Regulon of SamR in Xanthomonas campestris pv. campestris str. ATCC 33913
| Regulator type: | Transcription factor |
| TF locus tag: | XCC1513 |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylmethionine |
| Regulog: | SamR - Xanthomonadales |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - SahR/SamR
- By TF family - ArsR
- By effector - S-adenosylmethionine
- By pathway - Methionine metabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -57
Score: 5.5 Sequence: ATGCATTCATCGCGATGAAGCGAT
Locus tag: XCC0739
Name: metF2 Funciton: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
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metF2
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5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
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Position: -33
Score: 6.7 Sequence: ATCTTTTCATCCGAATTAAGGGAT
Locus tag: XCC0761
Name: metK Funciton: S-adenosylmethionine synthetase (EC 2.5.1.6) |
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metK
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S-adenosylmethionine synthetase (EC 2.5.1.6)
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Position: 29
Score: 6.3 Sequence: ATCTCCATATCGCGATATAGAGAT
Locus tag: XCC1513
Name: samR Funciton: Transcriptional regulator of methionine metabolism, ArsR family
Locus tag: XCC1512
Name: metH2 Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
Locus tag: XCC1511
Name: metH1 Funciton: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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samR
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Transcriptional regulator of methionine metabolism, ArsR family
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metH2
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
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metH1
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13)
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Position: -248
Score: 6.8 Sequence: ATCTTTCCATCCGCATGAAGAGAT
Locus tag: XCC2857
Name: metX2 Funciton: Homoserine O-acetyltransferase (EC 2.3.1.31)
Locus tag: XCC2856
Name: metB Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: XCC2855
Name: hom Funciton: Homoserine dehydrogenase (EC 1.1.1.3) |
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metX2
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Homoserine O-acetyltransferase (EC 2.3.1.31)
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metB
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Cystathionine gamma-synthase (EC 2.5.1.48)
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hom
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Homoserine dehydrogenase (EC 1.1.1.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |