Regulon of CblR in Thermococcus kodakaraensis KOD1
| Regulator type: | Transcription factor |
| TF locus tag: | |
| Regulator family: | |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | |
| Regulog: | CblR - Thermococcales |
| Statistics of regulated genes: | |
| - Genes | 20 |
| - Operons | 11 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermococcales
- By trascription factor - CblR
- By pathway - Cobalamin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -87
Score: 5.5 Sequence: CTGGACAAAATATCCAA
Locus tag: TK0328
Name: mutB_C Funciton: B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2) |
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mutB_C
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B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2)
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Position: -89
Score: 5.6 Sequence: ATGGACAATTTATCCAA
Locus tag: TK1149
Name: mutB_N Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2), alpha subunit, N-terminal |
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mutB_N
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Methylmalonyl-CoA mutase (EC 5.4.99.2), alpha subunit, N-terminal
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Position: -28
Score: 5.1 Sequence: CTGGAGATTATGTCCAA
Locus tag: TK2130
Name: btuR Funciton: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
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btuR
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Cob(I)alamin adenosyltransferase (EC 2.5.1.17)
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Position: -198
Score: 5 Sequence: ATGGATAATTCGTCCAG
Locus tag: TK1736
Name: nrdJ Funciton: Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing |
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nrdJ
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Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) @ intein-containing
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Position: -20
Score: 5.1 Sequence: CTGGACAAAAAGTCCAG
Locus tag: TK2209
Name: btuC Funciton: Vitamin B12 ABC transporter, permease component BtuC
Locus tag: TK2208
Name: btuD Funciton: Vitamin B12 ABC transporter, ATPase component BtuD |
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btuC
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Vitamin B12 ABC transporter, permease component BtuC
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btuD
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Vitamin B12 ABC transporter, ATPase component BtuD
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Position: -42
Score: 5.1 Sequence: ATGGATAAAAACTCCAT
Locus tag: TK0862
Name: null Funciton: hypothetical protein
Locus tag: TK0861
Name: null Funciton: conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71
Locus tag: TK0860
Name: null Funciton: hypothetical protein
Locus tag: TK0859
Name: null Funciton: hypothetical protein
Locus tag: TK0858
Name: cobZ Funciton: Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)
Locus tag: TK0857
Name: cobS Funciton: Cobalamin-5-phosphate synthase
Locus tag: TK0856
Name: cobY Funciton: Adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62) |
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hypothetical protein
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conserved hypothetical protein [Pyrococcus horikoshii]; COG2102: Predicted ATPases of PP-loop superfamily; IPR002761: Domain of unknown function DUF71
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hypothetical protein
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hypothetical protein
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cobZ
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Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73)
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cobS
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Cobalamin-5-phosphate synthase
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cobY
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Adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62)
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Position: -127
Score: 5.9 Sequence: TTGGATAATTTATCCAA
Position: -35
Score: 5.8 Sequence: TTGGATAAATTATCCAG
Locus tag: TK2298
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: TK2299
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -73
Score: 4.6 Sequence: TTGGCCGTTTTATCCAA
Position: -26
Score: 5 Sequence: CCGGACAAATAATCCAG
Locus tag: TK0865
Name: btuF Funciton: Vitamin B12 ABC transporter, B12-binding component BtuF |
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btuF
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Vitamin B12 ABC transporter, B12-binding component BtuF
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Position: -27
Score: 5 Sequence: CTGGATAAAAAGTCCAC
Locus tag: TK0853
Name: cobT Funciton: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
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cobT
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Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21)
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Position: -27
Score: 5 Sequence: CTGGATGATTAATCCAG
Locus tag: TK0329
Name: meaB Funciton: GTP-dependent assembly of methylmalonyl-CoA mutase
Locus tag: TK0330
Name: mceE Funciton: Methylmalonyl-CoA epimerase (EC 5.1.99.1) |
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meaB
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GTP-dependent assembly of methylmalonyl-CoA mutase
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mceE
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Methylmalonyl-CoA epimerase (EC 5.1.99.1)
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Position: -69
Score: 5.2 Sequence: ATGGATATAAAATCCAT
Locus tag: TK1880
Name: sucD Funciton: Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) |
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sucD
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Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |