Profile of regulator T-box(Ser) in Lactobacillaceae

Properties
Regulator family:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Ser-tRNA
Regulog:	T-box(Ser) - Lactobacillaceae

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Ser-tRNA
By pathway - Amino acid metabolism

Transcription factor binding sites

	Locus Tag	Name	Position	Score	Sequence
Lactobacillus reuteri JCM 1112
	LAR_0091	serS	-241	63.5	AGAAAACACGAATGCATTTCAAGTAGGTTGTTCAGAGAAGCAGCGGGTGGTGGGAGCTGTCGACCGAAACTCCGGTGCAAAAATATGTGGGCAGGTAATTCTGCACGGATAGTAGCCGTTATCTACTTCGAAGGGTGACTAAAGATAGTCAAACTTGGGTGGTACCGCGGAACTAGAGCCATTTCGTCCCAAAATA
Lactobacillus helveticus DPC 4571
	lhv_1734	serS	-261	69.2	CAGAATGGCTTAAAATAGACGCAAACATGAAATCCTAAGACTACTTCAGAGAGTTCACGGTTGGTGCGAGTGAATGGATGTCGTTTCCAGATTTCGTTAAGATGGGCAATTAATAGTTGCACGGTTTGGCGTCGTTATTCGTCTGTTAAGAGGTGCAGTCTATATCAGACTGAAGATGGGTGGTACCGCGAAGCTGTGCAAGAGCCGATTCGTCCCAAGC
Lactobacillus fermentum IFO 3956
	LAF_0066	serS	-249	69	TAAAATGGCTGTAATTTCAAAACACGGGGTGCTTCAAGTAGGAACCAAGAGAGCTGGCGGGTGGTGGAAGCCAGCTTCCGAAACTCCGGCACCATCAATGTGGGCGGGTAATGCCGCACGGTCTGGTGGCCGTTATTCACCATAGAGCGTGCTGATTTCAGCAAACTTGGGTGGTACCGCGGAACAAGAGCCATTTCGTCCCAACTGT
Lactobacillus salivarius subsp. salivarius UCC118
	LSL_0189	serS	-250	63.1	AAACATCGGAGTTCGCCATAAGTAGGCAGTAAAGAGACGTAGTGGTTGGTGAAAACTATGAGCCGAAAATCCAGCGTTCGTTGTATGGGCAGGTAATGCTGCACGGGAGATCGTTAAATCATTGAGTGTGATGGTTATTTACTGTCGAACTTGGGTGGTACCGCGTAAGAAGAAGTCCTTTCGTCCCAATTTT
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
	LBUL_1748	serS	-251	68.8	GCGAATAGCATAGAATAGAGACAAACACGAAATCCCTAGACTGCCGACAGAGAGTCCGCGTATGCTGAGAGCGGACGGCGGTCGCTTCCAGATTTCATTAGTGTGGGCAATTAATCATTGCACGGCCGGGCACCGTTAACGCTCAACTGAGTGCGGCTCTTTGAGCCGAAACTGGGTGGTACCGCGAACCGTGCGCCGATTCGTCCCAAGA
Lactobacillus acidophilus NCFM
	LBA1626	serS	-253	77.6	AAAATAGACGCAAACACAAAATCCTAAGACTGCTTCAGAGAGTTCACGGTTGGTGCGAGTGAATGCATAGTCGTTTCCAGATTTTATTTAAAGTGGGCAATTAATAGTTGCACGGTTTGGCGTCGTTACTCGTCTATTAAAGAGGTGCAGTCTAATTTAGACTGAAAATGGGTGGTACCGCGAAACTGTGTAAGAGCCGATTCGTCCCAGTA
Lactobacillus johnsonii NCC 533
	LJ0676	serS	-249	69.4	GCATGATATAATGCAAATAAACATGAAATCCTAAGACTAGTTTCAGAGAGCTCATGGTTGGTGTGAATGAGTAAAAAAGTCGTTTCCAGATTTCGAATGTGGGTAGGTAATTCTACACGGTTAGCACCGTTATCGCTTTTTGAGTGTGGTATTTTTTAACCAAATGTGGGTGGTACCGCGAACCGTGTAAGTCGATTCGTCCCCGTG
Lactobacillus plantarum WCFS1
	lp_1012	serS	-240	60.4	TAAACACGGCGCGTTTTTAAGTAGACGTTCAGAGAACCGGTGGGTGGTGTGAATCGGTAGTCGAAACTCCGGCGCGACAATGTGGGCAGGTAATACTGCACGGCACGGCCGTTATCCGTTTAAGGGTGGGATTAATCATGATCCTGAACTTGGGTGGTACCGCGAATCGCAGTCTCTTCGTCCCAATTGG
	lp_0501	serS	-240	70.2	AAAGCGCAAACATAATGGGCTAGTAGTTAATCTGGTTATTTAGAAAGCCAACGGTTGCTGAAAGTTGGTTGATTGGACTGATGAATCCGCCATTTAGCGTTTGACTTCATTTTTAAGAGGTCGCGGTGAGACGATATACTCGTAGAGCAGTAAATTGGGTGGTACCACGTTGATAAAAAACGTCCCATAGTC
Lactobacillus casei ATCC 334
	LSEI_1836	serS	-257	65.2	AGCAAACACGTCTGAAGCGTCTATTGGATGATCAAGAGAGACAGCGGTTGGTGAAAGCTGTCAGCCATCCATATTCCAGCGCCTTAGTGGGTAGTGATGAACTGCACGGCCACTGACCGTTATCAGTTATTGAGGGTGGCGCATAGGCGTCAAACTTGGGTGGCACCGCGGAATGGCCTTTCGTCCCAACG
Lactobacillus brevis ATCC 367
	LVIS_1710	serS	-240	53	AATAAACACGAGGTGCCTATCCAGTAGACGGCCAGAGAAGCGGGGAAAGCTGCAAGCCGCAACGTCGAAAATTCCAGCACTAAAAAAGTGGGCGGGTAATGCCGCACGGTGCAGACCGTTATCATGTTCAAGGGTGTCATTGCGTGCAATGACGAACTTGGGTGGTACCGCGAAGGTCTTCGTCCCATGT
Lactobacillus sakei subsp. sakei 23K
	LSA1803	serS	-257	79.1	GAAAAACACGTGAATAAGCGCCTATATGGATTGACAGAGAGATACCGGTTGGTGGAAGGTATTGAATCCAGTATTCCAGCGTAATAGTGGGTAGTGAATAACTACACGGCACCTGACCGTTATCAGCAATGAAGGGCACTGGTTATTTGGTAATCAGTGAACTTGGGTGGTACCGCGAATGTGAAGTCTTTTCGTCCCAATT
Pediococcus pentosaceus ATCC 25745
	PEPE_1436	serS	-236	55.2	AATAGAGAAATTAAAGGCGTTTAAAGTAGGTTTTTAGAGAGATCCGCATGGTGGAAAGGATTAGCCGAAACTCCGGCGCTAGTTAAAAGGTGGGTAATGCCACACGGTGATTCCGTTATCGTCGGATTGAGTGCACCGCTTATATAAGCAGGTGAACTTGGGTGGTACCGCGAAAAGAGTCTCTTCGTCCCAATG
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
	LEUM_0182	serS	-248	69.9	CATCAGTTACCATAAGTAGCGCATTTTAGAAAATCATTGGTTGATGAAAAATGGTACGCGTGAAACTCCAGTAACAAACAGTTTAGCAGGTAATGCTGCTCGGGATCGCCGTTATTGATAATGAAGTGTTATGGTTTATTTATATAATCATAAAAATTGGGTGGTACCACGGAAATGCGTTTTTCGTCCCTTGTTT
Lactobacillus rhamnosus GG
	LGG_01893	serS	-353	73.9	AGTAAACACGTCTGAAGCGCCTAATGGATGTTTTAGAGAGTTAGCGGGTGGTGCAAGCTGACATATCATCCTCATTCCAGCGCCTTAGTGGGCAGTGATGAACTGCACGGTGACAACCGTTATCAGCCTCAAGAGGGTGGCGTTATGCGCCAAACTTGGGTGGTACCGCGGAAAAAGCCTTTCGTCCCATTA

Export
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Profile of regulator T-box(Ser) in Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --