Regulon of IscR in Shewanella oneidensis MR-1
| Regulator type: | Transcription factor |
| TF locus tag: | SO_2263 |
| Regulator family: | Rrf2 |
| Regulation mode: | repressor |
| Biological process: | Iron-sulfur cluster biogenesis |
| Effector: | Iron-sulfur cluster redox state |
| Regulog: | IscR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 5 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - IscR
- By TF family - Rrf2
- By effector - Iron-sulfur cluster redox state
- By pathway - Iron-sulfur cluster biogenesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -90
Score: 5.5 Sequence: ATACTTGAGTGATTTACTAGGTTTT
Position: -65
Score: 6.4 Sequence: ATACTTGACTGATTTACTCGGGTAT
Locus tag: SO_2263
Name: iscR Funciton: Iron-sulfur cluster regulator IscR
Locus tag: SO_2264
Name: iscS Funciton: Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
Locus tag: SO_2265
Name: iscU Funciton: Iron-sulfur cluster assembly scaffold protein IscU
Locus tag: SO_2266
Name: iscA Funciton: Iron binding protein IscA for iron-sulfur cluster assembly
Locus tag: SO_2267
Name: hscB Funciton: Chaperone protein HscB
Locus tag: SO_2268
Name: hscA Funciton: Chaperone protein HscA |
|||
|
iscR
|
Iron-sulfur cluster regulator IscR
|
||
|
iscS
|
Cysteine desulfurase (EC 2.8.1.7), IscS subfamily
|
||
|
iscU
|
Iron-sulfur cluster assembly scaffold protein IscU
|
||
|
iscA
|
Iron binding protein IscA for iron-sulfur cluster assembly
|
||
|
hscB
|
Chaperone protein HscB
|
||
|
hscA
|
Chaperone protein HscA
|
||
|
Position: -46
Score: 5 Sequence: AATTCTTACTAAAACACTCAGGTAT
Locus tag: SO_4619
Name: nfuA Funciton: NfuA Fe-S protein maturation |
|||
|
nfuA
|
NfuA Fe-S protein maturation
|
||
|
Position: -88
Score: 5.8 Sequence: ATACTTGAACAAAATAGTCAGGTAA
Locus tag: SO_1304
Name: erpA Funciton: ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family |
|||
|
erpA
|
ErpA, essential respiratory protein A / probable iron binding protein from the HesB_IscA_SufA family
|
||
|
Position: -167
Score: 5.1 Sequence: AATCTTGACTATTTTAGTCAAGATT
Locus tag: SO_4302
Name: dnrN Funciton: Nitric oxide-dependent regulator DnrN or NorA |
|||
|
dnrN
|
Nitric oxide-dependent regulator DnrN or NorA
|
||
|
Position: -29
Score: 4.1 Sequence: TTATCCGAGTCACAGACTAAGGTAT
Locus tag: SO_0324
Name: ygbA Funciton: hypothetical protein involved in nitrosative stress |
|||
|
ygbA
|
hypothetical protein involved in nitrosative stress
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |