Regulon of LexA in Actinosynnema mirum DSM 43827

Properties
Regulator type:	Transcription factor
TF locus tag:	Amir_3974, Amir_1434
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Frankineae/Propionibacterineae/Pseudonocardiaceae
Statistics of regulated genes:
- Genes	12
- Operons	8
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 68 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -157 Score: 3.8 Sequence: ACGACCTCGTGCTCGA Locus tag: Amir_3974 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	Amir_3974	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -87 Score: 4.2 Sequence: TCGACCACCCGGTCGT Position: -26 Score: 5.8 Sequence: TCGAACAGACGTTCGA Locus tag: Amir_5585 Name: dprA Funciton: DNA protecting protein DprA
	Amir_5585	dprA	DNA protecting protein DprA
Position: -58 Score: 5 Sequence: TCGAACTGGTGTTCGC Locus tag: Amir_1692 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: Amir_1691 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: Amir_1690 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	Amir_1692	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	Amir_1691	ruvA	Holliday junction DNA helicase RuvA
	Amir_1690	ruvB	Holliday junction DNA helicase RuvB
Position: -184 Score: 5.6 Sequence: TCGAACAACCGTTCGA Position: -168 Score: 5.3 Sequence: TCGAACGCCCGTGCGA Position: -103 Score: 5.6 Sequence: TCGAACAGGTGTTTGA Locus tag: Amir_1434 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	Amir_1434	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)
Position: -100 Score: 5.5 Sequence: TCGAACGCGTGTTTGA Locus tag: Amir_2280 Name: gyrB Funciton: Topoisomerase IV, subunit B (EC 5.99.1.-) Locus tag: Amir_2281 Name: gyrA Funciton: Topoisomerase IV, subunit A (EC 5.99.1.-)
	Amir_2280	gyrB	Topoisomerase IV, subunit B (EC 5.99.1.-)
	Amir_2281	gyrA	Topoisomerase IV, subunit A (EC 5.99.1.-)
Position: -38 Score: 5.6 Sequence: TCGAACATGTGTTCGG Locus tag: Amir_5483 Name: uvrA Funciton: Excinuclease ABC, subunit A
	Amir_5483	uvrA	Excinuclease ABC, subunit A
Position: -264 Score: 4.2 Sequence: CCGACCAGGCGTTGGA Position: -151 Score: 5.7 Sequence: TCGAACACCTGTTCGG Locus tag: Amir_1419 Name: recA Funciton: Recombinase A Locus tag: Amir_1420 Name: recX Funciton: Regulatory protein RecX
	Amir_1419	recA	Recombinase A
	Amir_1420	recX	Regulatory protein RecX
Position: 16 Score: 4.1 Sequence: ACGAATCCGCGTTCGG Locus tag: Amir_0958 Name: hsdR Funciton: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)
	Amir_0958	hsdR	Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of LexA in Actinosynnema mirum DSM 43827

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --