Regulon of Rex in Frankia sp. EAN1pec
| Regulator type: | Transcription factor |
| TF locus tag: | Franean1_6132 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Frankineae/Propionibacterineae/Pseudonocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -85
Score: 5.5 Sequence: TCGTGAAGAATTTCACGA
Locus tag: Franean1_6095
Name: COG0644 Funciton: Putative NAD-dependent reductase, COG0644
Locus tag: Franean1_6094
Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Franean1_6093
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Franean1_6092
Name: nuoC Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: Franean1_6091
Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: Franean1_6090
Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: Franean1_6089
Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: Franean1_6088
Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: Franean1_6087
Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Franean1_6086
Name: nuoI Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: Franean1_6085
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Franean1_6084
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: Franean1_6083
Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: Franean1_6082
Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: Franean1_6081
Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Locus tag: Franean1_6080
Name: COG0142 Funciton: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
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COG0644
|
Putative NAD-dependent reductase, COG0644
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nuoA
|
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
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nuoB
|
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
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nuoC
|
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
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nuoD
|
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
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nuoE
|
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
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nuoF
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NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
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nuoG
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NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
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nuoH
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NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
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nuoI
|
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
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nuoJ
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
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nuoK
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NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
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nuoL
|
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
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nuoM
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NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
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nuoN
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NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
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COG0142
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Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
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Position: -226
Score: 5.9 Sequence: TCGTGAATACCTTCACGA
Locus tag: Franean1_6132
Name: rex Funciton: Redox-sensitive transcriptional regulator Rex
Locus tag: Franean1_6131
Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: Franean1_6130
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Franean1_6129
Name: hemD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Franean1_6128
Name: hemB Funciton: Porphobilinogen synthase (EC 4.2.1.24) |
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rex
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Redox-sensitive transcriptional regulator Rex
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hemA
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Glutamyl-tRNA reductase (EC 1.2.1.70)
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hemC
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Porphobilinogen deaminase (EC 2.5.1.61)
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hemD
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Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
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hemB
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Porphobilinogen synthase (EC 4.2.1.24)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |