Regulon of IdeR in Clostridium nexile DSM 1787
| Regulator type: | Transcription factor |
| TF locus tag: | CLONEX_01968 |
| Regulator family: | DtxR |
| Regulation mode: | repressor |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Regulog: | IdeR - Clostridia-3 |
| Statistics of regulated genes: | |
| - Genes | 15 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By TF family - DtxR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -58
Score: 4.9 Sequence: ATGGTTAGTTAAAACTAATAAA
Locus tag: CLONEX_01965
Name: feoB Funciton: Ferrous iron transport protein B
Locus tag: CLONEX_01964
Name: null Funciton: hypothetical protein
Locus tag: CLONEX_01963
Name: fur Funciton: Transcriptional regulator for iron transport and metabolism, Fur family
Locus tag: CLONEX_01962
Name: null Funciton: hypothetical protein
Locus tag: CLONEX_01961
Name: COG2217 Funciton: Cation transporting ATPase |
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feoB
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Ferrous iron transport protein B
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hypothetical protein
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fur
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Transcriptional regulator for iron transport and metabolism, Fur family
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hypothetical protein
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COG2217
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Cation transporting ATPase
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Position: -65
Score: 6.5 Sequence: AACGTTAGAGTATACTAACCAT
Locus tag: CLONEX_01967
Name: null Funciton: hypothetical protein
Locus tag: CLONEX_01966
Name: feoA Funciton: Ferrous iron transport protein A |
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hypothetical protein
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feoA
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Ferrous iron transport protein A
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Position: -63
Score: 5.1 Sequence: CTGGTTAGTTTAATCTAACAAA
Locus tag: CLONEX_02589
Name: PF05031 Funciton: Iron transport-associated domain
Locus tag: CLONEX_02590
Name: PF11545 Funciton: Cell surface heme-binding protein Shp
Locus tag: CLONEX_02591
Name: COG0614 Funciton: ABC-type Fe3+-hydroxamate transport system, periplasmic component
Locus tag: CLONEX_02592
Name: COG0609 Funciton: ABC-type Fe3+-siderophore transport system, permease component
Locus tag: CLONEX_02593
Name: COG1120 Funciton: ABC-type Fe3+-siderophores transport systems, ATPase components |
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PF05031
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Iron transport-associated domain
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PF11545
|
Cell surface heme-binding protein Shp
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COG0614
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ABC-type Fe3+-hydroxamate transport system, periplasmic component
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COG0609
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ABC-type Fe3+-siderophore transport system, permease component
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COG1120
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ABC-type Fe3+-siderophores transport systems, ATPase components
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Position: -32
Score: 4.9 Sequence: TAAGTTAGAAATAACTAACTCA
Locus tag: CLONEX_01942
Name: null Funciton: hypothetical protein
Locus tag: CLONEX_01941
Name: COG0716 Funciton: Flavodoxins |
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hypothetical protein
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COG0716
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Flavodoxins
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Position: -139
Score: 6 Sequence: ATGGTTAGTATACTCTAACGTT
Locus tag: CLONEX_01968
Name: ideR Funciton: Predicted iron-dependent repressor, DtxR family |
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ideR
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Predicted iron-dependent repressor, DtxR family
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |