Regulon of IscR in Shewanella piezotolerans WP3
| Regulator type: | Transcription factor |
| TF locus tag: | swp_1693 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Regulog: | IscR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - IscR
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By pathway - Iron-sulfur cluster biogenesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -64
Score: 5.4 Sequence: TTACTTGAACAAAACGGTCAGGTAT
Locus tag: swp_3849
Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family |
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erpA
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ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
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Position: -90
Score: 5.2 Sequence: ATACTTGACCAAACCACTAGGTTAA
Position: -65
Score: 6.5 Sequence: ATACTTGACTAAATTACTCAGGTAT
Locus tag: swp_1693
Name: iscR Funciton: Iron-sulfur cluster regulator IscR
Locus tag: swp_1694
Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
Locus tag: swp_1695
Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU
Locus tag: swp_1697
Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly
Locus tag: swp_1698
Name: hscB Funciton: Chaperone protein HscB
Locus tag: swp_1699
Name: hscA Funciton: Chaperone protein HscA
Locus tag: swp_1700
Name: fdx Funciton: ferredoxin, 2Fe-2S type, ISC system |
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iscR
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Iron-sulfur cluster regulator IscR
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iscS
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Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
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iscU
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Iron-sulfur cluster assembly scaffold protein IscU
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iscA
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Iron binding protein IscA for iron-sulfur cluster assembly
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hscB
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Chaperone protein HscB
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hscA
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Chaperone protein HscA
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fdx
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ferredoxin, 2Fe-2S type, ISC system
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Position: -48
Score: 4.5 Sequence: AATTCTTACTAAAACACTCAGGTTT
Locus tag: swp_4841
Name: nfuA Funciton: NfuA Fe-S protein maturation |
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nfuA
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NfuA Fe-S protein maturation
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Position: -88
Score: 5.5 Sequence: TTACCCGAGCATTTTACTCAACTAA
Locus tag: swp_0412
Name: dnrN Funciton: Nitric oxide-dependent regulator DnrN or NorA |
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dnrN
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Nitric oxide-dependent regulator DnrN or NorA
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Position: -28
Score: 4.8 Sequence: ATAACCCAGTGGCTTACTAAGGTAT
Locus tag: swp_2171
Name: ygbA Funciton: hypothetical protein involved in nitrosative stress |
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ygbA
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hypothetical protein involved in nitrosative stress
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |