Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Profile of regulator SMK_box_riboswitch in Lactobacillaceae

Properties
Regulator family: RF01767
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylmethionine
Regulog: SMK_box_riboswitch - Lactobacillaceae
Member of regulog collections
Transcription factor binding sites
Locus Tag Name Position Score Sequence
Lactobacillus acidophilus NCFM
LBA1622 metK -89 61.7 TTATCGGTTCAAGTCCTGAAAGGATTCATTAAATAATTAGTGAAGATGCCTTGTAACCGAATAGCCGATGTCTATATAGGGGGACTAATATG
Lactobacillus brevis ATCC 367
LVIS_1523 metK -117 53.3 CTTGAGTTATGAGTCAATTCCCGATAGGATTCACATGCTAGTGAAGCTGCCTTGTAACCGAATGGCGACGAGATTATCGGTCAACTTGCCGTCTACTATATCTAGGGGGAATATCCATTG
Lactobacillus casei ATCC 334
LSEI_0877 metK -85 65.4 AGAGTTGCAAAACATTCCCGATGGGGTTCGTCAAAACTATGACGAACATGCCTTGTAACCTAAAATAATAAGGGGGAAACAAAACATGCA
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
LBUL_1455 metK -86 63.1 TATTTGTTACAAGTCCTGATAGGATTCACCAAATTGGTGAAGATGCCTTGTAACCGTGTAGCTAGTCTATAGGGGGACACATATAGATG
Lactobacillus fermentum IFO 3956
LAF_1358 metK -90 41.5 GTTATGAAGCAATTCCCGATGGGGGGAGCCCAGTGCTCCGCTGCCTTGTAACCGCAAAACACTATGTTTAGAAAATGGGGGAATTATCACATG
Lactobacillus helveticus DPC 4571
lhv_1731 metK -87 64.2 TTATCGGTTCAAGTCCTGAAAGGATTCACTATTATTAGTGAAGATGCCTTGTAACCGAATAGCTAATGTCTATATGGGGGGACTATTATG
Lactobacillus johnsonii NCC 533
LJ0677 metK -67 63.1 TCGGTTAAGGTCCCGAAAGGATTCGTTTTTAACGAAGATGCCTTGTAACCGAAAGATGGGGGACTCTATGAAAAA
Lactobacillus plantarum WCFS1
lp_1301 metK -102 58.5 ATAGTTATGAGCCGTTCCCGAAAGGATAAGTTTAGCTTGTTCGACGAAGAATAAGTGATGCTTAGATGCCTTGTAACCGAAATTATCAAGGGGGAATTTATTGTGAG
Lactobacillus reuteri JCM 1112
LAR_1229 metK -111 60.1 TTCTCGTTATAAAGCAATTCCCGATAGGATTCACGTCTGAACGTGAAGATGCCTTGTAACCGCAACTACAAACTATTTGAAAGTTTCAATAGAATATGGGGGAATTAGAAAATG
Lactobacillus rhamnosus GG
LGG_00842 metK -84 63.1 AGAGTTGCAATACATTCCCGATGGGGTTCGTTAGCGATTAACGAACATGCCTTGTAACCGAAAATCATGAGGGGGAAACAAACGATGCA
Lactobacillus sakei subsp. sakei 23K
LSA0468 metK -82 68.9 AGAGTTATAAGAAGTTCCCGATAGGATTCACACACCGTGAAGAGGCCTTGTAACCGACACATATATAGGGGGAAACATAGAAATGCA
Lactobacillus salivarius subsp. salivarius UCC118
LSL_0441 metK -84 67.5 ATAGTTACAATCCATTCCCGAAAGGATTCGTTTTAAACGAAGATGCCTTGTAACCAAATTACTTATAATAATGGGGGAATTAAATTGAC
Pediococcus pentosaceus ATCC 25745
PEPE_0641 metK -77 51.1 TAAGTTACTAGTGTTCCCGATAGGATTAGTTATCCAAAAGATCCTTGTAACCGAAATTAAATTTAGGGGGAATTTACATGTC
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