Regulon of IscR in Shewanella amazonensis SB2B
| Regulator type: | Transcription factor |
| TF locus tag: | Sama_1292 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Regulog: | IscR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 11 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - IscR
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By pathway - Iron-sulfur cluster biogenesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -64
Score: 5.8 Sequence: ATACTTGAACAAAATAGTCAGGTAA
Locus tag: Sama_0843
Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family |
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erpA
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ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
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Position: -87
Score: 4.8 Sequence: TTAACCCAGCAAAATACTCAAGTTT
Locus tag: Sama_3236
Name: dnrN Funciton: Nitric oxide-dependent regulator DnrN or NorA |
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dnrN
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Nitric oxide-dependent regulator DnrN or NorA
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Position: -44
Score: 4.7 Sequence: AATTCTTAGTAATTTACTCAGGTTT
Locus tag: Sama_3502
Name: nfuA Funciton: NfuA Fe-S protein maturation |
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nfuA
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NfuA Fe-S protein maturation
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Position: -91
Score: 5.6 Sequence: ATACTTGAGTAAATTAGTTGGTTTT
Position: -66
Score: 6.5 Sequence: ATAGTTGACTAAATTACTCAGGTAT
Locus tag: Sama_1292
Name: iscR Funciton: Iron-sulfur cluster regulator IscR
Locus tag: Sama_1293
Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
Locus tag: Sama_1294
Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU
Locus tag: Sama_1295
Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly
Locus tag: Sama_1296
Name: hscB Funciton: Chaperone protein HscB
Locus tag: Sama_1297
Name: hscA Funciton: Chaperone protein HscA
Locus tag: Sama_1298
Name: fdx Funciton: ferredoxin, 2Fe-2S type, ISC system |
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iscR
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Iron-sulfur cluster regulator IscR
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iscS
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Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
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iscU
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Iron-sulfur cluster assembly scaffold protein IscU
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iscA
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Iron binding protein IscA for iron-sulfur cluster assembly
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hscB
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Chaperone protein HscB
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hscA
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Chaperone protein HscA
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fdx
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ferredoxin, 2Fe-2S type, ISC system
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Position: -30
Score: 5.1 Sequence: AAAACCAAGTAAATTACTTGGGTAT
Locus tag: Sama_3326
Name: ygbA Funciton: hypothetical protein involved in nitrosative stress |
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ygbA
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hypothetical protein involved in nitrosative stress
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |