Regulons of Mycobacterium marinum M

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	AcnR	Citrate	Tricarboxylic acid cycle	2	1
TF	ArgR	Arginine	Arginine biosynthesis	1	1
TF	ArsR	Arsenite; Arsenate	Arsenic resistance	1	1
TF	DosR	Oxygen; Carbon monoxide; Nitric oxide	Dormancy	43	44
TF	HrcA	Heat shock	Heat shock response	3	4
TF	HspR	Heat shock	Heat shock response	4	4
TF	LexA	DNA damage	SOS response	9	11
TF	LtbR		Leucine biosynthesis	2	4
TF	MntR	Manganese ion, (Mn2+)	Manganese homeostasis	2	2
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	2	4
TF	NrtR	Adenosine diphosphate ribose	NAD biosynthesis	2	2
TF	PdxW		Pyridoxine/pyridoxal homeostasis	2	2
TF	Znr	Zinc ion, (Zn2+)	Zinc homeostasis	1	1
TF	Zur	Zinc ion, (Zn2+)	Zinc homeostasis	6	7
RNA	Cobalamin	Adenosylcobalamin	Cobalamin biosynthesis	5	3
RNA	Glycine	Glycine	Glycine metabolism	3	4
RNA	PyrR	PyrR	Pyrimidine metabolism	1	1
RNA	SAH_riboswitch	S-adenosylhomocysteine	Methionine metabolism	1	1
RNA	SAM-IV	S-adenosylmethionine	Sulfur metabolism	1	1
RNA	T-box(Ile)	Ile-tRNA	Amino acid metabolism	1	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	2	2
RNA	ydaO-yuaA		Osmotic stress response; Cell wall metabolism	1	1
RNA	ykoK	Magnesium ion, (Mg2+)	Magnesium homeostasis	3	2
RNA	yybP-ykoY			1	1

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --