Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of PaaR in Arthrobacter sp. FB24

Properties
Regulator type: Transcription factor
TF locus tag: Arth_3248
Regulator family: TetR
Regulation mode: repressor
Biological process: Phenylacetic acid degradation
Effector: Phenylacetyl-CoA
Regulog: PaaR - Micrococcineae
Statistics of regulated genes:
- Genes 15
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 38 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -87
Score: 5.7
Sequence: ACTGACCGTTCGATCGGTAATT
Locus tag: Arth_2568
Name: paaT
Funciton: Predicted phylacetic acid transporter PaaT
paaT
Predicted phylacetic acid transporter PaaT

Position: -132
Score: 4.6
Sequence: CATTACTGACCGTCCGTTCGGT
Position: -128
Score: 5.6
Sequence: ACTGACCGTCCGTTCGGTAATA
Locus tag: Arth_3256
Name: paaY
Funciton: putative thioesterase family domain protein
paaY
putative thioesterase family domain protein

Position: -49
Score: 5.6
Sequence: CCTGAACGAACGGTCGGTAATT
Locus tag: Arth_3218
Name: paaA
Funciton: Phenylacetate-CoA oxygenase, PaaA subunit
Locus tag: Arth_3217
Name: paaB
Funciton: Phenylacetate-CoA oxygenase, PaaB subunit
Locus tag: Arth_3216
Name: paaC
Funciton: Phenylacetate-CoA oxygenase, PaaC subunit
Locus tag: Arth_3215
Name: paaD
Funciton: Phenylacetate-CoA oxygenase, PaaD subunit
Locus tag: Arth_3214
Name: paaE
Funciton: Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
Locus tag: Arth_3213
Name: paaG
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
paaA
Phenylacetate-CoA oxygenase, PaaA subunit
paaB
Phenylacetate-CoA oxygenase, PaaB subunit
paaC
Phenylacetate-CoA oxygenase, PaaC subunit
paaD
Phenylacetate-CoA oxygenase, PaaD subunit
paaE
Probable phenylacetic acid degradation NADH oxidoreductase paaE (EC 1.-.-.-)
paaG
Enoyl-CoA hydratase (EC 4.2.1.17)

Position: -83
Score: 5.1
Sequence: ATAGAACGAACGGTCGGTAAAT
Locus tag: Arth_3268
Name: paaJ
Funciton: Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
Locus tag: Arth_3267
Name: paaF
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17)
Locus tag: Arth_3266
Name: paaH
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)
paaJ
Beta-ketoadipyl CoA thiolase (EC 2.3.1.-)
paaF
Enoyl-CoA hydratase (EC 4.2.1.17)
paaH
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157)

Position: -32
Score: 4.4
Sequence: ATTGACCGAACGTTCATGAGAA
Locus tag: Arth_3248
Name: paaR
Funciton: transcriptional regulator, TetR family
paaR
transcriptional regulator, TetR family

Position: -42
Score: 5.1
Sequence: ACCTAATGAACATTCGGTAAAT
Locus tag: Arth_3246
Name: paaI
Funciton: Phenylacetic acid degradation protein PaaI, thioesterase
Locus tag: Arth_3247
Name: paaK
Funciton: Phenylacetate-coenzyme A ligase (EC 6.2.1.30)
paaI
Phenylacetic acid degradation protein PaaI, thioesterase
paaK
Phenylacetate-coenzyme A ligase (EC 6.2.1.30)

Position: -72
Score: 5.6
Sequence: TATTACCGAACGGACGGTCAGT
Locus tag: Arth_3255
Name: paaZ
Funciton: Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
paaZ
Aldehyde dehydrogenase (EC 1.2.1.3), PaaZ
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD