Regulog SamR - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | ArsR |
| Regulation mode: | repressor |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylmethionine |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - SahR/SamR
- By TF family - ArsR
- By effector - S-adenosylmethionine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Stenotrophomonas maltophilia K279a | 8 | 4 |
| Xanthomonas axonopodis pv. citri str. 306 | 8 | 4 |
| Xanthomonas campestris pv. campestris str. ATCC 33913 | 8 | 4 |
| Xylella fastidiosa 9a5c | 6 | 5 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| metE |
|
|
|
*
Xylella fastidiosa 9a5c Site: position = -408 score = 5.67601 sequence = ATCGCTATATCTGGATGAAGCGAT Gene: XF2272: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 2. | |||||
| metF2 |
*
Stenotrophomonas maltophilia K279a Site: position = -58 score = 4.81521 sequence = AAGCATCCATCTTGATGAAGAGAT Gene: Smlt0767: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -57 score = 5.46009 sequence = ATGCATTCATCGCGATGAAGCGAT Gene: XAC0791: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -57 score = 5.46009 sequence = ATGCATTCATCGCGATGAAGCGAT Gene: XCC0739: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
*
Xylella fastidiosa 9a5c Site: position = -55 score = 5.02594 sequence = TCACATTCATCCGGATGAAGAGAT Gene: XF1121: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CRON 3. | |||||
| metX2 |
*
Stenotrophomonas maltophilia K279a Site: position = -252 score = 6.21311 sequence = ATCGCTTTATCCGCATGAAGGGAT Gene: Smlt3635: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -247 score = 6.84174 sequence = ATCTTTCCATCCGCATGAAGAGAT Gene: XAC3040: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -248 score = 6.84174 sequence = ATCTTTCCATCCGCATGAAGAGAT Gene: XCC2857: Homoserine O-acetyltransferase (EC 2.3.1.31) |
*
Xylella fastidiosa 9a5c Site: position = -249 score = 6.6664 sequence = ATCTTTCTATCCGTATGGAGAGAT Gene: XF0863: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
| metB |
Gene: Smlt3634: Cystathionine gamma-synthase (EC 2.5.1.48) |
Gene: XAC3039: Cystathionine gamma-synthase (EC 2.5.1.48) |
Gene: XCC2856: Cystathionine gamma-synthase (EC 2.5.1.48) |
Gene: XF0864: Cystathionine gamma-synthase (EC 2.5.1.48) |
Cystathionine gamma-synthase (EC 2.5.1.48) |
| hom |
Gene: Smlt3633: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: XAC3038: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: XCC2855: Homoserine dehydrogenase (EC 1.1.1.3) |
|
Homoserine dehydrogenase (EC 1.1.1.3) |
| CRON 4. | |||||
| metK |
*
Stenotrophomonas maltophilia K279a Site: position = -34 score = 6.46964 sequence = ATCTTTCCATCCGAATCAAGGGAT Gene: Smlt0780: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -33 score = 6.65911 sequence = ATCTTTTCATCCGAATTAAGGGAT Gene: XAC0813: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = -33 score = 6.65911 sequence = ATCTTTTCATCCGAATTAAGGGAT Gene: XCC0761: S-adenosylmethionine synthetase (EC 2.5.1.6) |
*
Xylella fastidiosa 9a5c Site: position = -33 score = 6.52762 sequence = ATCTTTTCATTCGAATTAAGGGAT Gene: XF0392: S-adenosylmethionine synthetase (EC 2.5.1.6) |
S-adenosylmethionine synthetase (EC 2.5.1.6) |
| CRON 5. | |||||
| samR |
*
Stenotrophomonas maltophilia K279a Site: position = -28 score = 6.02334 sequence = ATCTCTATATCGCGATAGGTAGAT Gene: Smlt3175: Transcriptional regulator of methionine metabolism, ArsR family |
*
Xanthomonas axonopodis pv. citri str. 306 Site: position = -28 score = 6.2964 sequence = ATCTCCATATCGCGATATAGAGAT Gene: XAC1561: Transcriptional regulator of methionine metabolism, ArsR family |
*
Xanthomonas campestris pv. campestris str. ATCC 33913 Site: position = 29 score = 6.2964 sequence = ATCTCCATATCGCGATATAGAGAT Gene: XCC1513: Transcriptional regulator of methionine metabolism, ArsR family |
*
Xylella fastidiosa 9a5c Site: position = -28 score = 5.84316 sequence = ATCTCTGTATCGAGATATAGACAT Gene: XF1617: Transcriptional regulator of methionine metabolism, ArsR family |
Transcriptional regulator of methionine metabolism, ArsR family |
| metH2 |
Gene: Smlt3176: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: XAC1560: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: XCC1512: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
|
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| metH1 |
Gene: Smlt3177: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: XAC1559: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: XCC1511: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
|
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |