Regulon of Zur in Actinosynnema mirum DSM 43827
| Regulator type: | Transcription factor |
| TF locus tag: | Amir_1261, Amir_4413 |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Regulog: | Zur - Frankineae/Propionibacterineae/Pseudonocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 18 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - Zur
- By TF family - FUR
- By effector - Zinc ion, (Zn2+)
- By pathway - Zinc homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -55
Score: 5.5 Sequence: ATTGAAAACGATTGTCTTT
Locus tag: Amir_4413
Name: zur Funciton: Zinc homeostasis transcriptional regulator Zur, Fur family |
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zur
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Zinc homeostasis transcriptional regulator Zur, Fur family
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Position: -65
Score: 5.7 Sequence: GTTGAAAACCGTTGTCATT
Locus tag: Amir_3101
Name: Amir_3101 Funciton: Surface-anchored repeat, actinobacteria
Locus tag: Amir_3100
Name: Amir_3100 Funciton: Surface-anchored repeat, actinobacteria |
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Amir_3101
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Surface-anchored repeat, actinobacteria
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Amir_3100
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Surface-anchored repeat, actinobacteria
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Position: -49
Score: 5.2 Sequence: CTCGACAACGGTTACCATT
Locus tag: Amir_0352
Name: znuA Funciton: Zinc ABC transporter, periplasmic-binding protein ZnuA
Locus tag: Amir_0353
Name: znuC Funciton: Zinc ABC transporter, ATP-binding protein ZnuC
Locus tag: Amir_0354
Name: znuB Funciton: Zinc ABC transporter, inner membrane permease protein ZnuB |
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znuA
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Zinc ABC transporter, periplasmic-binding protein ZnuA
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znuC
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Zinc ABC transporter, ATP-binding protein ZnuC
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znuB
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Zinc ABC transporter, inner membrane permease protein ZnuB
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Position: -39
Score: 5.3 Sequence: GGTGAAAATGATTGTCATT
Locus tag: Amir_0607
Name: rpmB2 Funciton: LSU ribosomal protein L28p
Locus tag: Amir_0606
Name: rpmG2 Funciton: LSU ribosomal protein L33p
Locus tag: Amir_0605
Name: rpsN2 Funciton: SSU ribosomal protein S14p
Locus tag: Amir_0604
Name: rpsR2 Funciton: SSU ribosomal protein S18p |
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rpmB2
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LSU ribosomal protein L28p
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rpmG2
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LSU ribosomal protein L33p
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rpsN2
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SSU ribosomal protein S14p
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rpsR2
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SSU ribosomal protein S18p
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Position: -78
Score: 5.9 Sequence: ATTGAAAACGGTTGTCGTT
Locus tag: Amir_4768
Name: znuA3 Funciton: Zinc ABC transporter, periplasmic-binding protein ZnuA
Locus tag: Amir_4769
Name: null Funciton: hypothetical protein
Locus tag: Amir_4770
Name: znuC3 Funciton: Zinc ABC transporter, ATP-binding protein ZnuC
Locus tag: Amir_4771
Name: znuB3 Funciton: Zinc ABC transporter, inner membrane permease protein ZnuB |
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znuA3
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Zinc ABC transporter, periplasmic-binding protein ZnuA
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hypothetical protein
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znuC3
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Zinc ABC transporter, ATP-binding protein ZnuC
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znuB3
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Zinc ABC transporter, inner membrane permease protein ZnuB
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Position: -60
Score: 5.5 Sequence: ATTGAAAATGATTGTCCTT
Locus tag: Amir_4776
Name: TIGR03773 Funciton: Conserved hypothetical protein CHP03773, ABC transporter-like |
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TIGR03773
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Conserved hypothetical protein CHP03773, ABC transporter-like
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Position: -52
Score: 5.5 Sequence: AATGACAATCGTTTCCGTT
Locus tag: Amir_4416
Name: yciC Funciton: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
Locus tag: Amir_4415
Name: rpmE2 Funciton: LSU ribosomal protein L31p
Locus tag: Amir_4414
Name: rpmF2 Funciton: LSU ribosomal protein L32p |
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yciC
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Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family
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rpmE2
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LSU ribosomal protein L31p
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rpmF2
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LSU ribosomal protein L32p
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |