Regulog T-box(Ser) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Ser-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Ser-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus helveticus DPC 4571 | 1 | 1 |
| Lactobacillus fermentum IFO 3956 | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 1 | 1 |
| Lactobacillus acidophilus NCFM | 1 | 1 |
| Lactobacillus johnsonii NCC 533 | 1 | 1 |
| Lactobacillus plantarum WCFS1 | 2 | 2 |
| Lactobacillus casei ATCC 334 | 1 | 1 |
| Lactobacillus brevis ATCC 367 | 1 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| serS |
Gene: OEOE_0440: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus reuteri JCM 1112 Site: position = -241 score = 63.5 sequence = AGAAAACACGAATGC... Gene: LAR_0091: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus helveticus DPC 4571 Site: position = -261 score = 69.17 sequence = CAGAATGGCTTAAAA... Gene: lhv_1734: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus fermentum IFO 3956 Site: position = -249 score = 68.99 sequence = TAAAATGGCTGTAAT... Gene: LAF_0066: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -250 score = 63.09 sequence = AAACATCGGAGTTCG... Gene: LSL_0189: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -251 score = 68.83 sequence = GCGAATAGCATAGAA... Gene: LBUL_1748: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus acidophilus NCFM Site: position = -253 score = 77.61 sequence = AAAATAGACGCAAAC... Gene: LBA1626: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus johnsonii NCC 533 Site: position = -249 score = 69.44 sequence = GCATGATATAATGCA... Gene: LJ0676: Seryl-tRNA synthetase (EC 6.1.1.11) |
*2
Lactobacillus plantarum WCFS1 Site: position = -240 score = 70.2 sequence = AAAGCGCAAACATAA... Gene: lp_0501: Seryl-tRNA synthetase (EC 6.1.1.11) Site: position = -240 score = 60.43 sequence = TAAACACGGCGCGTT... Gene: lp_1012: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus casei ATCC 334 Site: position = -257 score = 65.2 sequence = AGCAAACACGTCTGA... Gene: LSEI_1836: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus brevis ATCC 367 Site: position = -240 score = 53.03 sequence = AATAAACACGAGGTG... Gene: LVIS_1710: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -257 score = 79.14 sequence = GAAAAACACGTGAAT... Gene: LSA1803: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -236 score = 55.16 sequence = AATAGAGAAATTAAA... Gene: PEPE_1436: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -248 score = 69.88 sequence = CATCAGTTACCATAA... Gene: LEUM_0182: Seryl-tRNA synthetase (EC 6.1.1.11) |
*
Lactobacillus rhamnosus GG Site: position = -353 score = 73.86 sequence = AGTAAACACGTCTGA... Gene: LGG_01893: Seryl-tRNA synthetase (EC 6.1.1.11) |
Seryl-tRNA synthetase (EC 6.1.1.11) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |