AAATCAAATCCATTCTCATTA
Locus tag: Shewmr7_3936
|
||||
| Shewmr7_3936 | -27 | 5.3 | AAATCAAATCCATTCTCATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4700 | ||||
| Ortholog function: Hypothetical outer membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4700 | -86 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp ANA-3 | Shewana3_4052 | -86 | 4.8 | AAATCGAATCCATTCTCATTA |
| Shewanella sp MR-4 | Shewmr4_3843 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella sp MR-7 | Shewmr7_3936 | -27 | 5.3 | AAATCAAATCCATTCTCATTA |
| Shewanella baltica OS155 | Sbal_0123 | -86 | 4.5 | AAATCGAATCAATTCGCATTA |
| Shewanella denitrificans OS217 | Sden_3594 | -123 | 4.7 | AAATAAGACTGGTTTGTATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3875 | -80 | 5.3 | AAACGAGACTGATTATCATTT |
| Shewanella loihica PV-4 | Shew_3658 | -83 | 5.3 | AAATGCAACCAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4066 | 7 | 5 | AAATACGAGCTATTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0192 | -87 | 4.4 | AAATACGTCCCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_4927 | -86 | 5 | AAATACAACCGATTATCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0144 | -97 | 5.5 | AAATGGGAAGTGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0123 | -85 | 5.2 | AAATACAAAGCGTTATCATTT |
|
Position: -60
Score: 6 Sequence: TAATGAGAATTGTTATCATCT
Locus tag: Shewmr7_4011
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| Shewmr7_4011 | -60 | 6 | TAATGAGAATTGTTATCATCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4740 | ||||
| Ortholog function: Conserved hypothetical inner membrane protein | ||||
| Shewanella oneidensis MR-1 | SO4740 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella putrefaciens CN-32 | Sputcn32_3921 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp W3-18-1 | Sputw3181_4047 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp ANA-3 | Shewana3_4124 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-4 | Shewmr4_3919 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella sp MR-7 | Shewmr7_4011 | -60 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella baltica OS155 | Sbal_4341 | -59 | 6 | TAATGAGAATTGTTATCATCT |
| Shewanella denitrificans OS217 | Sden_3706 | -50 | 6 | TATTGATAACGATTATCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4031 | -46 | 6 | TAATGAGAACTGTTATCATTT |
| Shewanella amazonensis SB2B | Sama_3636 | -50 | 5.9 | AAGTGATAACTATTATCATTT |
| Shewanella loihica PV-4 | Shew_3815 | -46 | 6.5 | AAATGATAATAATTATCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4226 | -47 | 5.9 | AAATGAGAAGCGTTATCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4274 | -47 | 6.3 | AAATGATAACCATTATCATTT |
| Shewanella piezotolerans WP3 | swp_5137 | -46 | 6.1 | AAATGATAATCGTTATCATCT |
| Shewanella sediminis HAW-EB3 | Ssed_4479 | -47 | 6.1 | AGATGAGAATAGTTATCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4887 | -50 | 6.3 | AAATGAGAACCATTATCATTT |
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Position: -68
Score: 5.7 Sequence: AAATAAAAACAATTCTTATTT
Locus tag: Shewmr7_4014
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| Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4743 | ||||
| Ortholog function: TonB-dependent siderophore receptor | ||||
| Shewanella oneidensis MR-1 | SO4743 | -116 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3953 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp W3-18-1 | Sputw3181_4050 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella sp ANA-3 | Shewana3_4127 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-4 | Shewmr4_3922 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella sp MR-7 | Shewmr7_4014 | -68 | 5.7 | AAATAAAAACAATTCTTATTT |
| Shewanella baltica OS155 | Sbal_4363 | -68 | 5.6 | AAATAAAAACACTTCTCATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_4042 | -68 | 5.4 | AAATGGAAACGCTTCTCATTT |
| Shewanella amazonensis SB2B | Sama_3641 | -73 | 5.9 | AAATGCTAATCATTATCAATT |
| Shewanella loihica PV-4 | Shew_3841 | -69 | 6 | AAATAAAAACAATTCTCATTT |
| Shewanella pealeana ATCC 700345 | Spea_4236 | -69 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4287 | -68 | 6 | AAATAAAAATAGTTCTCATTT |
| Shewanella piezotolerans WP3 | swp_5150 | -68 | 5.6 | GAATAAAAACAATTCTCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4483 | -66 | 6 | AAATAAAAACGATTCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4894 | -67 | 6.2 | AAATAAAAATAATTCTCATTT |