Regulon of RhaR in Thermotoga petrophila RKU-1
| Regulator type: | Transcription factor |
| TF locus tag: | Tpet_1675 |
| Regulator family: | DeoR |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization; Rhamnose oligosaccharides utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Thermotogales |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermotogales
- By TF family - DeoR
- By effector - Rhamnose
- By pathway - Rhamnose utilization
- By pathway - Rhamnose oligosaccharides utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -78
Score: 5.7 Sequence: AGTTGATATCATATTGATAA
Position: -47
Score: 5.3 Sequence: TTATGATAAATTTATGATCG
Locus tag: Tpet_1677
Name: rtpE Funciton: Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tpet_1678
Name: null Funciton: FG-GAP repeat protein
Locus tag: Tpet_1679
Name: aguE2 Funciton: homolog of alpha-1,4-digalacturonate ABC transporter, substrate-binding protein
Locus tag: Tpet_1680
Name: aguF2 Funciton: homolog of alpha-1,4-digalacturonate ABC transporter, permease protein 1
Locus tag: Tpet_1681
Name: aguG2 Funciton: homolog of alpha-1,4-digalacturonate ABC transporter, permease protein 2
Locus tag: Tpet_1682
Name: ramA Funciton: alpha-L-rhamnosidase
Locus tag: Tpet_1683
Name: rtpF Funciton: Predicted rhamnose oligosaccharide ABC transporter, permease component 1
Locus tag: Tpet_1684
Name: rtpG Funciton: Predicted rhamnose oligosaccharide ABC transporter, permease component 2
Locus tag: Tpet_1685
Name: rtpK Funciton: Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2
Locus tag: Tpet_1686
Name: rtpL Funciton: Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1
Locus tag: Tpet_1687
Name: rtpE Funciton: Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component
Locus tag: Tpet_1688
Name: bglJ Funciton: putative beta-glucosidase
Locus tag: Tpet_1689
Name: gusB Funciton: putative beta-glucuronidase
Locus tag: Tpet_1690
Name: TM1061 Funciton: putative unsaturated glucuronyl hydrolase |
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rtpE
|
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component
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FG-GAP repeat protein
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aguE2
|
homolog of alpha-1,4-digalacturonate ABC transporter, substrate-binding protein
|
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aguF2
|
homolog of alpha-1,4-digalacturonate ABC transporter, permease protein 1
|
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aguG2
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homolog of alpha-1,4-digalacturonate ABC transporter, permease protein 2
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ramA
|
alpha-L-rhamnosidase
|
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rtpF
|
Predicted rhamnose oligosaccharide ABC transporter, permease component 1
|
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rtpG
|
Predicted rhamnose oligosaccharide ABC transporter, permease component 2
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rtpK
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Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2
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rtpL
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Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1
|
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rtpE
|
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component
|
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bglJ
|
putative beta-glucosidase
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gusB
|
putative beta-glucuronidase
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TM1061
|
putative unsaturated glucuronyl hydrolase
|
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Position: -56
Score: 6.7 Sequence: TTGTGATTAATTTATGATAA
Locus tag: Tpet_1674
Name: rhaM2 Funciton: L-rhamnose mutarotase, alternative
Locus tag: Tpet_1673
Name: rhaA Funciton: Alternative L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: Tpet_1672
Name: rhaD Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
Locus tag: Tpet_1671
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5)
Locus tag: Tpet_1670
Name: rhaC Funciton: glycoside hydrolase family 2 sugar binding |
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rhaM2
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L-rhamnose mutarotase, alternative
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rhaA
|
Alternative L-rhamnose isomerase (EC 5.3.1.14)
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rhaD
|
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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rhaC
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glycoside hydrolase family 2 sugar binding
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Position: -29
Score: 4.4 Sequence: TTATCATAAATTAATCACAA
Locus tag: Tpet_1675
Name: rhaR Funciton: Predicted regulator of rhamnose utilization, DeoR family
Locus tag: Tpet_1676
Name: agu4C Funciton: Alpha-glucuronidase (EC 3.2.1.139) |
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rhaR
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Predicted regulator of rhamnose utilization, DeoR family
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agu4C
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Alpha-glucuronidase (EC 3.2.1.139)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |