Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of FixK in Caulobacter segnis ATCC 21756

Properties
Regulator type: Transcription factor
TF locus tag: Cseg_3612
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Oxidative stress response; Nitrogen fixation
Effector: Oxygen
Regulog: FixK - Caulobacterales
Statistics of regulated genes:
- Genes 23
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -92
Score: 5.8
Sequence: TCCTTGATCACGATCAAGGC
Locus tag: Cseg_3605
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: Cseg_3604
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: Cseg_3603
Name: cydX
Funciton: CydX protein, presumably involved in maturation of CydAB complex
Cseg_3605
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Cseg_3604
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Cseg_3603
cydX
CydX protein, presumably involved in maturation of CydAB complex
Position: -65
Score: 4.7
Sequence: GGATTGATCCAAATCACGGC
Locus tag: Cseg_1891
Name: hemN
Funciton: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
Cseg_1891
hemN
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
Position: -45
Score: 4.2
Sequence: ACATTGATCATCGTCAAATC
Position: -12
Score: 4.9
Sequence: GCCGTGAGGGATATGAAGGC
Locus tag: Cseg_0283
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Cseg_0284
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Cseg_0285
Name: ctaB
Funciton: Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Locus tag: Cseg_0286
Name: ctaX
Funciton: Hypothetical protein in cta-cyo gene cluster
Locus tag: Cseg_0287
Name: ctaG
Funciton: Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Cseg_0288
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Cseg_0283
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Cseg_0284
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Cseg_0285
ctaB
Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Cseg_0286
ctaX
Hypothetical protein in cta-cyo gene cluster
Cseg_0287
ctaG
Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Cseg_0288
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -75
Score: 5.7
Sequence: GCTTTGAGACAGATCAAAGC
Locus tag: Cseg_1883
Name: ccoN
Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: Cseg_1884
Name: ccoO
Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: Cseg_1885
Name: ccoQ
Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: Cseg_1886
Name: ccoP
Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Locus tag: Cseg_1887
Name: ccoG
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: Cseg_1888
Name: ccoH
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: Cseg_1889
Name: ccoI
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Cseg_1890
Name: ccoS
Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Cseg_1883
ccoN
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Cseg_1884
ccoO
Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Cseg_1885
ccoQ
Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Cseg_1886
ccoP
Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Cseg_1887
ccoG
Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Cseg_1888
ccoH
Type cbb3 cytochrome oxidase biogenesis protein CcoH
Cseg_1889
ccoI
Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Cseg_1890
ccoS
Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
Position: -139
Score: 5.2
Sequence: ACTTTGATCCCGGTCAAAAC
Locus tag: Cseg_3612
Name: fixK
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
Cseg_3612
fixK
Nitrogen fixation and oxygen response transcriptional regulator FixK, Crp family
Position: -64
Score: 4.9
Sequence: GCCTTGACCTGCCTCAAACG
Locus tag: Cseg_3609
Name: fixL
Funciton: Two-component oxygen-sensor histidine kinase FixL
Locus tag: Cseg_3610
Name: fixJ
Funciton: Nitrogen fixation and oxygen response transcriptional regulator FixJ, LuxR family
Cseg_3609
fixL
Two-component oxygen-sensor histidine kinase FixL
Cseg_3610
fixJ
Nitrogen fixation and oxygen response transcriptional regulator FixJ, LuxR family
Position: -50
Score: 5.8
Sequence: GCCTTGATCGTGATCAAGGA
Locus tag: Cseg_3606
Name: cydD
Funciton: ATP-binding/permease protein CydD
Locus tag: Cseg_3607
Name: cydC
Funciton: ATP-binding/permease protein CydC
Cseg_3606
cydD
ATP-binding/permease protein CydD
Cseg_3607
cydC
ATP-binding/permease protein CydC
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