Regulon of Rex in Nocardioides sp. JS614
| Regulator type: | Transcription factor |
| TF locus tag: | Noca_0493 |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Regulog: | Rex - Frankineae/Propionibacterineae/Pseudonocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 21 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -100
Score: 5.3 Sequence: TCGTGAATGCGTTCACTT
Locus tag: Noca_1713
Name: whiB Funciton: WhiB-family transcriptional regulator involved in differentiation and sporulation |
|||
|
whiB
|
WhiB-family transcriptional regulator involved in differentiation and sporulation
|
||
|
Position: -118
Score: 4.4 Sequence: TTGTTCTCCTGTTCACAA
Locus tag: Noca_0493
Name: rex Funciton: Redox-sensitive transcriptional regulator Rex
Locus tag: Noca_0494
Name: hemA Funciton: Glutamyl-tRNA reductase (EC 1.2.1.70)
Locus tag: Noca_0495
Name: hemC Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Noca_0496
Name: hemD Funciton: Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Noca_0497
Name: hemB Funciton: Porphobilinogen synthase (EC 4.2.1.24) |
|||
|
rex
|
Redox-sensitive transcriptional regulator Rex
|
||
|
hemA
|
Glutamyl-tRNA reductase (EC 1.2.1.70)
|
||
|
hemC
|
Porphobilinogen deaminase (EC 2.5.1.61)
|
||
|
hemD
|
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) / Uroporphyrinogen-III synthase (EC 4.2.1.75)
|
||
|
hemB
|
Porphobilinogen synthase (EC 4.2.1.24)
|
||
|
Position: -87
Score: 5.6 Sequence: TCGTGATTGTGTTCACAA
Locus tag: Noca_0520
Name: nuoA Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: Noca_0521
Name: nuoB Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: Noca_0522
Name: nuoC Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: Noca_0523
Name: nuoD Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: Noca_0524
Name: nuoE Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: Noca_0525
Name: nuoF Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: Noca_0526
Name: nuoG Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: Noca_0527
Name: nuoH Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: Noca_0528
Name: nuoI Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: Noca_0529
Name: nuoJ Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: Noca_0530
Name: nuoK Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: Noca_0531
Name: nuoL Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: Noca_0532
Name: nuoM Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: Noca_0533
Name: nuoN Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Locus tag: Noca_0534
Name: COG0142 Funciton: Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) |
|||
|
nuoA
|
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
|
||
|
nuoB
|
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
|
||
|
nuoC
|
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
|
||
|
nuoD
|
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
|
||
|
nuoE
|
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
|
||
|
nuoF
|
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
|
||
|
nuoG
|
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
|
||
|
nuoH
|
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
|
||
|
nuoI
|
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
|
||
|
nuoJ
|
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
|
||
|
nuoK
|
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
|
||
|
nuoL
|
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
|
||
|
nuoM
|
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
|
||
|
nuoN
|
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
|
||
|
COG0142
|
Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |