Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog T-box(Ser) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ser-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 2 2
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
serS
 
Oenococcus oeni PSU-1

Gene: OEOE_0440: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus reuteri JCM 1112

Site:
position = -241
score = 63.5
sequence = AGAAAACACGAATGC...

Gene: LAR_0091: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus helveticus DPC 4571

Site:
position = -261
score = 69.17
sequence = CAGAATGGCTTAAAA...

Gene: lhv_1734: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus fermentum IFO 3956

Site:
position = -249
score = 68.99
sequence = TAAAATGGCTGTAAT...

Gene: LAF_0066: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -250
score = 63.09
sequence = AAACATCGGAGTTCG...

Gene: LSL_0189: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -251
score = 68.83
sequence = GCGAATAGCATAGAA...

Gene: LBUL_1748: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus acidophilus NCFM

Site:
position = -253
score = 77.61
sequence = AAAATAGACGCAAAC...

Gene: LBA1626: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus johnsonii NCC 533

Site:
position = -249
score = 69.44
sequence = GCATGATATAATGCA...

Gene: LJ0676: Seryl-tRNA synthetase (EC 6.1.1.11)
*2
Lactobacillus plantarum WCFS1

Site:
position = -240
score = 70.2
sequence = AAAGCGCAAACATAA...

Gene: lp_0501: Seryl-tRNA synthetase (EC 6.1.1.11)

Site:
position = -240
score = 60.43
sequence = TAAACACGGCGCGTT...

Gene: lp_1012: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus casei ATCC 334

Site:
position = -257
score = 65.2
sequence = AGCAAACACGTCTGA...

Gene: LSEI_1836: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus brevis ATCC 367

Site:
position = -240
score = 53.03
sequence = AATAAACACGAGGTG...

Gene: LVIS_1710: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -257
score = 79.14
sequence = GAAAAACACGTGAAT...

Gene: LSA1803: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -236
score = 55.16
sequence = AATAGAGAAATTAAA...

Gene: PEPE_1436: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -248
score = 69.88
sequence = CATCAGTTACCATAA...

Gene: LEUM_0182: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Lactobacillus rhamnosus GG

Site:
position = -353
score = 73.86
sequence = AGTAAACACGTCTGA...

Gene: LGG_01893: Seryl-tRNA synthetase (EC 6.1.1.11)
Seryl-tRNA synthetase (EC 6.1.1.11)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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