Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus cereus subsp. cytotoxis NVH 391-98

Type Regulator Effector Pathway Genes Sites
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 6 12
TF BglZ Beta-glucoside Beta-glucosides utilization 2 2
TF BirA Biotin Biotin biosynthesis 2 2
TF BkdR Branched-chain amino acid degradation 1 1
TF CcpA HPr, phosphocarrier protein Carbon catabolism 20 23
TF CcpC Citrate Citrate metabolism 1 1
TF CcpN Gluconeogenesis 2 3
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 55 118
TF CtsR Heat shock Heat shock response 2 3
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 4 4
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 1 2
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 2 4
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 3 3
TF FapR Malonyl-CoA Fatty acid biosynthesis 5 6
TF Fnr Oxygen Anaerobic metabolism 2 3
TF Fur Iron ion, (Fe2+) Iron homeostasis 8 23
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 1
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 2 4
TF HrcA Heat shock Heat shock response 2 2
TF LexA DNA damage SOS response 9 9
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 1 1
TF LutR L-lactate Lactate utilization 1 1
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 1 4
TF MhqR 2-Methylhydroquinone and catechol resistance 3 3
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 3 3
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 1 1
TF NiaR Niacin NAD biosynthesis 3 3
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 10 13
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 7 9
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 3 3
TF SinR SinI, antirepressor protein Biofilm formation 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 20 35
TF YdfD/YisV Metabolite transport 1 1
TF YhcF Multidrug resistance; Multidrug efflux 1 1
TF YodB/CatR Diamide; Quinone Oxidative stress response 4 8
TF YtlI L-cystine transporter 1 7
TF YtrA Ramoplanin Ramoplanin resistance 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
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