Regulog BenR - Corynebacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | LuxR |
| Regulation mode: | activator (repressor) |
| Biological process: | Benzoate degradation |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Corynebacteriaceae
- By TF family - LuxR
- By pathway - Benzoate degradation
| Genome | Genes | Operons |
|---|---|---|
| Corynebacterium amycolatum SK46 | ||
| Corynebacterium aurimucosum ATCC 700975 | ||
| Corynebacterium diphtheriae NCTC 13129 | ||
| Corynebacterium efficiens YS-314 | 8 | 3 |
| Corynebacterium glutamicum ATCC 13032 | 9 | 3 |
| Corynebacterium jeikeium K411 | ||
| Corynebacterium kroppenstedtii DSM 44385 | ||
| Corynebacterium urealyticum DSM 7109 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| benA |
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Corynebacterium efficiens YS-314 Site: position = -174 score = 5.41977 sequence = CCTAGGTTTTTCCCTAAT Gene: CE2305: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10) |
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Corynebacterium glutamicum ATCC 13032 Site: position = -166 score = 5.48674 sequence = CCTAGGAATTCCCCTAAT Gene: cg2637: Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10) |
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Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10) |
| benB |
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Gene: CE2306: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) |
Gene: cg2638: Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) |
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Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10) |
| benC |
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Gene: CE2307: benzoate dioxygenase, ferredoxin reductase component |
Gene: cg2639: benzoate dioxygenase, ferredoxin reductase component |
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benzoate dioxygenase, ferredoxin reductase component |
| benD |
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Gene: CE2308: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) |
Gene: cg2640: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) |
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1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25) |
| CRON 2. | |||||||||
| catA |
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Corynebacterium efficiens YS-314 Site: position = -117 score = 5.41977 sequence = ATTAGGGAAAAACCTAGG Gene: CE2304: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1) |
*
Corynebacterium glutamicum ATCC 13032 Site: position = -269 score = 5.48674 sequence = ATTAGGGGAATTCCTAGG Gene: cg2636: Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1) |
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Protocatechuate 3,4-dioxygenase beta subunit (EC 1.13.11.1) |
| catB |
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Gene: CE2303: Muconate cycloisomerase (EC 5.5.1.1) |
Gene: cg2635: Muconate cycloisomerase (EC 5.5.1.1) |
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Muconate cycloisomerase (EC 5.5.1.1) |
| catC |
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Gene: CE2302: Muconolactone isomerase (EC 5.3.3.4) |
Gene: cg2634: Muconolactone isomerase (EC 5.3.3.4) |
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Muconolactone isomerase (EC 5.3.3.4) |
| CRON 3. | |||||||||
| benK |
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Corynebacterium efficiens YS-314 Site: position = -108 score = 5.32195 sequence = TTTAGGGGGTTCCCTAGT Gene: CE2310: Benzoate transporter, MFS family |
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Corynebacterium glutamicum ATCC 13032 Site: position = -108 score = 5.47884 sequence = TTTAGGGCTATCCCTAGT Gene: cg2642: Benzoate transporter, MFS family |
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Benzoate transporter, MFS family |
| benE |
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Gene: CE2502: Benzoate transporter |
Gene: cg2643: Benzoate transporter |
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Benzoate transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |