Regulon of Rex in Frankia sp. CcI3

Properties
Regulator type:	Transcription factor
TF locus tag:	Francci3_0484
Regulator family:	Rex
Regulation mode:	repressor
Biological process:	Energy metabolism
Effector:	NADH
Regulog:	Rex - Frankineae/Propionibacterineae/Pseudonocardiaceae
Statistics of regulated genes:
- Genes	21
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 26 sites [see more]

Member of regulog collections

By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
By trascription factor - Rex
By TF family - Rex
By effector - NADH
By pathway - Energy metabolism

Regulated operons
	Locus Tag	Name	Function
Position: -92 Score: 5.5 Sequence: TCGTGAAGAATTTCACGA Locus tag: Francci3_0537 Name: COG0644 Funciton: Putative NAD-dependent reductase, COG0644 Locus tag: Francci3_0538 Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) Locus tag: Francci3_0539 Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) Locus tag: Francci3_0540 Name: nuoC Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) Locus tag: Francci3_0541 Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) Locus tag: Francci3_0542 Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) Locus tag: Francci3_0543 Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) Locus tag: Francci3_0544 Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) Locus tag: Francci3_0545 Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) Locus tag: Francci3_0546 Name: nuoI Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) Locus tag: Francci3_0547 Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) Locus tag: Francci3_0548 Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) Locus tag: Francci3_0549 Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) Locus tag: Francci3_0550 Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) Locus tag: Francci3_0551 Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) Locus tag: Francci3_0552 Name: COG0142 Funciton: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
	Francci3_0537	COG0644	Putative NAD-dependent reductase, COG0644
	Francci3_0538	nuoA	NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
	Francci3_0539	nuoB	NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
	Francci3_0540	nuoC	NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
	Francci3_0541	nuoD	NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
	Francci3_0542	nuoE	NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
	Francci3_0543	nuoF	NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
	Francci3_0544	nuoG	NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
	Francci3_0545	nuoH	NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
	Francci3_0546	nuoI	NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
	Francci3_0547	nuoJ	NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
	Francci3_0548	nuoK	NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
	Francci3_0549	nuoL	NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
	Francci3_0550	nuoM	NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
	Francci3_0551	nuoN	NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
	Francci3_0552	COG0142	Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
Position: -159 Score: 5.8 Sequence: TCGTGAATCCCTTCACGA Locus tag: Francci3_0484 Name: rex Funciton: Redox-sensitive transcriptional regulator Rex Locus tag: Francci3_0485 Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70) Locus tag: Francci3_0486 Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61) Locus tag: Francci3_0487 Name: hemD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75) Locus tag: Francci3_0488 Name: hemB Funciton: Porphobilinogen synthase (EC 4.2.1.24)
	Francci3_0484	rex	Redox-sensitive transcriptional regulator Rex
	Francci3_0485	hemA	Glutamyl-tRNA reductase (EC 1.2.1.70)
	Francci3_0486	hemC	Porphobilinogen deaminase (EC 2.5.1.61)
	Francci3_0487	hemD	Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
	Francci3_0488	hemB	Porphobilinogen synthase (EC 4.2.1.24)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Rex in Frankia sp. CcI3

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --