Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NikR in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_3729
Regulator family: NikR
Regulation mode: repressor
Biological process: Nickel homeostasis
Effector: Nickel ion, (Ni2+)
Regulog: NikR - Shewanellaceae
Statistics of regulated genes:
- Genes 7
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -138
Score: 7.1
Sequence: GTAATACTTTTTTAAAATTCGTCATAC
Locus tag: Shal_1183
Name: omp_Ni
Funciton: Predicted outer membrane nickel transporter, TonB-dependent family
omp_Ni
Predicted outer membrane nickel transporter, TonB-dependent family

Position: -49
Score: 6.8
Sequence: GTGTGACGATTCGAAAAATAGTATTAC
Locus tag: Shal_3728
Name: nikA
Funciton: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Locus tag: Shal_3727
Name: nikB
Funciton: Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
Locus tag: Shal_3726
Name: nikC
Funciton: Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
Locus tag: Shal_3725
Name: nikD
Funciton: Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
Locus tag: Shal_3724
Name: nikE
Funciton: Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2)
nikA
Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
nikB
Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
nikC
Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
nikD
Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
nikE
Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2)

Position: -164
Score: 6.8
Sequence: GTAATACTATTTTTCGAATCGTCACAC
Locus tag: Shal_3729
Name: nikR
Funciton: Nickel responsive regulator NikR, CopG family
nikR
Nickel responsive regulator NikR, CopG family
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD