Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of TyrR regulog to Shewanella sp MR-7

Reference regulog properties
Source regulog: TyrR - Shewanellaceae
Regulator type: Transcription factor
Regulator family: TyrR
Regulation mode: activator
Biological process: Amino acid utilization
Effector: Tyrosine; Phenylalanine
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Shewanella sp MR-7
Orthologous TF(s) Shewmr7_2672
Regulated genes 21
Built upon 312 sites [see more]
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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

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© 2009-2020 RegPrecise
Predicted regulatory interactions in Shewanella sp MR-7
Locus tag Position Score Sequence
Position: -172
Score: 4.2
Sequence: ATGGTAATTTTTAGTTACAA
Locus tag: Shewmr7_0787
Shewmr7_0787 -172 4.2 ATGGTAATTTTTAGTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pep3
Ortholog function: peptidase, M13 family
Shewanella oneidensis MR-1 SO_3844 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella putrefaciens CN-32 Sputcn32_0791 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp W3-18-1 Sputw3181_3384 -276 3.6 ATGTTAAGTTTATTTGCCTT
Shewanella sp ANA-3 Shewana3_0759 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-4 Shewmr4_3179 -173 4.2 ATGGTAATTTTTAGTTACAA
Shewanella sp MR-7 Shewmr7_0787 -172 4.2 ATGGTAATTTTTAGTTACAA
Shewanella baltica OS155 Sbal_0685 -173 4 CTGGTAACCTTTAGTTACAT
Shewanella denitrificans OS217 Sden_1089 -224 3.8 TTGGTTACATAAATTGCCAG
Shewanella loihica PV-4 Shew_2973 -180 4.1 GAGGAAATCTTTACTTACAT
Shewanella pealeana ATCC 700345 Spea_3177 -237 3.8 TGGGAAACCTTTTCTTACAC
Shewanella halifaxensis HAW-EB4 Shal_3258 -202 3.9 TAGGAAACCTTTTCTTACAC
Shewanella piezotolerans WP3 swp_3866 -189 3.9 TAGGAAACCTTTTCTTACAC
Shewanella sediminis HAW-EB3 Ssed_3509 -218 4 AAGGAAACCTTTACTTACAC
Shewanella woodyi ATCC 51908 Swoo_0911 -178 3.7 AAGGAAACCTTTTCTTACAT
Position: -197
Score: 4.6
Sequence: TTGTCAATTGAGCGTTACAT
Locus tag: Shewmr7_0850
Shewmr7_0850 -197 4.6 TTGTCAATTGAGCGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putA
Ortholog function: Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewanella oneidensis MR-1 SO_3774 -212 4.8 TTGTCAATCAAGCGTTACAT
Shewanella putrefaciens CN-32 Sputcn32_3099 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp W3-18-1 Sputw3181_0845 -194 4.8 TTGTCAATTAAGCGTTACAT
Shewanella sp ANA-3 Shewana3_0819 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-4 Shewmr4_3122 -198 4.6 TTGTCAATTGAGCGTTACAT
Shewanella sp MR-7 Shewmr7_0850 -197 4.6 TTGTCAATTGAGCGTTACAT
Shewanella baltica OS155 Sbal_3458 -194 4.8 TTGTCAATCAAGCGTTACAT
Shewanella amazonensis SB2B Sama_2676 -219 4 TTGTCAAGTGGGCGTTACGC
Shewanella sediminis HAW-EB3 Ssed_3846 -109 4 TTGTATACAAAAAATAACAA
Position: -122
Score: 3.8
Sequence: GTGGCAACTTTCGCTGCCAC
Locus tag: Shewmr7_0986
Shewmr7_0986 -122 3.8 GTGGCAACTTTCGCTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepD
Ortholog function: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Shewanella putrefaciens CN-32 Sputcn32_0954 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella sp W3-18-1 Sputw3181_3222 -108 3.9 CTGGCAACTTTGGCTGCCAG
Shewanella baltica OS155 Sbal_0940 -123 4 CTGGAAACTTTGGCTGCCAG
Shewanella amazonensis SB2B Sama_2519 -123 4.4 CTGGAAACTTTGGCTTCCAC
Shewanella loihica PV-4 Shew_2852 -123 4.6 GTGGCAACTTAGTATGACAC
Shewanella pealeana ATCC 700345 Spea_3091 -141 4.5 GTGGAAACTTTGGCTGACAA
Shewanella halifaxensis HAW-EB4 Shal_3175 -160 4.6 GTGGAAACTTTGCCTGACAA
Shewanella piezotolerans WP3 swp_1180 -140 4 ATGGCAACTTCTGCTGACAC
Shewanella woodyi ATCC 51908 Swoo_3603 -180 3.8 TTGGCAACTTTCAATGACAG
Position: -116
Score: 3.8
Sequence: GTGGCAGCGAAAGTTGCCAC
Locus tag: Shewmr7_0987
Shewmr7_0987 -116 3.8 GTGGCAGCGAAAGTTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: SO1117
Ortholog function: peptidase M17, leucyl aminopeptidase
Shewanella putrefaciens CN-32 Sputcn32_0955 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella sp W3-18-1 Sputw3181_3221 -116 3.9 CTGGCAGCCAAAGTTGCCAG
Shewanella baltica OS155 Sbal_0941 -116 4 CTGGCAGCCAAAGTTTCCAG
Shewanella amazonensis SB2B Sama_2518 -45 4.4 GTGGAAGCCAAAGTTTCCAG
Shewanella loihica PV-4 Shew_2851 -320 4.6 GTGTCATACTAAGTTGCCAC
Shewanella pealeana ATCC 700345 Spea_3090 -111 4.5 TTGTCAGCCAAAGTTTCCAC
Shewanella piezotolerans WP3 swp_1181 -106 4 GTGTCAGCAGAAGTTGCCAT
Shewanella woodyi ATCC 51908 Swoo_3602 -151 3.8 CTGTCATTGAAAGTTGCCAA
Position: -13
Score: 4
Sequence: ATGGAAGAAAAACATGACAA
Locus tag: Shewmr7_1455
Shewmr7_1455 -13 4 ATGGAAGAAAAACATGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aprE
Ortholog function: Alkaline serine protease
Shewanella sp ANA-3 Shewana3_1443 -357 3.9 TTTGAAATTATTCATTCCAA
Shewanella sp MR-4 Shewmr4_1390 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella sp MR-7 Shewmr7_1455 -357 3.9 TTTGAAATTAATCATTCCAA
Shewanella denitrificans OS217 Sden_1409 -105 4.1 GCGTATATAAATGGTTACAT
Shewanella frigidimarina NCIMB 400 Sfri_2692 -333 4.7 CTGCAAAAATATCTTTACAC
Shewanella piezotolerans WP3 swp_3159 -171 4 ACGTAAAGAAATCTGTCCAC
Position: -154
Score: 5.2
Sequence: GTGGAAAGCTAGATTGCCAC
Locus tag: Shewmr7_1673
Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ldh
Ortholog function: Leucine dehydrogenase (EC 1.4.1.9)
Shewanella oneidensis MR-1 SO_2638 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella putrefaciens CN-32 Sputcn32_2238 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp W3-18-1 Sputw3181_1771 -155 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella sp ANA-3 Shewana3_1742 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-4 Shewmr4_1598 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella sp MR-7 Shewmr7_1673 -154 5.2 GTGGAAAGCTAGATTGCCAC
Shewanella baltica OS155 Sbal_2483 -134 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella denitrificans OS217 Sden_1823 -140 4.9 GTGGCAAGCAAAATTGCCAC
Shewanella frigidimarina NCIMB 400 Sfri_2265 -178 5.2 GTGGCAAGCTAAATTTCCAC
Shewanella amazonensis SB2B Sama_2067 -147 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella loihica PV-4 Shew_1555 -157 5.1 GTGGAAAGCAAAATTGCCAC
Shewanella pealeana ATCC 700345 Spea_2543 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella halifaxensis HAW-EB4 Shal_1711 -157 4.9 GTGGAAAGCAAAATTGCCAG
Shewanella piezotolerans WP3 swp_1857 -158 4.8 GTGGAAAGCAGAATTGCCAC
Shewanella sediminis HAW-EB3 Ssed_1877 -156 5.2 GTGGAAAGCTAAATTGCCAC
Shewanella woodyi ATCC 51908 Swoo_2710 -157 5.1 GTGGAAAGCAAAATTGCCAC
Position: -160
Score: 4.8
Sequence: TTGTAAAGCATTATATACAT
Locus tag: Shewmr7_1947
Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: bkdA1
Ortholog function: Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4)
Shewanella oneidensis MR-1 SO_2339 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella putrefaciens CN-32 Sputcn32_1885 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp W3-18-1 Sputw3181_2123 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella sp ANA-3 Shewana3_2131 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-4 Shewmr4_2028 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella sp MR-7 Shewmr7_1947 -160 4.8 TTGTAAAGCATTATATACAT
Shewanella baltica OS155 Sbal_4508 -160 4.9 TTGTAAAGCAATATATACAT
Shewanella denitrificans OS217 Sden_1786 -153 4.5 GCGTAAAGCAAATTATACAA
Shewanella frigidimarina NCIMB 400 Sfri_1935 -156 4.5 TCGTAAAGCAATATATACAT
Shewanella amazonensis SB2B Sama_1709 -150 4.3 CTGTAAAGCAATTAATACAT
Shewanella loihica PV-4 Shew_1925 -175 4.7 TTGTAAAGCTAGCGATACAT
Shewanella pealeana ATCC 700345 Spea_2246 -161 4.8 ATGTAAACCAATATATACAT
Shewanella halifaxensis HAW-EB4 Shal_2234 -161 4.8 ATGTAAACCAATATATACAT
Shewanella piezotolerans WP3 swp_2606 -162 4.8 ATGTAAACCAATATATACAT
Shewanella sediminis HAW-EB3 Ssed_2329 -172 4.4 TTGTAAAGCTAAAGATACGC
Shewanella woodyi ATCC 51908 Swoo_2278 -171 4 ATGTAAAGCTAAACATACGG
Position: -218
Score: 4
Sequence: GTGGCAATTAATTTTACCAG
Position: -152
Score: 4.6
Sequence: GTGTAAGCTAAATTTTACAG
Locus tag: Shewmr7_2040
Shewmr7_2040 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: emrD
Ortholog function: multidrug resistance protein D
Shewanella oneidensis MR-1 SO_2389 -152 4.5 ATGTAAGCTTAATTTTACAG
Shewanella putrefaciens CN-32 Sputcn32_2030 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp W3-18-1 Sputw3181_1983 -257 3.7 ATATCAAGTATTTTATCCAC
-114 4.6 GCGTAAGTTTAACTTTACAA
Shewanella sp ANA-3 Shewana3_1989 -152 4.6 GTGTAAGCTTAGTTTGACAA
Shewanella sp MR-4 Shewmr4_1936 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella sp MR-7 Shewmr7_2040 -218 4 GTGGCAATTAATTTTACCAG
-152 4.6 GTGTAAGCTAAATTTTACAG
Shewanella baltica OS155 Sbal_2085 -154 4.4 ACGTAAGTTTAGCTTTACAG
Shewanella sediminis HAW-EB3 Ssed_2287 -182 4 CTGTAACGCCATCAATACAA
-161 4 GTGTAAGCTTGCGTTTACAG
Shewanella woodyi ATCC 51908 Swoo_2329 -160 4.1 TCGTAAGTATAGATTTACGC
Position: -298
Score: 3.9
Sequence: CTGGCAAAAAAGCCTGCCAA
Position: -101
Score: 4.5
Sequence: TTGTAATCTTAACTTGACGC
Locus tag: Shewmr7_2056
Shewmr7_2056 -298 3.9 CTGGCAAAAAAGCCTGCCAA
-101 4.5 TTGTAATCTTAACTTGACGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Shewanella oneidensis MR-1 SO_2404 -101 3.8 TAGTAACGTAAACTTGACGT
-80 3.6 ATGTAGTGTGAAGTTGCCAT
Shewanella putrefaciens CN-32 Sputcn32_2044 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp W3-18-1 Sputw3181_1969 -298 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp ANA-3 Shewana3_1975 -300 3.9 CTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp MR-4 Shewmr4_1922 -300 3.9 CTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
Shewanella sp MR-7 Shewmr7_2056 -298 3.9 CTGGCAAAAAAGCCTGCCAA
-101 4.5 TTGTAATCTTAACTTGACGC
Shewanella baltica OS155 Sbal_2068 -299 4 TTGGCAAAAAAGCCTGCCAA
-102 4.5 TTGTAATCTTAACTTGACGC
-81 3.7 GTGTAGCGTGAAGTTGCCAT
Shewanella denitrificans OS217 Sden_1751 -131 4.5 TTGGAAAGATAAGCTGACAA
Shewanella frigidimarina NCIMB 400 Sfri_2125 -328 4.3 TTGGAAAGTTAACGTAACAA
-107 4.1 CTGTAATGAATTTGTTCCAC
Shewanella amazonensis SB2B Sama_1734 -266 3.8 ATGGCAACAAATCTTGCAAT
Shewanella loihica PV-4 Shew_1952 -268 4 TTGGCAAATTTTCATGCCAG
Shewanella pealeana ATCC 700345 Spea_2071 -290 4.2 CCGGAAATTTTTAGTTCCAC
Shewanella sediminis HAW-EB3 Ssed_2300 -334 3.8 ATGGCATGAAATTGTTCCAG
Shewanella woodyi ATCC 51908 Swoo_2309 -323 3.8 CTGGCATGTTTTTCTTCCAC
-89 3.9 TTGTGTATCAATATTTGCAA
Position: -155
Score: 3.9
Sequence: TTGGCAGGCTTTTTTGCCAG
Locus tag: Shewmr7_2057
Shewmr7_2057 -155 3.9 TTGGCAGGCTTTTTTGCCAG
Supported by regulated orthologs from reference regulons