Regulon of NikR in Shewanella pealeana ATCC 700345
| Regulator type: | Transcription factor |
| TF locus tag: | Spea_3645 |
| Regulator family: | NikR |
| Regulation mode: | repressor |
| Biological process: | Nickel homeostasis |
| Effector: | Nickel ion, (Ni2+) |
| Regulog: | NikR - Shewanellaceae |
| Statistics of regulated genes: | |
| - Genes | 7 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Shewanellaceae
- By trascription factor - NikR
- By TF family - NikR
- By effector - Nickel ion, (Ni2+)
- By pathway - Nickel homeostasis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -96
Score: 7.1 Sequence: GTAATACTTTTTTAAAATTCGTCATAC
Locus tag: Spea_1138
Name: omp_Ni Funciton: Predicted outer membrane nickel transporter, TonB-dependent family |
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omp_Ni
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Predicted outer membrane nickel transporter, TonB-dependent family
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Position: -164
Score: 7.1 Sequence: GTAATACTATTTTTAGAATCGTCACAC
Locus tag: Spea_3645
Name: nikR Funciton: Nickel responsive regulator NikR, CopG family |
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nikR
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Nickel responsive regulator NikR, CopG family
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Position: -49
Score: 7.1 Sequence: GTGTGACGATTCTAAAAATAGTATTAC
Locus tag: Spea_3644
Name: nikA Funciton: Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
Locus tag: Spea_3643
Name: nikB Funciton: Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
Locus tag: Spea_3642
Name: nikC Funciton: Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
Locus tag: Spea_3641
Name: nikD Funciton: Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
Locus tag: Spea_3640
Name: nikE Funciton: Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2) |
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nikA
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Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3)
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nikB
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Nickel transport system permease protein nikB2 (TC 3.A.1.5.3)
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nikC
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Nickel transport system permease protein nikC2 (TC 3.A.1.5.3)
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nikD
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Nickel transport system ATP-binding protein nikD2 (TC 3.A.1.5.2)
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nikE
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Nickel transport system ATP-binding protein nikE2 (TC 3.A.1.5.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |