Regulon of LexA in Frankia sp. EAN1pec
| Regulator type: | Transcription factor |
| TF locus tag: | Franean1_1232 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Frankineae/Propionibacterineae/Pseudonocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 13 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -75
Score: 3.7 Sequence: CCGTTCGGGTGTTCTG
Locus tag: Franean1_3452
Name: PF02720 Funciton: HNH endonuclease |
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PF02720
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HNH endonuclease
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Position: -22
Score: 5.1 Sequence: TCGAACGTACGATCGA
Locus tag: Franean1_5987
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -137
Score: 5.8 Sequence: TCGAACATATGTTCGA
Locus tag: Franean1_7308
Name: dnaB Funciton: Replicative DNA helicase (EC 3.6.1.-) |
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dnaB
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Replicative DNA helicase (EC 3.6.1.-)
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Position: -142
Score: 5.2 Sequence: TCGAACGAATGTTCGG
Locus tag: Franean1_6708
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -298
Score: 4.9 Sequence: TCGAACGCCTGAGCGA
Position: -244
Score: 5.4 Sequence: TCGAACAGACGTTTGA
Locus tag: Franean1_1232
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -138
Score: 5.5 Sequence: TCGAACGGATGTTCGG
Locus tag: Franean1_1219
Name: recA Funciton: Recombinase A
Locus tag: Franean1_1220
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -154
Score: 4.1 Sequence: CCGACCGTGCCTTCGA
Locus tag: Franean1_1158
Name: dprA Funciton: DNA protecting protein DprA
Locus tag: Franean1_1159
Name: xerC Funciton: Site-specific DNA-tyrosine recombinase, XerC |
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dprA
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DNA protecting protein DprA
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xerC
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Site-specific DNA-tyrosine recombinase, XerC
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Position: -227
Score: 5.4 Sequence: TCGAACGCGCGTTTGA
Locus tag: Franean1_2057
Name: uvrA Funciton: Excinuclease ABC, subunit A |
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uvrA
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Excinuclease ABC, subunit A
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Position: -37
Score: 5.4 Sequence: TCGAACGGATGTTCGT
Locus tag: Franean1_5146
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Franean1_5145
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: Franean1_5144
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |