Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of LexA regulog to Bacillus cereus subsp. cytotoxis NVH 391-98

Reference regulog properties
Source regulog: LexA - Bacillales
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus cereus subsp. cytotoxis NVH 391-98
Orthologous TF(s) Bcer98_2344
Regulated genes 9
Built upon 206 sites [see more]
Predicted regulatory interactions in Bacillus cereus subsp. cytotoxis NVH 391-98
Locus tag Position Score Sequence
Position: -40
Score: 4.5
Sequence: GCAAACTAACGTTCGT
Locus tag: Bcer98_0859
Bcer98_0859 -40 4.5 GCAAACTAACGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: addB
Ortholog function: ATP-dependent deoxyribonuclease (subunit B)
Bacillus pumilus SAFR-032 BPUM_0993 -115 4.2 TCGAAGAGAGGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2231 -174 4.3 GCGAACAAATGATCGA
34 4.3 TAAAACATATGCTTGA
Geobacillus kaustophilus HTA426 GK0681 -55 4.1 GCGAACATACGTGCTA
Bacillus cereus ATCC 14579 BC1137 -40 4.5 GCAAACTAACGTTCGT
Oceanobacillus iheyensis HTE831 OB1181 -166 4.7 CAGATCATATGTTCGT
Paenibacillus sp. JDR-2 Pjdr2_2219 -90 5.1 CAGAACATACGTTTGT
Position: -43
Score: 4.6
Sequence: AGAAACATATGTTCTG
Locus tag: Bcer98_2247
Bcer98_2247 -43 4.6 AGAAACATATGTTCTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: parE
Ortholog function: Topoisomerase IV subunit B (EC 5.99.1.-)
Bacillus subtilis subsp. subtilis str. 168 BSU18090 -220 4.9 ACAAACATACGTTCTC
Bacillus amyloliquefaciens FZB42 RBAM_017900 -243 4.3 GCGAACTCATGTTCTT
Bacillus pumilus SAFR-032 BPUM_1709 -246 4.8 TAGAACATTTGTTCTG
Anoxybacillus flavithermus WK1 Aflv_1444 -30 4.7 AGAAACAAATGTTCTT
Geobacillus kaustophilus HTA426 GK1751 -40 4.1 AGAAACAGGTGTTCTT
Bacillus cereus ATCC 14579 BC3597 -44 4.6 AGAAACATATGTTCTG
Bacillus halodurans C-125 BH2140 -72 4.9 CCGAACATGCGTTTGT
Bacillus clausii KSM-K16 ABC1989 -64 4.5 CAGAACAAACATTCGT
Oceanobacillus iheyensis HTE831 OB1693 -57 4.6 AAGAACAGTTGTTCTA
Paenibacillus sp. JDR-2 Pjdr2_2492 -172 4 GCGAATTTATGTTATT
Position: -75
Score: 5.2
Sequence: ACAAACATAAGTTCGA
Locus tag: Bcer98_2343
Bcer98_2343 -75 5.2 ACAAACATAAGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yneB
Ortholog function: Site-specific recombinase, DNA invertase
Bacillus subtilis subsp. subtilis str. 168 BSU17870 -428 5.1 ACAAACATAGGTTCGA
-399 4.4 AGAAACGTTTGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_017670 -426 5.1 ACAAACATAGGTTCGA
-396 4.4 AGAAACGTTTGTTCGT
-359 4.1 GCGAACAAACATTCTT
Bacillus pumilus SAFR-032 BPUM_1688 -431 5.1 ACAAACATAGGTTCGA
-401 4.4 AGAAACGTTTGTTCGT
-362 4 ACGAACACACATTCTA
Bacillus licheniformis DSM 13 BLi02034 -425 5.1 ACAAACATAGGTTCGA
-395 4.9 AGAAACATTTGTTCGT
-357 4 CCGAACAAACATTCTG
Anoxybacillus flavithermus WK1 Aflv_1504 -404 5.2 ACAAACATAAGTTCGA
-375 4.9 ACGAACAAAAGTTCTC
-347 5 ACAAACAAATGTTCTA
Geobacillus kaustophilus HTA426 GK1330 -419 5.1 ACAAACATAGGTTCGA
-390 4.6 ACAAACAAATGTTCCT
-357 4 GCGAACAAACATTCTA
Bacillus cereus ATCC 14579 BC3689 -75 5.2 ACAAACATAAGTTCGA
Bacillus halodurans C-125 BH2354 -317 4.6 GCAAACATAAGTTCTA
-288 4.8 ACAAACAAGTGTTCTT
Bacillus clausii KSM-K16 ABC2166 -443 4.4 ACGAACAGTTGTTCCT
-414 4 CAGAACAAACATTCTC
Oceanobacillus iheyensis HTE831 OB1670 -227 3.9 GCAAACACTCGTTCTA
-198 4.6 AAGATCATATGTTCGG
-163 4.7 AAGAACAATTGTTCTG
Position: -78
Score: 5.2
Sequence: TCGAACTTATGTTTGT
Locus tag: Bcer98_2344
Bcer98_2344 -78 5.2 TCGAACTTATGTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lexA
Ortholog function: SOS-response transcriptional repressor
Bacillus subtilis subsp. subtilis str. 168 BSU17850 -139 4.2 AGGAATGTTTGTTCGC
-102 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus amyloliquefaciens FZB42 RBAM_017650 -140 4.5 AAGAATGTTTGTTCGC
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus pumilus SAFR-032 BPUM_1686 -142 4.6 TAGAATGTGTGTTCGT
-103 4.4 ACGAACAAACGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Bacillus licheniformis DSM 13 BLi02032 -346 4.1 ATGAATTTGTGTTTGT
-141 4.2 CAGAATGTTTGTTCGG
-103 4.6 ACGAACAAATGTTTCT
-73 5.1 TCGAACCTATGTTTGT
Anoxybacillus flavithermus WK1 Aflv_1506 -110 5.2 TAGAACATTTGTTTGT
-82 4.8 GAGAACTTTTGTTCGT
-53 5.2 TCGAACTTATGTTTGT
Geobacillus kaustophilus HTA426 GK1328 -136 4.5 TAGAATGTTTGTTCGC
-103 4.9 AGGAACATTTGTTTGT
-74 5.1 TCGAACCTATGTTTGT
Bacillus cereus ATCC 14579 BC3690 -70 5.2 TCGAACTTATGTTTGT
Bacillus halodurans C-125 BH2356 -107 4.7 AAGAACACTTGTTTGT
-78 4.9 TAGAACTTATGTTTGC
Bacillus clausii KSM-K16 ABC2167 -107 4.6 AGGAACAACTGTTCGT
-76 4.9 TAGAACTTATGTTTGC
Oceanobacillus iheyensis HTE831 OB1669 -142 4.8 CAGAACAATTGTTCTT
-107 4.6 CCGAACATATGATCTT
-78 4.2 TAGAACGAGTGTTTGC
Paenibacillus sp. JDR-2 Pjdr2_2621 -157 4.4 CCGAACGTTTGTTCTG
-118 5.1 ACGAACAAATGTTTGC
-72 5.1 AAGAACTTATGTTTGT
Position: -84
Score: 5.1
Sequence: TCGAATAAATGTTCGA
Locus tag: Bcer98_2431
Bcer98_2431 -84 5.1 TCGAATAAATGTTCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: recA
Ortholog function: Recombination protein A
Bacillus subtilis subsp. subtilis str. 168 BSU16940 -87 4.7 CCGAATATGCGTTCGC
Bacillus amyloliquefaciens FZB42 RBAM_016780 -86 4.7 CCGAATATGCGTTCGC
Bacillus pumilus SAFR-032 BPUM_1598 -88 5.2 TCGAATATGTGTTCGT
Bacillus licheniformis DSM 13 BLi01918 -259 4.3 TCGAATTTCAGTTCGC
-86 4.8 TCGAATATGCGTTCGC
Anoxybacillus flavithermus WK1 Aflv_1530 34 4.7 ACGAACATCTATTCGT
Geobacillus kaustophilus HTA426 GK1295 -85 4.4 ACGAATGGACGTTCGT
Bacillus cereus ATCC 14579 BC3779 -85 5.1 TCGAATAAATGTTCGA
Bacillus halodurans C-125 BH2383 -343 4 AAAAATTCACGTTTGT
-121 4.9 GCGAATAAATGTTCGT
Bacillus clausii KSM-K16 ABC2199 -132 5.3 ACGAATAAATGTTCGT
Oceanobacillus iheyensis HTE831 OB1624 -82 4.4 AAGAACATCCATTCGT
Paenibacillus sp. JDR-2 Pjdr2_3379 -297 3.9 GCGAACAATAATTTGT
-84 4.9 ACGAATGTATGTTCGA
Position: -85
Score: 4
Sequence: GAGAACATTTGTTGGG
Locus tag: Bcer98_3138
Bcer98_3138 -85 4 GAGAACATTTGTTGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ruvA
Ortholog function: holliday junction DNA helicase, subunit A
Anoxybacillus flavithermus WK1 Aflv_0711 -282 4.1 CAGAAGATTCGTTTGA
Bacillus cereus ATCC 14579 BC4415 -85 4 GAGAACATTTGTTGGG
Bacillus clausii KSM-K16 ABC1554 -43 4.4 AGAAATAAATGTTCGC
Position: -73
Score: 4.1
Sequence: AAGAACGTATGTTGGG
Locus tag: Bcer98_3219
Bcer98_3219 -73 4.1 AAGAACGTATGTTGGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrC
Ortholog function: Excinuclease ABC subunit C
Bacillus subtilis subsp. subtilis str. 168 BSU28490 -59 5 AAAAACAAACGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_025550 -62 5.2 AAAAACAAATGTTCGT
Bacillus pumilus SAFR-032 BPUM_2506 -62 5.2 TAAAACAAATGTTCGT
Bacillus cereus ATCC 14579 BC4520 -83 4.1 AAGAACGTATGTTGGG
Paenibacillus sp. JDR-2 Pjdr2_4818 -329 4.3 CGAAACATGCGTTCGA
Position: -85
Score: 5.1
Sequence: CCGAATATTTGTTCGT
Locus tag: Bcer98_3710
Bcer98_3710 -85 5.1 CCGAATATTTGTTCGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uvrB
Ortholog function: Excinuclease ABC subunit B
Bacillus subtilis subsp. subtilis str. 168 BSU35170 -93 4.9 CCGAACTTTAGTTCGT
Bacillus amyloliquefaciens FZB42 RBAM_032310 -90 5 TCGAACTTTAGTTCGT
Bacillus pumilus SAFR-032 BPUM_3148 -82 4.9 CCGAACTTTAGTTCGT
Bacillus licheniformis DSM 13 BLi03759 -81 4.9 CCGAACTTTAGTTCGT
Anoxybacillus flavithermus WK1 Aflv_2547 -81 5.1 TAGAATATTTGTTCGT
Geobacillus kaustophilus HTA426 GK3086 -85 4.8 ACGAATATGAGTTCGC
Bacillus cereus ATCC 14579 BC5168 -86 4.9 CCGAATATCTGTTCGT
Bacillus halodurans C-125 BH3595 -91 4.9 CAAAACAAACGTTCGT
Bacillus clausii KSM-K16 ABC3059 -337 4.4 TAGTACGTATGTTCGT
Oceanobacillus iheyensis HTE831 OB2488 -70 4.7 ACGAATACTTGTTCGT
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