Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Shewanella halifaxensis HAW-EB4

Properties
Regulator type: Transcription factor
TF locus tag: Shal_0260
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Shewanellaceae
Statistics of regulated genes:
- Genes 18
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -45
Score: 4.9
Sequence: TACTGTATATACTGACAGGT
Position: -26
Score: 4.9
Sequence: TACTGTATAGAAAGACAGGG
Locus tag: Shal_0260
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Shal_0259
Name: sulA
Funciton: Cell division inhibitor sulA
Shal_0260
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
Shal_0259
sulA
Cell division inhibitor sulA
Position: -35
Score: 5.7
Sequence: TACTGTACAAATATACAGTT
Locus tag: Shal_2170
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Shal_2169
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
Shal_2170
umuD
DNA polymerase V, subunit UmuD
Shal_2169
umuC
DNA polymerase V, subunit UmuC
Position: -34
Score: 5.9
Sequence: TACTGTATAAAAATACAGTG
Locus tag: Shal_2184
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Shal_2183
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
Shal_2184
umuD
DNA polymerase V, subunit UmuD
Shal_2183
umuC
DNA polymerase V, subunit UmuC
Position: -124
Score: 5.6
Sequence: TACTGTATGATTGTACAGTA
Locus tag: Shal_1232
Name: recA
Funciton: Recombinase A
Shal_1232
recA
Recombinase A
Position: -36
Score: 5.9
Sequence: TACTGTTAATTTATACAGTA
Locus tag: Shal_2636
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
Shal_2636
topB
DNA topoisomerase III (EC 5.99.1.2)
Position: -21
Score: 4.8
Sequence: ATATGTATAAATTTACAGTG
Locus tag: Shal_0385
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Shal_0385
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Position: -62
Score: 5.8
Sequence: TACTGTATAGATAAACAGTA
Position: -40
Score: 5.5
Sequence: TACTGTTTAACTATACAGTG
Locus tag: Shal_1212
Name: recN
Funciton: DNA repair protein RecN
Shal_1212
recN
DNA repair protein RecN
Position: -43
Score: 5.4
Sequence: CACTGTTATTATGTACAGCA
Locus tag: Shal_2730
Name: dinG
Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Shal_2731
Name: SO1818
Funciton: protein of unknown function DUF81
Locus tag: Shal_2732
Name: SO1817
Funciton: Primosomal replication protein N prime-like protein
Shal_2730
dinG
ATP-dependent helicase DinG/Rad3
Shal_2731
SO1818
protein of unknown function DUF81
Shal_2732
SO1817
Primosomal replication protein N prime-like protein
Position: -31
Score: 6
Sequence: TACTGTATATAAAAACAGTG
Locus tag: Shal_2367
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Shal_2366
Name: yebR
Funciton: COG1956, GAF domain-containing protein
Shal_2367
yebG
SOS regulon DNA damage-inducible protein
Shal_2366
yebR
COG1956, GAF domain-containing protein
Position: -44
Score: 6.1
Sequence: TACTGTTTTTATATACAGTA
Locus tag: Shal_3176
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
Shal_3176
dinB
DNA polymerase IV (EC 2.7.7.7)
Position: -63
Score: 5.3
Sequence: TACTGTTCAAAAACACAGTA
Locus tag: Shal_1316
Name: ogr
Funciton: phage transcriptional activator, Ogr/delta
Shal_1316
ogr
phage transcriptional activator, Ogr/delta
Position: -35
Score: 5.7
Sequence: TACTGTATAGATAAACAGTG
Locus tag: Shal_1634
Name: xerC
Funciton: Integron integrase IntI2
Shal_1634
xerC
Integron integrase IntI2
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