Regulog Zur - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor |
| Biological process: | Zinc homeostasis |
| Effector: | Zinc ion, (Zn2+) |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - Zur
- By TF family - FUR
- By effector - Zinc ion, (Zn2+)
- By pathway - Zinc homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | 18 | 7 |
| Saccharopolyspora erythraea NRRL 2338 | 10 | 3 |
| Saccharomonospora viridis DSM 43017 | 3 | 1 |
| Nakamurella multipartita DSM 44233 | 5 | 3 |
| Frankia sp. EAN1pec | 5 | 2 |
| Frankia sp. CcI3 | ||
| Acidothermus cellulolyticus 11B | ||
| Propionibacterium acnes KPA171202 | 13 | 4 |
| Nocardioides sp. JS614 | 4 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| rpmB2 |
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Actinosynnema mirum DSM 43827 Site: position = -39 score = 5.25293 sequence = GGTGAAAATGATTGTCATT Gene: Amir_0607: LSU ribosomal protein L28p |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -34 score = 5.64265 sequence = AATGAAAACGGATGTCGTT Site: position = -88 score = 4.8512 sequence = GTCGGCAACGGTTTTCATT Gene: SACE_0754: LSU ribosomal protein L28p |
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Nakamurella multipartita DSM 44233 Site: position = -126 score = 4.91838 sequence = AACGAGACCGATTCTCAGT Gene: Namu_3856: LSU ribosomal protein L28p |
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Propionibacterium acnes KPA171202 Site: position = -43 score = 5.13255 sequence = TATGATAATGATTCTCATA Gene: PPA2158: LSU ribosomal protein L28p |
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LSU ribosomal protein L28p |
| rpmG2 |
Gene: Amir_0606: LSU ribosomal protein L33p |
Gene: SACE_0753: LSU ribosomal protein L33p |
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Nakamurella multipartita DSM 44233 Site: position = -43 score = 4.91643 sequence = ACTGAGAATCGGTCTCGTT Gene: Namu_3855: LSU ribosomal protein L33p |
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Gene: PPA2160: LSU ribosomal protein L33p |
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LSU ribosomal protein L33p |
| rpsN2 |
Gene: Amir_0605: SSU ribosomal protein S14p |
Gene: SACE_0752: SSU ribosomal protein S14p |
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Gene: PPA2161: SSU ribosomal protein S14p |
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SSU ribosomal protein S14p |
| rpsR2 |
Gene: Amir_0604: SSU ribosomal protein S18p |
Gene: SACE_0751: SSU ribosomal protein S18p |
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SSU ribosomal protein S18p |
| rpmF2 |
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Gene: PPA2162: LSU ribosomal protein L32p |
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LSU ribosomal protein L32p |
| CRON 2. | ||||||||||
| znuA2 |
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Gene: Namu_1071: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Frankia sp. EAN1pec Site: position = -25 score = 5.83885 sequence = ATCGACAACCGTTTTCATT Gene: Franean1_7253: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Zinc ABC transporter, periplasmic-binding protein ZnuA |
| Franean1_7254 |
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Gene: Franean1_7254: ABC-type uncharacterized transport system, duplicated ATPase component |
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ABC-type uncharacterized transport system, duplicated ATPase component |
| Franean1_7255 |
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Gene: Franean1_7255: ABC-type Mn2+/Zn2+ transport systems, permease components |
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ABC-type Mn2+/Zn2+ transport systems, permease components |
| Franean1_7256 |
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Gene: Franean1_7256: ABC-type Mn2+/Zn2+ transport systems, permease components |
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ABC-type Mn2+/Zn2+ transport systems, permease components |
| Namu_1072 |
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Nakamurella multipartita DSM 44233 Site: position = -27 score = 5.48021 sequence = AACGAGAACCGTTCTCAGT Gene: Namu_1072: Quinoprotein amine dehydrogenase, beta chain-like |
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Quinoprotein amine dehydrogenase, beta chain-like |
| Namu_1070 |
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Gene: Namu_1070: Quinoprotein amine dehydrogenase, beta chain-like |
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Quinoprotein amine dehydrogenase, beta chain-like |
| CRON 3. | ||||||||||
| TIGR03773 |
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Actinosynnema mirum DSM 43827 Site: position = -60 score = 5.50103 sequence = ATTGAAAATGATTGTCCTT Gene: Amir_4776: Conserved hypothetical protein CHP03773, ABC transporter-like |
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Propionibacterium acnes KPA171202 Site: position = -48 score = 5.73345 sequence = ATCGATAACCGTTCTCATT Gene: PPA1500: Conserved hypothetical protein CHP03773, ABC transporter-like |
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Conserved hypothetical protein CHP03773, ABC transporter-like |
| znuA3 |
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Actinosynnema mirum DSM 43827 Site: position = -78 score = 5.90179 sequence = ATTGAAAACGGTTGTCGTT Gene: Amir_4768: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Gene: PPA1501: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Zinc ABC transporter, periplasmic-binding protein ZnuA |
| PPA1502 |
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Gene: PPA1502: Surface-anchored repeat, actinobacteria |
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Surface-anchored repeat, actinobacteria |
| znuC3 |
Gene: Amir_4770: Zinc ABC transporter, ATP-binding protein ZnuC |
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Gene: PPA1503: Zinc ABC transporter, ATP-binding protein ZnuC |
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Zinc ABC transporter, ATP-binding protein ZnuC |
| znuB3 |
Gene: Amir_4771: Zinc ABC transporter, inner membrane permease protein ZnuB |
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Gene: PPA1504: Zinc ABC transporter, inner membrane permease protein ZnuB |
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Zinc ABC transporter, inner membrane permease protein ZnuB |
| Amir_4769 |
Gene: Amir_4769: hypothetical protein |
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hypothetical protein |
| CRON 4. | ||||||||||
| Amir_3101 |
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Actinosynnema mirum DSM 43827 Site: position = -65 score = 5.71153 sequence = GTTGAAAACCGTTGTCATT Gene: Amir_3101: Surface-anchored repeat, actinobacteria |
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Surface-anchored repeat, actinobacteria |
| Amir_3100 |
Gene: Amir_3100: Surface-anchored repeat, actinobacteria |
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Surface-anchored repeat, actinobacteria |
| CRON 5. | ||||||||||
| znuA |
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Actinosynnema mirum DSM 43827 Site: position = -49 score = 5.19824 sequence = CTCGACAACGGTTACCATT Gene: Amir_0352: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -68 score = 5.24099 sequence = CATGACAACGGTTTCCGTT Gene: SACE_0453: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Saccharomonospora viridis DSM 43017 Site: position = -89 score = 5.20491 sequence = ATCGAAAATCATTTCCAAT Gene: Svir_35300: Zinc ABC transporter, periplasmic-binding protein ZnuA |
Gene: Namu_4923: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Gene: Francci3_2479: Zinc ABC transporter, periplasmic-binding protein ZnuA |
Gene: Acel_2086: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Propionibacterium acnes KPA171202 Site: position = -45 score = 5.13725 sequence = TACGACAATGGTTATCACT Gene: PPA0617: Zinc ABC transporter, periplasmic-binding protein ZnuA |
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Nocardioides sp. JS614 Site: position = -29 score = 5.31096 sequence = TTTGACAATCATTCTCAAT Site: position = -7 score = 4.45756 sequence = GCTGAGAATGATTCTCATG Gene: Noca_1937: Zinc ABC transporter, periplasmic-binding protein ZnuA |
Zinc ABC transporter, periplasmic-binding protein ZnuA |
| znuC |
Gene: Amir_0353: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: SACE_0452: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: Svir_35290: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: Namu_4922: Zinc ABC transporter, ATP-binding protein ZnuC |
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Gene: Francci3_2478: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: Acel_2087: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: PPA0616: Zinc ABC transporter, ATP-binding protein ZnuC |
Gene: Noca_1936: Zinc ABC transporter, ATP-binding protein ZnuC |
Zinc ABC transporter, ATP-binding protein ZnuC |
| znuB |
Gene: Amir_0354: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: SACE_0451: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: Svir_35280: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: Namu_4921: Zinc ABC transporter, inner membrane permease protein ZnuB |
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2
Frankia sp. CcI3 Gene: Francci3_2477: Zinc ABC transporter, inner membrane permease protein ZnuB Gene: Francci3_2476: Zinc ABC transporter, inner membrane permease protein ZnuB |
2
Acidothermus cellulolyticus 11B Gene: Acel_2088: Zinc ABC transporter, inner membrane permease protein ZnuB Gene: Acel_2089: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: PPA0615: Zinc ABC transporter, inner membrane permease protein ZnuB |
Gene: Noca_1935: Zinc ABC transporter, inner membrane permease protein ZnuB |
Zinc ABC transporter, inner membrane permease protein ZnuB |
| zur |
*2
Actinosynnema mirum DSM 43827 Gene: Amir_1261: Zinc homeostasis transcriptional regulator Zur, Fur family Site: position = -55 score = 5.54674 sequence = ATTGAAAACGATTGTCTTT Gene: Amir_4413: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: SACE_1498: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: Svir_13670: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: Namu_0066: Zinc homeostasis transcriptional regulator Zur, Fur family |
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Frankia sp. EAN1pec Site: position = -134 score = 5.12123 sequence = AATGAAAACCGATGTCAAC Gene: Franean1_7263: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: Francci3_0061: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: Acel_2085: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: PPA0948: Zinc homeostasis transcriptional regulator Zur, Fur family |
Gene: Noca_1934: Zinc homeostasis transcriptional regulator Zur, Fur family |
Zinc homeostasis transcriptional regulator Zur, Fur family |
| CRON 6. | ||||||||||
| yciC |
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Actinosynnema mirum DSM 43827 Site: position = -52 score = 5.53543 sequence = AATGACAATCGTTTCCGTT Gene: Amir_4416: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -65 score = 5.41889 sequence = AACGACATCCGTTTTCATT Site: position = -11 score = 5.04579 sequence = AATGAAAACCGTTGCCGAC Gene: SACE_0755: Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
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Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family |
| rpmE2 |
Gene: Amir_4415: LSU ribosomal protein L31p |
Gene: SACE_0756: LSU ribosomal protein L31p |
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Propionibacterium acnes KPA171202 Site: position = -72 score = 5.12638 sequence = TATGAGAATCATTATCATA Gene: PPA2157: LSU ribosomal protein L31p |
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LSU ribosomal protein L31p |
| rpmF2 |
Gene: Amir_4414: LSU ribosomal protein L32p |
Gene: SACE_0757: LSU ribosomal protein L32p |
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LSU ribosomal protein L32p |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |