Regulog BenR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	activator (repressor)
Biological process:	Benzoate degradation
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - LuxR
By pathway - Benzoate degradation

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	8	3
Corynebacterium glutamicum ATCC 13032	9	3
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
benA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -174 score = 5.41977 sequence = CCTAGGTTTTTCCCTAAT Gene: CE2305: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)	* Corynebacterium glutamicum ATCC 13032 Site: position = -166 score = 5.48674 sequence = CCTAGGAATTCCCCTAAT Gene: cg2637: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10)
benB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2306: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)	Corynebacterium glutamicum ATCC 13032 Gene: cg2638: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10)
benC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2307: benzoate dioxygenase, ferredoxin reductase component	Corynebacterium glutamicum ATCC 13032 Gene: cg2639: benzoate dioxygenase, ferredoxin reductase component	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	benzoate dioxygenase, ferredoxin reductase component
benD	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2308: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)	Corynebacterium glutamicum ATCC 13032 Gene: cg2640: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)

CRON 2.
catA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -117 score = 5.41977 sequence = ATTAGGGAAAAACCTAGG Gene: CE2304: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)	* Corynebacterium glutamicum ATCC 13032 Site: position = -269 score = 5.48674 sequence = ATTAGGGGAATTCCTAGG Gene: cg2636: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1)
catB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2303: Muconate cycloisomerase (EC 5.5.1.1)	Corynebacterium glutamicum ATCC 13032 Gene: cg2635: Muconate cycloisomerase (EC 5.5.1.1)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Muconate cycloisomerase (EC 5.5.1.1)
catC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2302: Muconolactone isomerase (EC 5.3.3.4)	Corynebacterium glutamicum ATCC 13032 Gene: cg2634: Muconolactone isomerase (EC 5.3.3.4)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Muconolactone isomerase (EC 5.3.3.4)

CRON 3.
benK	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -108 score = 5.32195 sequence = TTTAGGGGGTTCCCTAGT Gene: CE2310: Benzoate transporter, MFS family	* Corynebacterium glutamicum ATCC 13032 Site: position = -108 score = 5.47884 sequence = TTTAGGGCTATCCCTAGT Gene: cg2642: Benzoate transporter, MFS family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Benzoate transporter, MFS family
benE	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE2502: Benzoate transporter	Corynebacterium glutamicum ATCC 13032 Gene: cg2643: Benzoate transporter	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Benzoate transporter

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog BenR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --