Regulon of RhaR in Streptomyces scabiei 87.22
| Regulator type: | Transcription factor |
| TF locus tag: | SCAB_9371 |
| Regulator family: | LacI |
| Regulation mode: | repressor |
| Biological process: | Rhamnose utilization |
| Effector: | Rhamnose |
| Regulog: | RhaR - Streptomycetaceae |
| Statistics of regulated genes: | |
| - Genes | 19 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Streptomycetaceae
- By TF family - LacI
- By effector - Rhamnose
- By pathway - Rhamnose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -235
Score: 6.2 Sequence: TGTCTGAAACGATTCAGCAA
Locus tag: SCAB_9431
Name: rhaG Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component
Locus tag: SCAB_9421
Name: rhaH Funciton: L-rhamnose ABC transporter, permease component 1
Locus tag: SCAB_9411
Name: rhaJ Funciton: L-rhamnose ABC transporter, permease component 2
Locus tag: SCAB_9401
Name: rhaF Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
Locus tag: SCAB_9391
Name: rhaM Funciton: L-rhamnose mutarotase
Locus tag: SCAB_9381
Name: rhaX Funciton: Putative rhamnoside hydrolase
Locus tag: SCAB_9371
Name: rhaR Funciton: Rhamnose utilization transcriptional regulator RhaR, LacI family |
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rhaG
|
L-rhamnose ABC transporter, duplicated ATP-binding component
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rhaH
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L-rhamnose ABC transporter, permease component 1
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rhaJ
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L-rhamnose ABC transporter, permease component 2
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rhaF
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L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
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rhaM
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L-rhamnose mutarotase
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rhaX
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Putative rhamnoside hydrolase
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rhaR
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Rhamnose utilization transcriptional regulator RhaR, LacI family
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Position: -43
Score: 6.2 Sequence: TTGCTGAATCGTTTCAGACA
Locus tag: SCAB_9441
Name: rhaI Funciton: L-rhamnose isomerase (EC 5.3.1.14)
Locus tag: SCAB_9451
Name: rhaEW Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: SCAB_9461
Name: rhaB Funciton: Rhamnulokinase (EC 2.7.1.5)
Locus tag: SCAB_9471
Name: lldE Funciton: L-lactate dehydrogenase, Fe-S oxidoreductase subunit
Locus tag: SCAB_9481
Name: lldF Funciton: L-lactate dehydrogenase, iron-sulfur cluster-binding subunit
Locus tag: SCAB_9491
Name: lldG Funciton: L-lactate dehydrogenase, hypothetical subunit |
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rhaI
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L-rhamnose isomerase (EC 5.3.1.14)
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rhaEW
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Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
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rhaB
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Rhamnulokinase (EC 2.7.1.5)
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lldE
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L-lactate dehydrogenase, Fe-S oxidoreductase subunit
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lldF
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L-lactate dehydrogenase, iron-sulfur cluster-binding subunit
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lldG
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L-lactate dehydrogenase, hypothetical subunit
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Position: -50
Score: 4.2 Sequence: TACTTGAAACGATTCACGGC
Locus tag: SCAB_74641
Name: rhiL Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: SCAB_74651
Name: rhiF Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: SCAB_74661
Name: rhiG Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: SCAB_74671
Name: SAV_6815 Funciton: hypothetical protein |
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rhiL
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Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
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rhiF
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Putatuve rhamnogalacturonides ABC transporter, permease component 1
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rhiG
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Putatuve rhamnogalacturonides ABC transporter, permease component 2
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SAV_6815
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hypothetical protein
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Position: -54
Score: 4.1 Sequence: GTGATGAAACGTTTTAATCC
Locus tag: SCAB_86701
Name: SCF41.28c Funciton: putative secreted protein
Locus tag: SCAB_86711
Name: null Funciton: putative exported rhamnosidase A |
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SCF41.28c
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putative secreted protein
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putative exported rhamnosidase A
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |