Regulon of LexA in Frankia sp. CcI3
| Regulator type: | Transcription factor |
| TF locus tag: | Francci3_3510 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Frankineae/Propionibacterineae/Pseudonocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 8 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
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Position: -267
Score: 5 Sequence: TCGAACCTTCGTTCGA
Position: -251
Score: 5.3 Sequence: TCGAACGCGTGGTCGA
Position: -198
Score: 5.4 Sequence: TCGAACAGACGTTTGA
Locus tag: Francci3_3510
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Position: -22
Score: 4.9 Sequence: TCGAACGTACGATCGG
Locus tag: Francci3_0647
Name: uvrD Funciton: ATP-dependent DNA helicase II |
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uvrD
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ATP-dependent DNA helicase II
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Position: -197
Score: 5 Sequence: CCGAACACATGGTCGA
Position: 28
Score: 5.6 Sequence: TCGAACACATGTTCGG
Locus tag: Francci3_0067
Name: PF02720 Funciton: HNH endonuclease |
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PF02720
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HNH endonuclease
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Position: -268
Score: 4.1 Sequence: CCGAGCGGGCATTCGA
Locus tag: Francci3_3584
Name: dprA Funciton: DNA protecting protein DprA
Locus tag: Francci3_3583
Name: xerC Funciton: Site-specific DNA-tyrosine recombinase, XerC |
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dprA
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DNA protecting protein DprA
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xerC
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Site-specific DNA-tyrosine recombinase, XerC
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Position: -139
Score: 5.4 Sequence: TCGAACGCATGTTCGT
Locus tag: Francci3_3525
Name: recA Funciton: Recombinase A
Locus tag: Francci3_3524
Name: recX Funciton: Regulatory protein RecX |
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recA
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Recombinase A
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recX
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Regulatory protein RecX
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Position: -50
Score: 5.3 Sequence: ACGAACATACGTTCGA
Locus tag: Francci3_4518
Name: dnaB Funciton: Replicative DNA helicase (EC 3.6.1.-) |
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dnaB
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Replicative DNA helicase (EC 3.6.1.-)
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Position: -233
Score: 3.7 Sequence: GAGAACGGCAGTACGA
Locus tag: Francci3_0194
Name: hsdR Funciton: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) |
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hsdR
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Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)
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Position: -40
Score: 4.5 Sequence: TCGAACGAATGTTCTT
Locus tag: Francci3_1369
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: Francci3_1370
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: Francci3_1371
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |