Profile of regulator SoxR in Shewanellaceae
Properties
| Regulator family: |
MerR |
| Regulation mode: |
repressor |
| Biological process: |
Superoxide stress response |
| Effector: |
Paraquat |
| Regulog: |
SoxR - Shewanellaceae |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Shewanella denitrificans OS217
|
|
Sden_2124 |
PF00903 |
-56 |
7.3 |
ACCTCAAGCTAACTTGAGGT |
|
Sden_2125 |
soxR |
-116 |
7.3 |
ACCTCAAGTTAGCTTGAGGT |
|
Sden_0647 |
Sden_0647 |
-61 |
7 |
ACCTCAAGTTAGCTTGAGCT |
|
Shewanella frigidimarina NCIMB 400
|
|
Sfri_1566 |
PF00903 |
-57 |
7 |
ACCTCAAGTTAGCTTTAGGT |
|
Sfri_1565 |
soxR |
-64 |
7 |
ACCTAAAGCTAACTTGAGGT |
|
Shewanella amazonensis SB2B
|
|
Sama_3348 |
PF11158 |
-62 |
6.2 |
ACCTCAAGTTGACTTGAAGT |
|
Sama_3347 |
soxR |
-32 |
6.2 |
ACTTCAAGTCAACTTGAGGT |
|
Shewanella loihica PV-4
|
|
Shew_0422 |
PF11158 |
-65 |
5.7 |
ACCTCAAGTCGACTTGAAGT |
|
Shew_0423 |
soxR |
-32 |
5.7 |
ACTTCAAGTCGACTTGAGGT |
|
Shewanella piezotolerans WP3
|
|
swp_2308 |
acrA |
-69 |
6.7 |
ACCTCAAGTTAACTTGATGT |
|
swp_2307 |
soxR |
-49 |
6 |
ATCTCAAGTTAACTTTAGAT |
|
Shewanella woodyi ATCC 51908
|
|
Swoo_3439 |
soxR |
-113 |
4.4 |
AgtTaAAGTcgACTTtAaGT |
Export
|
Regulatory Sites
|
[ FASTA format ]
|
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