Regulon of FnrN in Novosphingobium aromaticivorans DSM 12444
| Regulator type: | Transcription factor |
| TF locus tag: | Saro_2581 |
| Regulator family: | CRP |
| Regulation mode: | activator (repressor) |
| Biological process: | Oxidative stress response; Nitrogen fixation |
| Effector: | Oxygen |
| Regulog: | FnrN - Sphingomonadales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - FnrN/FixK
- By TF family - CRP
- By effector - Oxygen
- By pathway - Oxidative stress response
- By pathway - Nitrogen fixation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -232
Score: 4.6 Sequence: GTTTTGACATCCGTCAACGC
Locus tag: Saro_2581
Name: fnrN Funciton: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family |
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fnrN
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Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family
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Position: -179
Score: 4.9 Sequence: ACATTGACCCTTGTCAAATA
Position: -112
Score: 4.6 Sequence: TTTTTGCGCTCCGTCAATGT
Locus tag: Saro_2579
Name: ompW Funciton: Outer membrane protein W precursor |
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ompW
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Outer membrane protein W precursor
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Position: -71
Score: 4.3 Sequence: AATTTGACGTGGATCATGGT
Locus tag: Saro_0571
Name: uspA Funciton: Predicted universal stress protein UspA |
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uspA
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Predicted universal stress protein UspA
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Position: -68
Score: 4.9 Sequence: AATTTGCCATATCTCAATGC
Locus tag: Saro_2569
Name: hemN Funciton: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) |
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hemN
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Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)
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Position: -144
Score: 4.6 Sequence: ACATTGACGGAGCGCAAAAA
Position: -77
Score: 4.9 Sequence: TATTTGACAAGGGTCAATGT
Locus tag: Saro_2578
Name: ccoN Funciton: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
Locus tag: Saro_2577
Name: ccoO Funciton: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
Locus tag: Saro_2576
Name: ccoQ Funciton: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
Locus tag: Saro_2575
Name: ccoP Funciton: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
Locus tag: Saro_2574
Name: ccoG Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
Locus tag: Saro_2573
Name: ccoH Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoH
Locus tag: Saro_2572
Name: ccoI Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
Locus tag: Saro_2571
Name: ccoS Funciton: Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion |
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ccoN
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Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
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ccoO
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Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
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ccoQ
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Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
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ccoP
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Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)
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ccoG
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Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation
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ccoH
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Type cbb3 cytochrome oxidase biogenesis protein CcoH
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ccoI
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Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4)
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ccoS
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Type cbb3 cytochrome oxidase biogenesis protein CcoS, involved in heme b insertion
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |