Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of BenR in Corynebacterium efficiens YS-314

Properties
Regulator type: Transcription factor
TF locus tag: CE2309
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Benzoate degradation
Effector:
Regulog: BenR - Corynebacteriaceae
Statistics of regulated genes:
- Genes 8
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -108
Score: 5.3
Sequence: TTTAGGGGGTTCCCTAGT
Locus tag: CE2310
Name: benK
Funciton: Benzoate transporter, MFS family
benK
Benzoate transporter, MFS family

Position: -117
Score: 5.4
Sequence: ATTAGGGAAAAACCTAGG
Locus tag: CE2304
Name: catA
Funciton: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)
Locus tag: CE2303
Name: catB
Funciton: Muconate cycloisomerase (EC 5.5.1.1)
Locus tag: CE2302
Name: catC
Funciton: Muconolactone isomerase (EC 5.3.3.4)
catA
Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)
catB
Muconate cycloisomerase (EC 5.5.1.1)
catC
Muconolactone isomerase (EC 5.3.3.4)

Position: -174
Score: 5.4
Sequence: CCTAGGTTTTTCCCTAAT
Locus tag: CE2305
Name: benA
Funciton: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
Locus tag: CE2306
Name: benB
Funciton: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
Locus tag: CE2307
Name: benC
Funciton: benzoate dioxygenase, ferredoxin reductase component
Locus tag: CE2308
Name: benD
Funciton: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
benA
Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
benB
Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
benC
benzoate dioxygenase, ferredoxin reductase component
benD
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD